meningotype

View on PyPIReverse Dependencies (0)

0.8.5 meningotype-0.8.5-py3-none-any.whl

Wheel Details

Project: meningotype
Version: 0.8.5
Filename: meningotype-0.8.5-py3-none-any.whl
Download: [link]
Size: 4440219
MD5: 2ded38054d235d243cf8b06f75f6d3ac
SHA256: 3dc67bba14439530945935b6a870c44230669e3e63c9a6de0dd874a56245e956
Uploaded: 2021-08-02 03:09:05 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: meningotype
Version: 0.8.5
Summary: In silico serotyping and finetyping (porA and fetA) of Neisseria meningitidis
Author: Jason Kwong
Author-Email: kwongj[at]gmail.com
Home-Page: https://github.com/MDU-PHL/meningotype
License: GPLv3
Keywords: microbial genomics Neisseria sequence typing
Classifier: Development Status :: 4 - Beta
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Classifier: Intended Audience :: Science/Research
Requires-Dist: biopython
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 8425 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.36.2)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
meningotype/__init__.py sha256=ryTvYnQfAb0LetADNMrzLGomNovaozHgioSBOHXn2ms 21
meningotype/check_deps.py sha256=0jZ1RBBiE3s7X9skrmKoT70lD_ukMkDlhG6EasvwwXE 1012
meningotype/ctrA.py sha256=GbO82UkueyAbtlPiedZ8XNM6XJbt2eqzixOFKRakFJQ 2783
meningotype/finetype.py sha256=QhrXAVhYYT_tw8VKugU5peprSr5bacHTftch_bK74eE 3795
meningotype/meningotype.py sha256=q2dtUFJ1S0TLik5EeXamR4zQLGBSGFPhiEv_1lWkoKY 22525
meningotype/menwy.py sha256=cd8bAWUIO8lUMnT0Npp7_GhlT6zLtio3KD1f8V9tQWQ 2583
meningotype/nmen.py sha256=tzWWdF7dc-9VAXi_CaZkMVyZlzWO-gvLi1Upm1TQJMo 372
meningotype/porB.py sha256=r1kyiQ26iKwyAiIHz6TetMd4IaKILzmMxx8vqDz4b6Y 3596
meningotype/verification.py sha256=FLJ51cXk_synsPPYeurCXaFEOOXPToPDiF_o-9toenk 3497
meningotype/db/BASTalleles.txt sha256=wRnmYci9b47EcjHE4w4mJ5bPB8C1eSAPUDLApSacl1k 47586
meningotype/db/BASTalleles.txt.old sha256=pK2syl8Tb7jEPKi4HyVuJKmaool9yxgPhWqGRHYJo4A 46328
meningotype/db/FetA_VR.fas sha256=d285prszgnroZWmU3TcuG0gSU9JhxMpLnaNbQqD5qJI 32236
meningotype/db/FetA_VR.fas.old sha256=Eo1I6cENC0LcXpD7gJFGmhVpa304P-5sVauskUnW6MM 31985
meningotype/db/NHBA_peptide.fas sha256=7_O9tz3cIq-ineb0fbaxcZ_pU3PtvA7EOepwIUvq_UE 400934
meningotype/db/NHBA_peptide.fas.old sha256=6uJJC8imkSfzhwKXBjAVf9pjoKthRmHQaFZQEjuk3jk 379722
meningotype/db/NadA_peptide.fas sha256=WWhRTK7KZ95Swa0vniCf3Ue1w1A1gs0eM87M0gVFOmo 32524
meningotype/db/NadA_peptide.fas.old sha256=MOETWFQzztMyCtfqw9KX-69d7YMHDu-_iZrdOD1LDLs 31697
meningotype/db/PorA.fa sha256=EcMzBCmQLDuylj0zdq3hZIut1e9FCV1yYL7C0qAjd_w 1198
