moPepGen

View on PyPIReverse Dependencies (0)

1.4.0 mopepgen-1.4.0-py3-none-any.whl

Wheel Details

Project: moPepGen
Version: 1.4.0
Filename: mopepgen-1.4.0-py3-none-any.whl
Download: [link]
Size: 271752
MD5: 16a2729bec6b029997ad81801448000d
SHA256: 492cdaecf7987e7acd95252af0b2a89a76cccfc7066c294bcee65eb9dac7ed8c
Uploaded: 2024-04-08 18:53:37 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: mopepgen
Version: 1.4.0
Summary: Multi-omic peptide generator
Author: Chenghao Zhu, Yiyang Liu
Author-Email: ChenghaoZhu[at]mednet.ucla.edu, yiyangliu[at]mednet.ucla.edu
Home-Page: https://github.com/uclahs-cds/package-moPepGen
Project-Url: Bug Tracker, https://github.com/uclahs-cds/package-moPepGen/issues
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU General Public License v2 (GPLv2)
Classifier: Operating System :: OS Independent
Requires-Python: >=3.7
Requires-Dist: biopython
Requires-Dist: psutil
Requires-Dist: pathos
Requires-Dist: six
Requires-Dist: matplotlib
Requires-Dist: regex
Description-Content-Type: text/markdown
License-File: LICENSE.txt
[Description omitted; length: 1853 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.43.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
moPepGen/SeqFeature.py sha256=YECJVC9WweOxYXyJ5dq4_kiU8hE_fPd6NQUBFaGP030 9075
moPepGen/__init__.py sha256=deJJL79vanwP30nM1cYLcCOT6ZzhMBt7-3FFyPHdCVg 3219
moPepGen/constant.py sha256=IqbuRfna6xf2RYaEsA4YhhuiQUSxigK5XR0xwSkqUtY 1678
moPepGen/err.py sha256=jlxL_mb3fnilU0EuoyXSkfvt55H0tAgBZmnLkrGicis 5018
moPepGen/fake.py sha256=b765zSRHk921W1aFPNgCLdp3SDW-TmmE3OeyO_-_IEI 35730
moPepGen/index.py sha256=43ICOHQ-CwY-swSvOm2EDtfuAvAP-5c7IOCAATv8M8c 9255
moPepGen/params.py sha256=_3objikNG5UIKfIWzSed4Jowp3JT6KA8i6wuyOSW_JM 3808
moPepGen/version.py sha256=p6DlpBvTycR-suH4sp_aoBPAWp5NVdWbaevqTgwlNMY 1873
moPepGen/aa/AminoAcidSeqDict.py sha256=mjBPvF2s1o94ae_suAlWQ6tXE2SBOt41C-NXuIOcXGk 5259
moPepGen/aa/AminoAcidSeqRecord.py sha256=YKDmUbOJ6Sm_LL7WqMZcrIQH91qEMbUyzCIrVGsiXX0 20340
moPepGen/aa/PeptidePoolSplitter.py sha256=kqsv4BccxHk9yM0plTNrzja-RN71Y_R0pJj_ijSsDq4 7796
moPepGen/aa/PeptidePoolSummarizer.py sha256=tIWFMP4OL9HGr9Qp1bBi0fBRIn16H_h4Is9xE_a7SCc 14393
moPepGen/aa/VariantPeptideIdentifier.py sha256=AdOmAruXhDi_3hl188qCa_Q0RdAdwyMrJ3nLV0siL-Y 12637
moPepGen/aa/VariantPeptideLabel.py sha256=E1LRdfzaJhU5S9mousyRDPuSnrj_rkL6TlxYlp8aGTs 13798
