Path |
Digest |
Size |
jcvi/__init__.py |
sha256=MLhuUpROuC4KN0ZJBYu77guKggYIa1X8xQh-M-9w7ag
|
816 |
jcvi/version.py |
sha256=gkJcoMMT_A5jULQ7dG6Sp6iwB_TAoBz2dbe_KgXdsGw
|
178 |
jcvi/algorithms/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
jcvi/algorithms/__main__.py |
sha256=n6xrFr6WuAtXdvmpdXVYAA0CHtnmZoKVi2W5jtntHSY
|
263 |
jcvi/algorithms/ec.py |
sha256=FHrRJFBdK0gKgRQqxb8p-bK0jP8gazkxIpmf_Q-yq54
|
6421 |
jcvi/algorithms/formula.py |
sha256=i1VOFlAScjV5prm5ydI_2oFopNEIQ1zyoLynNzZh3YA
|
6412 |
jcvi/algorithms/graph.py |
sha256=Gbqcc0W5-bZh1DPB-jLve-EgoCYE181l1fFq5NlIeoQ
|
14137 |
jcvi/algorithms/lis.py |
sha256=4rh0LenijOt3MNn4uEOElk-NjNM_ymAH6bGmxqz9Z10
|
6275 |
jcvi/algorithms/lpsolve.py |
sha256=k3KbxrNvs7VRz9TLw2IbOZQnjrZaYcM8GKAqGydXHko
|
24107 |
jcvi/algorithms/matrix.py |
sha256=KRniMkpDEtRpqSKVmNNiagvWuIF761IzZaZYJb54QJY
|
6102 |
jcvi/algorithms/maxsum.py |
sha256=8Uvw2Qwq4Js55-CGvyeKZ1MWNJqme_3syqLSx09Riqo
|
1296 |
jcvi/algorithms/ml.py |
sha256=19M1hd8nlCQKMNS13cRX9yqo6ojMTEy7nunThJf6eyw
|
1203 |
jcvi/algorithms/supermap.py |
sha256=sj9wvxTNcCY1oUT3SHSZOPs4Oh_8WlrmJqJupvnwLhQ
|
4978 |
jcvi/algorithms/tsp.py |
sha256=u-rYX2Og9oM0yunHnjVNg9a8mjpJS3hmqzoVSd8Qn1A
|
12550 |
jcvi/annotation/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
jcvi/annotation/__main__.py |
sha256=KY3waLX4lcUXuGoaeEbV5oDYgQjj9zoBuWbOFDUuA8c
|
258 |
jcvi/annotation/ahrd.py |
sha256=E2nQHWwfJdR5OzDULPmiDMJDragJt6udh1DMCSwDYjg
|
21401 |
jcvi/annotation/automaton.py |
sha256=DPWPmQJTTjKvXVKASCq-UF5Bmk_QoUx0elNYmsGOIKA
|
7917 |
jcvi/annotation/depth.py |
sha256=oqjiAHwADA071AfI9uhxZ_F9NNhxVh0_OG7t0Mt9xS8
|
6395 |
jcvi/annotation/evm.py |
sha256=ZoAbSgMrOBvmTEogC6TvBvVJlxBotPSNrIlpeztrxbY
|
7033 |
jcvi/annotation/maker.py |
sha256=DaVB-Pubhlsi8YFXgUDT_AF1FXwexvYZiFqTHOpnweE
|
14679 |
jcvi/annotation/pasa.py |
sha256=OEWAF51nTZhg8DffjmOHftLJxtenwqUkGhwX0g6w1mQ
|
19482 |
jcvi/annotation/qc.py |
sha256=PkvISKSAEE-YbYyvya8_rUCIwkPg6nuseohzeBkIrhk
|
12807 |
jcvi/annotation/reformat.py |
sha256=GUtj4Io1k2mDNYADSe6xEkrDeruNFYuan1TAxe_DAv4
|
42705 |
jcvi/annotation/stats.py |
sha256=-TFgkkPgqdBGMBwHiqQaaViIpt0qkXTRPn-1dc_iY-4
|
12632 |
jcvi/annotation/train.py |
sha256=y5npy8vRnvi6avS0GPg98lpxwAxb6LbMB2eB8X30OIw
|
6781 |
jcvi/annotation/trinity.py |
sha256=KvGYOlRxr2f6eIOzRuAE_-Y2HadOU9rhE84XrFt89f4
|
5040 |
jcvi/apps/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
jcvi/apps/__main__.py |
sha256=EO9QbBSlZLTJ2p6UoAafDsMPCn2QPjrjcOZhziQmhN8
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249 |
jcvi/apps/align.py |
sha256=R8mo5nbU_IEzqSCbSly2fXcYZ_4RAip9zs8m1iVo1Vk
|
20394 |
jcvi/apps/base.py |
sha256=4acxE8Xy_CZcGiBGfvfj7OT4SmwtF6cBW-I7-qoVYSw
|
66715 |
jcvi/apps/biomart.py |
sha256=PcICGZWoEH3EqOo93kKJxounPjYdMTJj8hnz2r4c2dA
|
12248 |
jcvi/apps/blastplus.py |
sha256=IYpd5TFdNshHZrOPBR_w0jS6tmLAhwvfPVARo_saGgs
|
3516 |
jcvi/apps/bowtie.py |
sha256=NUOtZu3YHEb2S9e9MQ59MnhEqzSoEqrTw96Hv1lhWgM
|
5228 |
jcvi/apps/bwa.py |
sha256=uaXof1bod8Nl57mw9AfyLL7ZChteIBAOyEVnePyNM7U
|
7676 |
jcvi/apps/cdhit.py |
sha256=AW-3LHtQosxvD8xyzhqL4n2BadXyWoqduwyOUyCl3ZU
|
7237 |
jcvi/apps/emboss.py |
