iceberg-tools

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0.0.5 iceberg_tools-0.0.5-py3-none-any.whl

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Project: iceberg-tools
Version: 0.0.5
Filename: iceberg_tools-0.0.5-py3-none-any.whl
Download: [link]
Size: 114983
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Uploaded: 2023-12-13 18:21:59 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: iceberg-tools
Version: 0.0.5
Summary: FHIR schemas tools for bioinformatics.
Author: https://ellrottlab.org/
Home-Page: https://github.com/bmeg/iceberg-schema-tools
Project-Url: Bug Reports, https://github.com/bmeg/iceberg-schema-tools/issues
Project-Url: Source, https://github.com/bmeg/iceberg-schema-tools
Keywords: FHIR PFB gen3 bioinformatics graph
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Topic :: Software Development :: Build Tools
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.9
Requires-Python: >=3.9, <4
Requires-Dist: click (==8.1.7)
Requires-Dist: orjson (==3.9.5)
Requires-Dist: inflection (==0.5.1)
Requires-Dist: fhir.resources (==7.0.2)
Requires-Dist: PyYAML (==6.0.1)
Requires-Dist: flatten-json (==0.1.13)
Requires-Dist: dataclass-csv (==1.4.0)
Requires-Dist: gen3 (==4.22.2)
Requires-Dist: requests (==2.31.0)
Requires-Dist: requests-cache (==1.1.0)
Requires-Dist: joblib (==1.3.2)
Requires-Dist: beautifulsoup4 (==4.12.2)
Requires-Dist: fastjsonschema (==2.19.0)
Requires-Dist: jsonpointer (==2.4)
Requires-Dist: pyjq (==2.6.0)
Requires-Dist: jsonschema (==4.20.0)
Requires-Dist: referencing (==0.31.0)
Description-Content-Type: text/markdown
[Description omitted; length: 2227 characters]

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top_level.txt

iceberg_tools
tests

entry_points.txt

iceberg = iceberg_tools.cli:cli
pfb_fhir = iceberg_tools.cli:cli