moPepGen/aa/VariantPeptidePool.py sha256=HLv7IuB44Askxc5WA_C5wiGNDRXGd_gs1LoMVgJmX7Q 6325
moPepGen/aa/__init__.py sha256=kefOtLQGGhUnqklE7xTN01I6bNil3tqreI0NMZk7PEY 467
moPepGen/aa/expasy_rules.py sha256=gHCy3aF0Zl40NjVoMAUe5qW1VUqlhy9gtQn0VsKX0Gc 4267
moPepGen/circ/CircRNA.py sha256=aWgl4QXmdafkuVnxKghlTHbzvs_1bPvoDYmmcF-84m4 3107
moPepGen/circ/__init__.py sha256=IDAmKN7d0RRdvX5kDzMGnKzCNkSU7j8RiZAOxHsNHMg 78
moPepGen/circ/io.py sha256=uIi0MZW6GKHTfuvraHnRGgql06ntOjflKkDV5td5D98 2196
moPepGen/cli/__init__.py sha256=KUZctaoWH6rubyD9kXE2jb81GV-Gny2XMccbYTZnfOY 1420
moPepGen/cli/__main__.py sha256=_ipV4cVzM8HJo-23mj9Zo4dr9gHXCkcpoOAuSHdw2E4 3712
moPepGen/cli/call_alt_translation.py sha256=rDE5ZR6mdMLlijmZL4yrPIJIN__HRGTOaZHIBwyHDhs 5354
moPepGen/cli/call_novel_orf.py sha256=oPJ8i3ZduWgGPks2N8phUTKLmC8DNXnf5guy0-dxPJg 9302
moPepGen/cli/call_variant_peptide.py sha256=wFiCbfbERGOvo3i63N79fvp91su_JWhNMmOZJIj22S8 33522
moPepGen/cli/common.py sha256=7OuiM9UYSa2CDgFVA908H1xCYZkNxCa4G8w7Ot-MUEE 13965
moPepGen/cli/decoy_fasta.py sha256=ms9Fw_zhDVN3elu1nn5ZRf8iJgFPIRyBwchC1lg3UeU 11881
moPepGen/cli/encode_fasta.py sha256=fP2SpXJbmTrl74AZ5ilgnHscJXPug1McLFC3lsYtCqE 4436
moPepGen/cli/filter_fasta.py sha256=pn6bWWLlkazb3vN_DmiortLiUFiQa4YEllVij5vSTaI 7493
moPepGen/cli/generate_index.py sha256=KXRI6yVLIhSRClI7dCYXrbJhDMKYrdf7FNKFu9mE7dM 4485
moPepGen/cli/index_gvf.py sha256=nMu2xUMZUCracs-9pRu4sBpWUCe25qH-6KHuh6f5g-E 2072
moPepGen/cli/merge_fasta.py sha256=nPVScqRaPG7EePeUGzYzAJOP_legZlXHy4HRmiCuc10 2560
moPepGen/cli/parse_arriba.py sha256=Cd9gYCUvHPhhH1PrqXPCJqhBZLhiK2uLFBezLWRb_BY 3698
moPepGen/cli/parse_circexplorer.py sha256=ULtZfaCT4q2L2yZ2pKSYiizvZ0IUvb8pVhgdiPvX_nQ 5232
moPepGen/cli/parse_fusion_catcher.py sha256=bAFVCKUDAg63yklKDjESAenyqgdLjuXZ51ePOtcgqPc 3252
moPepGen/cli/parse_reditools.py sha256=BEb4GGz6t6pwvkLWh2rORrMa5OMd_9jE1QM5uKuaZlI 4663
moPepGen/cli/parse_rmats.py sha256=wRfGv1zcqiAqAPjO553srwEwpo7Oie48HYE1hmhSPLU 6071
moPepGen/cli/parse_star_fusion.py sha256=i5LCOhT4DOKhz3KbiWFSCw2zRG1csaRXVO053pwT3j0 2950
moPepGen/cli/parse_vep.py sha256=z3z-wIu5RPoy44d6pYsWjsapPtGaob5B3qYBNxLj23Q 3982
moPepGen/cli/split_fasta.py sha256=uvKcx-FA9dcvl5Uq1mZjRPSXO1z1u8LmDtV-0TB1IJY 7102
moPepGen/cli/summarize_fasta.py sha256=3PvrhHvslTr8dDKAJqWHrRlzZYMifVMCuUfiQQ4octA 8459
moPepGen/cli/update_index.py sha256=aTmjyeW5pMCBASUeYr98EOmyzkM0r8atNprIdN24l_4 3114