sha256=hi3Idg4UTLqZO6EZvV7pZwcixeMojFBqYHOsIeGb6M0
|
2611 |
jcvi/apps/fetch.py |
sha256=RGfbKANliJV_xLs8HAdkWbwbA5CMn1x82Ne5SMPMpcE
|
21317 |
jcvi/apps/gbsubmit.py |
sha256=frJD91zpG1ahnPXe0hu0YkByVyB6okywDUfRzie-5xs
|
19442 |
jcvi/apps/gmap.py |
sha256=8YRQ5_1wTNZap4uDBhc7f5bqxTc1lUNv1N8xnOyJMLQ
|
6881 |
jcvi/apps/grid.py |
sha256=wgv8yfKYRx2g5KhobeKd1jpif0wYLCs0PDv26Mhjp8U
|
18461 |
jcvi/apps/ks.py |
sha256=wISdQQMpaydKsVoFS9nrVuBCUAc4Yq7CcR8QlkSGx-8
|
33945 |
jcvi/apps/lastz.py |
sha256=RAHP-am6PhrAmuzuley0HhBQ9FWRa844c3Lp0siEpU0
|
7214 |
jcvi/apps/mask.py |
sha256=MYJpFM1kNQh2DP1VdAwTok9_4MyiqJPUjpC-x2trnUg
|
2992 |
jcvi/apps/pedigree.py |
sha256=H3cn5DGlT3qDsdvMwsJKMpuVt6RYrW_3wrV-y1aY-SA
|
7525 |
jcvi/apps/phylo.py |
sha256=AgPAod7b1wOToMj4NO1-09jutIROdfePd_4rtnUhNME
|
35460 |
jcvi/apps/r.py |
sha256=h4fWHu88L74AVEvakNbdKHMv3um-Y4w5fmsucm6jEWA
|
1854 |
jcvi/apps/restriction.py |
sha256=gNmTle2Ia_Uw3rDKhZR3x-1B2Rbov7Be7_11-JFP34M
|
4873 |
jcvi/apps/script.py |
sha256=EvLYPdgWauiWe6iHbt6y6TFb9Nm8JjLv972dMoRDCvY
|
2116 |
jcvi/apps/softlink.py |
sha256=CfHXTxSnMNPf2Py9zhNiOyL7QyTLIP2oqy29Gf-ABvs
|
3767 |
jcvi/apps/uclust.py |
sha256=IwnuIIA9Qv_Sgu9I2WE5jjQRsGZOV1UdeVUBY3Qe_HU
|
33029 |
jcvi/apps/uniprot.py |
sha256=HW5dAF8SANMcvQsodDsQ_Mbu4Sst_AivTREaeBN6dx4
|
5194 |
jcvi/apps/vecscreen.py |
sha256=oUQEoqctTNFDIO5R0AlCAkI1Ljy9SGkpP4e3aRgWdkk
|
3636 |
jcvi/assembly/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
jcvi/assembly/__main__.py |
sha256=eYPjmwRDhDQyw86mpJ7MattxL9QnYybprGjVVgBvnSU
|
253 |
jcvi/assembly/allmaps.py |
sha256=kk-DPSVRjvUtO_44mQdJGBkw3nfMz_5_jssmOyWvufM
|
65586 |
jcvi/assembly/allpaths.py |
sha256=B0-0VckU1NMcnnh4IeVj05sa7qnLhuRVOkNbDk5jMFU
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15425 |
jcvi/assembly/automaton.py |
sha256=tBfuZb1EXukRgw5UkjTJXaTohph8tZmF7AUYhWIPX0o
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13251 |
jcvi/assembly/base.py |
sha256=yju_L3wBgJGRcKa5sFTJz3Srbs0KDhx93UNycRce5vA
|
5535 |
jcvi/assembly/ca.py |
sha256=rlwrEl_TbwaEKuYDnO8S4iwNeYNIi2IFNdhCSieQ1Ek
|
34986 |
jcvi/assembly/chic.cpython-310-darwin.so |
sha256=AFTJV6n59t52wKZzPDRIn1H2J2np2QPPxgD6Ko2FnDM
|
94664 |
jcvi/assembly/chic.pyx |
sha256=_TYLTmbE4bNp-4W6IOhGQsPTO2ZZuhETj2Njlo_KSnw
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3457 |
jcvi/assembly/coverage.py |
sha256=Dwb33lKHay697sCbcYQF8MxmlaKg34kJS-r8YTuQYhs
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4558 |
jcvi/assembly/gaps.py |
sha256=aulaDTnzIkxzd5n6U8gzaTQ7Pf32wFtWii9BGQosKnY
|
8650 |
jcvi/assembly/geneticmap.py |
sha256=MQKemQKlxaU-fNwa23o8VGCtltntDojdXODh7037Dok
|
20008 |
jcvi/assembly/goldenpath.py |
sha256=pNUkWbpb8UpXr49iH7XcVRVSZFkBcrIe5goLtWp3j4c
|
34665 |
jcvi/assembly/hic.py |
sha256=fDqVrfytqcet2xfjAaqQm_R5CrFy9F_93oiqPPun0so
|
56179 |
jcvi/assembly/kmer.py |
sha256=6CLrMFv9pBy_18UkXYAYMQswjO0ODpk6D6mzNA9Momw
|
43053 |
jcvi/assembly/opticalmap.py |
sha256=a2dAcGVDQAek1iNwb5arRKhwzSGBj6ssEcJ-bm4tNBY
|
12475 |
jcvi/assembly/patch.py |
sha256=Ds59rrv_JrMPp7n1_WGb-DbspTXHPGX-d4em2jlNkF0
|
27263 |
jcvi/assembly/postprocess.py |
sha256=tauaAoTYnvvz23CwZCc_SaWQcBDNJxlIRG0qDKXiDlc