meningotype/db/PorA_VR1.fas sha256=Y4j2krau7I05MkQ3EM2Uy7rQpPK4awJCBnTJOchnicY 9710
meningotype/db/PorA_VR1.fas.old sha256=Y4j2krau7I05MkQ3EM2Uy7rQpPK4awJCBnTJOchnicY 9710
meningotype/db/PorA_VR2.fas sha256=_G20qyljGzYLe26KWVN0OCZvsUA_wJD7DblPS170wL0 25805
meningotype/db/PorA_VR2.fas.old sha256=nmOgKGYLk6dFnNoCnntfTpif5Y19PhFSmPmyJBQjm4g 25604
meningotype/db/PorB.fas sha256=wCT_RKYB_VR3imILSpoWa2z3lwrUNaTNHIjatm89w4Q 1514988
meningotype/db/PorB.fas.old sha256=wCT_RKYB_VR3imILSpoWa2z3lwrUNaTNHIjatm89w4Q 1514988
meningotype/db/bexseroPRIMERS sha256=mDR0P_XW9bdHMK8rJUFiKP47WfqdO8H7t4GaCdkRLEo 158
meningotype/db/ctrA.fa sha256=oF-3-Q0r1_mO3UH8Myb_xyQd6jC9vpZG1-wU9eDvonw 1202
meningotype/db/ctrAPRIMERS sha256=jQsviMKvuoNlIO4FVv3XktkMQLPHTsSHNUtIqSQKH4c 46
meningotype/db/fHbp_peptide.fas sha256=N5yCzrSUmlzuhGyXxxqrbhOoMo64HdEvh_2iSfTYTqU 289910
meningotype/db/fHbp_peptide.fas.old sha256=yXnXElvXxc_l0bp6H6Dka0TD1rHC5wlg9MuSEGC3vgo 283027
meningotype/db/finetypePRIMERS sha256=2mVfDyTKrsq8mSVOaGUzssMtu0c6zW4oVXbTbux5RCI 103
meningotype/db/seroALLELES.fa sha256=nV7S760VGpS_V0XH1TkNvKX4h4o0h-3aicpE1e_tTuc 699
meningotype/db/seroPRIMERS sha256=bwALYQHvlXPvJUO0iYWsx1GDJY_6VyGAWu87re0eO98 316
meningotype/db/blast/NHBA_peptide.phr sha256=bVWcD32zOkqcKaTR3a3Mx63t2WdXIroBmyOlhmzMUQI 66106
meningotype/db/blast/NHBA_peptide.pin sha256=v4mRVKWwm3mq1cVNe81GYcmjb-MC_GzyY9dTlyf6tYE 6712
meningotype/db/blast/NHBA_peptide.psq sha256=aPdIrM9mbkrapqRv8b_6wtAWRVVsNJMWi2E4WduELMc 386037
meningotype/db/blast/NadA_peptide.phr sha256=X6DAqMGBDOb9PoT69BNeojn_q5aa8ttJzjVxI-WG1RI 6763
meningotype/db/blast/NadA_peptide.pin sha256=I2Rzd4MoOPUdK5CSHo0v0AvilrIR7aOo-BYJ-y8QTRk 776
meningotype/db/blast/NadA_peptide.psq sha256=VAeHpbf3uwdxy1ikwutj_IZ1WMjaa7r5x99FxVklM6E 31008
meningotype/db/blast/ctrA.nhr sha256=w7prE--8WABSrFlkO3ThElOnOEs3TjEAgCKEmfMo-3Y 67
meningotype/db/blast/ctrA.nin sha256=HX9C6o6n5ZHR8ZA-uMZAKCnGDEytyeBFU0l2glxjM40 88
meningotype/db/blast/ctrA.nsq sha256=QzDM08gZGnY2BaTrYipRIt-DFezqP5u2qJxKdbu7brU 296
meningotype/db/blast/fHbp_peptide.phr sha256=Lbj7rEAEogD-cfqbxY3JS3RiJU0RppCZYfv11pf--kI 83896
meningotype/db/blast/fHbp_peptide.pin sha256=dJIMWnbhSJ63spQppNlR0NNxo9pR6divBx79e_2HqfU 8496
meningotype/db/blast/fHbp_peptide.psq sha256=2XzULabDd38RqqaMM4qONnrHPHavbsPTMuYxWp3WvcU 271049
meningotype/db/blast/fet.phr sha256=-fc5oo9dHTfLD-4fdfdo90ZleI5NFtIkrxgrNZkXx8U 47448
meningotype/db/blast/fet.pin sha256=6wg5H4GEwy1YtQqQydsswddFITItp5d9Aii-z7y-bG4 5056
meningotype/db/blast/fet.psq sha256=LKgh5rLhrr1rU49BbY7Bho2L9i6iLFMFDK-AItwRg9E 22853
meningotype/db/blast/porA.nhr sha256=AEOQzRe0OFVF3EyJEb4FTstLsE2UO8Z7oamastnBNDA 81
