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jlsteenwyk-biokit

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1.1.1 jlsteenwyk_biokit-1.1.1-py2.py3-none-any.whl

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Project: jlsteenwyk-biokit
Version: 1.1.1
Filename: jlsteenwyk_biokit-1.1.1-py2.py3-none-any.whl
Download: [link]
Size: 70898
MD5: 3adcde6a04cb6edb52847040094f5543
SHA256: d72aed32312122d0358b8cf5bb3b29d7b71988c13e859884fabb9c5255b431da
Uploaded: 2024-01-03 01:05:56 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: jlsteenwyk-biokit
Version: 1.1.1
Author: Jacob L. Steenwyk
Author-Email: jlsteenwyk[at]gmail.com
Home-Page: https://github.com/jlsteenwyk/biokit
Classifier: Operating System :: OS Independent
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Topic :: Scientific/Engineering
Requires-Dist: biopython (>=1.81)
Requires-Dist: numpy (>=1.24.0)
Requires-Dist: cython
Description-Content-Type: text/markdown
License-File: LICENSE.md
[Description omitted; length: 4378 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.41.2)
Root-Is-Purelib: true
Tag: py2-none-any
Tag: py3-none-any

RECORD

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jlsteenwyk_biokit-1.1.1.dist-info/RECORD — —