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15706 |
jcvi/assembly/preprocess.py |
sha256=r-cNO4Woo_xDmpZDBdRS_5mZwpb5Ua_FhuF6NvU8j_Y
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21503 |
jcvi/assembly/sim.py |
sha256=9Pvc3ckCXDTzgjntm7qeDdFppXtJ1bCDTCgxWKmJkt4
|
6275 |
jcvi/assembly/soap.py |
sha256=enmkKRxNO7-h8Gwgl6mbNy2LJj89bimScUCrXhPw4Es
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8836 |
jcvi/assembly/syntenypath.py |
sha256=ejqxgBVhu5jgOK5uWx5z1kORQgv64dmbprlhSFApb-M
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16163 |
jcvi/assembly/trinity.py |
sha256=TQHFGNALmZOYKq7Y56QCvxiy6OYbzE5LrXNsGNuzXxo
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5042 |
jcvi/compara/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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jcvi/compara/__main__.py |
sha256=Yol0Kp6KNjdZaOkNkO2SazhjKtxXjqaqY2oQNd4s7O4
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jcvi/compara/base.py |
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4218 |
jcvi/compara/blastfilter.py |
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9765 |
jcvi/compara/catalog.py |
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28322 |
jcvi/compara/fractionation.py |
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26317 |
jcvi/compara/ks.py |
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33973 |
jcvi/compara/pad.py |
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jcvi/compara/pedigree.py |
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jcvi/compara/phylogeny.py |
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3048 |
jcvi/compara/quota.py |
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7933 |
jcvi/compara/reconstruct.py |
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10310 |
jcvi/compara/synfind.py |
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jcvi/compara/synteny.py |
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57581 |
jcvi/formats/__init__.py |
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jcvi/formats/__main__.py |
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jcvi/formats/agp.py |
sha256=Zk7jsk9wRa0y9nAKhbyKHhs32_-pHSCEAqqPM7eT30g
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63425 |
jcvi/formats/base.py |
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33973 |
jcvi/formats/bed.py |
sha256=eND5kO7RZZPw7Z0ARLjTR9Zz87JNIgcYaSOBIdEF52E
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71610 |
jcvi/formats/blast.py |
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43167 |
jcvi/formats/cblast.cpython-310-darwin.so |
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jcvi/formats/cblast.pyx |
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jcvi/formats/cdt.py |
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jcvi/formats/chain.py |
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jcvi/formats/contig.py |
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jcvi/formats/coords.py |
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15170 |
jcvi/formats/excel.py |
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jcvi/formats/fasta.py |