meningotype/db/blast/porA.nin sha256=C-A5Agym2J-zRFb8jLXi528kNE7Mhn2NYI9K--zx108 88
meningotype/db/blast/porA.nsq sha256=ZKWCiuPSSKt4VP7ManXhWRoGtAqOXm5leypKRm1SINQ 291
meningotype/db/blast/porA1.phr sha256=jP45U6FlVAH6G_CMLYvGzWzb9KaMZeFugotOQFmI20w 22752
meningotype/db/blast/porA1.pin sha256=Z-p52dCAnVlZJV6xSMCfvX4AOLg7-9Oj_OGG12Zu9oc 2496
meningotype/db/blast/porA1.psq sha256=DQ6vGmC3q9y8rbM0p1hLRmuVYBMi4TefQWP6FT47gkg 5183
meningotype/db/blast/porA2.phr sha256=LtHFD-GwcCoguAcgp96evXTsfKIOhQ0XsP77B5WAyCk 64493
meningotype/db/blast/porA2.pin sha256=UpILmMlXeFxDq0pnb_sbPSDFH2qv1dhvK8zB6APIYH8 6792
meningotype/db/blast/porA2.psq sha256=NM0VQ9hfndp4GC9L9ACFDs___6XsVgd1-mD5CaRQGOA 12831
meningotype/db/blast/porB.nhr sha256=cRAkwbrPiNLhxb-fDshC3JmbH0UauPJQKgQmvAugmiQ 110338
meningotype/db/blast/porB.nin sha256=ktdsfGbbPJkCDI9kCeX8qSJc6DlEupW90DFm6Vs4Mgs 17520
meningotype/db/blast/porB.nsq sha256=FTS8WPxfmBJAE0LeuChsR6bePCLJRXRL9SCkQDeNLGQ 374078
meningotype/db/blast/seroALLELES.nhr sha256=TDYmbNx9DHIRT1HcXpi3fa22eglCUXhbM7A8CrLT7wM 384
meningotype/db/blast/seroALLELES.nin sha256=VKIJVNX44ASVHy93ZQErD_lwr-JPNf9BxLyn9woq9Us 172
meningotype/db/blast/seroALLELES.nsq sha256=hEuUjkwL1bURoDjGrRkhv7079jcm2blSR6BHn4bkca0 174
meningotype/db/blast/synG.nhr sha256=d4DSz417UkpSVdPYXv8zYl10Zkp4oLUxPjTsHMpgqfw 67
meningotype/db/blast/synG.nin sha256=vdQK1-bgstVOIaVRK0JoCCK8dpC7CVmTOdD_SaOV19g 88
meningotype/db/blast/synG.nsq sha256=NUgH3YJ042S4L0v9Ou-IJt0qsnXsncwGOx2-GWH7bcQ 780
meningotype/test/A.fna sha256=6Nq_azNGB8n6g0XT8Tf4pk4ajm0H9cdtigjHcX9GtUE 2220899
meningotype/test/B.fna sha256=jALosisD00Q7L5nbmBvXM6NH5evkWRPOhOZROIns6MY 2221345
meningotype/test/C.fna sha256=JLmnp4dyfpo9imOAW_Kc9H47y4wgLrPl8GVRQ4U33Dc 2315577
meningotype/test/W.fna sha256=Spc8FP5pUwAracK_ZJGNvG8L0-RaaJXOxlJRzSjWDgY 2219694
meningotype/test/X.fna sha256=FCmHN0J3XlCefXmOunqfdtMJzSwMgDcknmiTgyzvAPM 2229906
meningotype/test/Y.fna sha256=N-pCMWb1YSOX5eHG2hCEtgQ1joaYpMlDBY4gDyIOnv4 2161800
meningotype-0.8.5.dist-info/LICENSE sha256=WJ7YI-moTFb-uVrFjnzzhGJrnL9P2iqQe8NuED3hutI 35141
meningotype-0.8.5.dist-info/METADATA sha256=v6nPRXQycFJ0LIeT3Lr0OrzPcged00SFhm8-qmi9qGQ 9348
meningotype-0.8.5.dist-info/WHEEL sha256=OqRkF0eY5GHssMorFjlbTIq072vpHpF60fIQA6lS9xA 92
meningotype-0.8.5.dist-info/entry_points.txt sha256=Uj7CcLGi-mBAgof72Be3WJe8l5rAggQnXNN3WniL0TQ 62
meningotype-0.8.5.dist-info/top_level.txt sha256=zwFx0ETa3WeTf8SwmF3NJ_ea7SmLPJtNwx-nfDcu2CA 12
meningotype-0.8.5.dist-info/RECORD

top_level.txt

meningotype

entry_points.txt

meningotype = meningotype.meningotype:main