top_level.txt

biokit

entry_points.txt

[console_scripts]
biokit = biokit.biokit:main
bk_alignment_length = biokit.biokit:alignment_length
bk_alignment_recoding = biokit.biokit:alignment_recoding
bk_alignment_summary = biokit.biokit:alignment_summary
bk_aln_len = biokit.biokit:alignment_length
bk_aln_recoding = biokit.biokit:alignment_recoding
bk_aln_summary = biokit.biokit:alignment_summary
bk_assembly_metrics = biokit.biokit:genome_assembly_metrics
bk_char_freq = biokit.biokit:character_frequency
bk_character_frequency = biokit.biokit:character_frequency
bk_con_seq = biokit.biokit:consensus_sequence
bk_con_sites = biokit.biokit:constant_sites
bk_consensus_sequence = biokit.biokit:consensus_sequence
bk_constant_sites = biokit.biokit:constant_sites
bk_faidx = biokit.biokit:faidx
bk_fastq_read_lengths = biokit.biokit:fastq_read_lengths
bk_fastq_read_lens = biokit.biokit:fastq_read_lengths
bk_ffc = biokit.biokit:file_format_converter
bk_file_format_converter = biokit.biokit:file_format_converter
bk_format_converter = biokit.biokit:file_format_converter
bk_gc = biokit.biokit:gc_content
bk_gc1 = biokit.biokit:gc_content_first_position
bk_gc2 = biokit.biokit:gc_content_second_position
bk_gc3 = biokit.biokit:gc_content_third_position
bk_gc_content = biokit.biokit:gc_content
bk_gc_content_first_position = biokit.biokit:gc_content_first_position
bk_gc_content_second_position = biokit.biokit:gc_content_second_position
bk_gc_content_third_position = biokit.biokit:gc_content_third_position
bk_ge = biokit.biokit:faidx
bk_gene_wise_relative_synonymous_codon_usage = biokit.biokit:gene_wise_relative_synonymous_codon_usage
bk_gene_wise_rscu = biokit.biokit:gene_wise_relative_synonymous_codon_usage
bk_genome_assembly_metrics = biokit.biokit:genome_assembly_metrics
bk_get_entry = biokit.biokit:faidx
bk_grscu = biokit.biokit:gene_wise_relative_synonymous_codon_usage
bk_gw_rscu = biokit.biokit:gene_wise_relative_synonymous_codon_usage
bk_l50 = biokit.biokit:l50
bk_l90 = biokit.biokit:l90
bk_longest_cont = biokit.biokit:longest_scaffold
bk_longest_contig = biokit.biokit:longest_scaffold
bk_longest_scaff = biokit.biokit:longest_scaffold
bk_longest_scaffold = biokit.biokit:longest_scaffold
bk_ml2sl = biokit.biokit:multiple_line_to_single_line_fasta
bk_multiple_line_to_single_line_fasta = biokit.biokit:multiple_line_to_single_line_fasta
bk_n50 = biokit.biokit:n50
bk_n90 = biokit.biokit:n90
bk_num_of_cont = biokit.biokit:number_of_scaffolds
bk_num_of_lrg_cont = biokit.biokit:number_of_large_scaffolds
bk_num_of_lrg_scaffolds = biokit.biokit:number_of_large_scaffolds
bk_num_of_scaffolds = biokit.biokit:number_of_scaffolds
bk_number_of_contigs = biokit.biokit:number_of_scaffolds
bk_number_of_large_contigs = biokit.biokit:number_of_large_scaffolds
bk_number_of_large_scaffolds = biokit.biokit:number_of_large_scaffolds
bk_number_of_scaffolds = biokit.biokit:number_of_scaffolds
bk_parsimony_informative_sites = biokit.biokit:parsimony_informative_sites
bk_pi_sites = biokit.biokit:parsimony_informative_sites
bk_pis = biokit.biokit:parsimony_informative_sites
bk_position_specific_score_matrix = biokit.biokit:position_specific_score_matrix
bk_pssm = biokit.biokit:position_specific_score_matrix
bk_recode = biokit.biokit:alignment_recoding
bk_relative_synonymous_codon_usage = biokit.biokit:relative_synonymous_codon_usage
bk_remove_fasta_entry = biokit.biokit:remove_fasta_entry
bk_remove_short_seqs = biokit.biokit:remove_short_sequences
bk_remove_short_sequences = biokit.biokit:remove_short_sequences
bk_rename_fasta = biokit.biokit:rename_fasta_entries
bk_rename_fasta_entries = biokit.biokit:rename_fasta_entries
bk_reorder_by_seq_len = biokit.biokit:reorder_by_sequence_length
bk_reorder_by_sequence_length = biokit.biokit:reorder_by_sequence_length
bk_rscu = biokit.biokit:relative_synonymous_codon_usage
bk_seq_comp = biokit.biokit:sequence_complement
bk_seq_len = biokit.biokit:sequence_length
bk_sequence_complement = biokit.biokit:sequence_complement
bk_sequence_length = biokit.biokit:sequence_length
bk_single_line_to_multiple_line_fasta = biokit.biokit:single_line_to_multiple_line_fasta
bk_sl2ml = biokit.biokit:single_line_to_multiple_line_fasta
bk_subset_pe_fastq = biokit.biokit:subset_pe_fastq_reads
bk_subset_pe_fastq_reads = biokit.biokit:subset_pe_fastq_reads
bk_subset_se_fastq = biokit.biokit:subset_se_fastq_reads
bk_subset_se_fastq_reads = biokit.biokit:subset_se_fastq_reads
bk_sum_of_contig_lengths = biokit.biokit:sum_of_scaffold_lengths
bk_sum_of_scaffold_lengths = biokit.biokit:sum_of_scaffold_lengths
bk_trans_seq = biokit.biokit:translate_sequence
bk_translate_seq = biokit.biokit:translate_sequence
bk_translate_sequence = biokit.biokit:translate_sequence
bk_trim_pe_adapters_fastq = biokit.biokit:trim_pe_adapters_fastq
bk_trim_pe_adapters_fastq_reads = biokit.biokit:trim_pe_adapters_fastq
bk_trim_pe_fastq = biokit.biokit:trim_pe_fastq
bk_trim_pe_fastq_reads = biokit.biokit:trim_pe_fastq
bk_trim_se_adapters_fastq = biokit.biokit:trim_se_adapters_fastq
bk_trim_se_adapters_fastq_reads = biokit.biokit:trim_se_adapters_fastq
bk_trim_se_fastq = biokit.biokit:trim_se_fastq
bk_trim_se_fastq_reads = biokit.biokit:trim_se_fastq
bk_var_sites = biokit.biokit:variable_sites
bk_variable_sites = biokit.biokit:variable_sites
bk_vs = biokit.biokit:variable_sites