Reverse Dependencies of logomaker
The following projects have a declared dependency on logomaker:
- bpnet-lite — bpnet-lite is a minimal implementation of BPNet, a neural network aimed at interpreting regulatory activity of the genome.
- crispr-bean — Base Editor screen analysis [Bayesian Estimation of variant effect] with guide Activity Normalization
- DeepLocRNA — Predicting RNA localization based on RBP binding information
- ExpoSeq — A pacakge which provides various ways to analyze NGS data from phage display campaigns
- fast-tcrdist — Optimized TCRDist calculation for TCR repertoire data analysis
- immuneML — immuneML is a software platform for machine learning analysis of immune receptor repertoires.
- IPTKL — IPTK is a library specialized in the analysis of HLA-peptidomes identified through an immunopeptidomics pipeline.
- kmer-map — A package for visualizing kmers.
- learna-tools — RNA Design with automated reinforcement learning.
- learnMSA — learnMSA: Learning and Aligning large Protein Families
- modisco-lite — Transcription Factor MOtif Discovery from Importance SCOres - lite
- mubind — ML for biomolecular binding
- mutagenesis-visualization — A package for processing, analysis and visualization of site-saturation mutagenesis data
- prolint2 — ProLint2: Lipid-Protein Interaction Analysis.
- pylipid — PyLipID - A Python Library For Lipid Interaction Analysis
- pyrepseq — Python library for immune repertoire analyses
- rrmscorer — RRM-RNA score predictor
- RSeQC — RNA-seq QC Package
- seqexplainer — Interpreting sequence-to-function machine learning models
- splicekit — splicekit: comprehensive toolkit for splicing analysis from short-read RNA-seq
- STFD — STFD: Series of deep learning-based foundation models for spatial transcriptomic data analysis
- tangermeme — Biological sequence analysis for the modern age.
- TopDownCrawl — TopDownCrawl is a tool for aligning quantitative binding data for k-mers from experiments such as SELEX-seq and SMiLE-seq
- uorf4u — A tool for short uORF annotation.
- utilsovs-pkg — Utils derived from the O-GlcNAc Database source code
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