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jcvi/formats/fastq.py |
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29570 |
jcvi/formats/genbank.py |
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15510 |
jcvi/formats/gff.py |
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119884 |
jcvi/formats/html.py |
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3962 |
jcvi/formats/maf.py |
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jcvi/formats/obo.py |
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jcvi/formats/paf.py |
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jcvi/formats/pdf.py |
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jcvi/formats/psl.py |
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jcvi/formats/pyblast.py |
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jcvi/formats/sam.py |
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28218 |
jcvi/formats/sizes.py |
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jcvi/formats/vcf.py |
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jcvi/graphics/__init__.py |
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jcvi/graphics/__main__.py |
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jcvi/graphics/align.py |
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jcvi/graphics/assembly.py |
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jcvi/graphics/base.py |
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jcvi/graphics/blastplot.py |
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jcvi/graphics/chromosome.py |
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jcvi/graphics/coverage.py |
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jcvi/graphics/dotplot.py |
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15127 |
jcvi/graphics/glyph.py |
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21811 |
jcvi/graphics/grabseeds.py |
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24798 |
jcvi/graphics/graph.py |
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jcvi/graphics/heatmap.py |
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jcvi/graphics/histogram.py |
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jcvi/graphics/karyotype.py |
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jcvi/graphics/landscape.py |
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34110 |
jcvi/graphics/logo.py |
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1276 |
jcvi/graphics/mummerplot.py |
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jcvi/graphics/synteny.py |
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22564 |
jcvi/graphics/table.py |
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jcvi/graphics/tree.py |
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20370 |
jcvi/graphics/wheel.py |
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jcvi/graphics/whisker.py |
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jcvi/projects/__init__.py |
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jcvi/projects/__main__.py |
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