moPepGen/data/gencode_hs_exclusion_list.txt sha256=Smf1UojZ4z0dVUy9XdeNlYwG3LvaA5XEaD3vhTGHTCE 259
moPepGen/dna/DNASeqDict.py sha256=dime6GLJD2Hg07hFUjHJsfz7wRjWeHlom68g34cTd5A 1540
moPepGen/dna/DNASeqRecord.py sha256=hrkgeqHIBTWnVX2ujhd8Chleyy4zZ6GZGVJuvJRcPLA 16648
moPepGen/dna/__init__.py sha256=YHiM-tY5ft5SM1I6bH49K1QSake4xSyU0YuExkt4VJI 150
moPepGen/gtf/GTFPointer.py sha256=opWu9-Q0QrP1iE-7UbOFCocY8ltn3hMamrHpCMSbnAA 9727
moPepGen/gtf/GTFRecord.py sha256=ARBuU1KOI_hz9MmEf26bdaV7781X0tBBsOKyYUO0Zi0 2818
moPepGen/gtf/GTFSeqFeature.py sha256=8A-iwBNzjvFupziRJAsPhQpxCCjfrtSxoUsVQkUVy44 3443
moPepGen/gtf/GTFSourceInferrer.py sha256=693XYp5O0I_gERq91XrLKcrtY6HxCyhL1moyNwW0O9s 971
moPepGen/gtf/GeneAnnotationModel.py sha256=4h0QtubdzoC_Dtoksghbt_Wsk7cTC7dQxWZ8qYG0Z4s 1919
moPepGen/gtf/GenomicAnnotation.py sha256=7NM7qvnUnUM4lrUlUgrj7E1dTHkZ8iwHYItcP6RoKSU 20945
moPepGen/gtf/GenomicAnnotationOnDisk.py sha256=Gx-3sODzsCm65_82CJ2defHXw4pcIynLx-ZSSeg3IyI 4782
moPepGen/gtf/GtfIO.py sha256=3cfqfbySfCExzq6IMZS2bgn7RxSE3IHopzsreSKJNVg 3980
moPepGen/gtf/TranscriptAnnotationModel.py sha256=jHRZcyj8CkYxNW1JdEOneHF2qryyQqGOuia-Y3Zk_vA 17134
moPepGen/gtf/__init__.py sha256=x_wIZ40ivMVJ0D16z5fcATItABDa2zWAsSZ_VqZ8FrU 303
moPepGen/parser/ArribaParser.py sha256=zCUJTC9kvdkAygrSMC-ao_ikPBHZViWacYkxQshh9_A 10604
moPepGen/parser/CIRCexplorerParser.py sha256=TH03J5sb-8OgyBTYZxeiSZwpZrzwGhdA2PTgIuOh9pc 6461
moPepGen/parser/FusionCatcherParser.py sha256=_CucZV02qu3B6ATYMH44Xb_8PYkuR31pyAmEitiZLEw 9417
moPepGen/parser/REDItoolsParser.py sha256=HCWAGNGX_E-wfcuJOWG5ym40x4x7OUoqzgdcK6V6a5A 7067
moPepGen/parser/STARFusionParser.py sha256=0Lq3RzOCJlGJd-WdLPeQEzqafpS1gbTKxFgtMgDAtVc 7365
moPepGen/parser/VEPParser.py sha256=14aDuceAgPzFL-cZZQ9LjUAsq3B6e01PU-E6BxzLvRo 8879
moPepGen/parser/__init__.py sha256=9veP1fbLr--UKwzxUni4dDXW8FW4ceyPYcDq4crunLM 272
moPepGen/parser/RMATSParser/A3SSRecord.py sha256=21LTcYRM9J0iHATeSALsW2VPp8LHnnIQWdOZEf3NVNc 6444
moPepGen/parser/RMATSParser/A5SSRecord.py sha256=9HPskfXX3YBeD8DaKF6_Gthtc8mNywIBVyFlun0Cbqo 6443
moPepGen/parser/RMATSParser/MXERecord.py sha256=EduyCK1QH5JDYo9Raiashwjsd2SCyAjfJwWAH865cck 5927
moPepGen/parser/RMATSParser/RIRecord.py sha256=zjmp3APr8_bJG3nD1dUzmeb00zXcgiVJHkX-XpIK4h0 6143
moPepGen/parser/RMATSParser/RMATSRecord.py sha256=qCYujnUwOk2xsyy7Wet5w6uULxuTFDtCwwhJKYC6hBk 563
moPepGen/parser/RMATSParser/SERecord.py sha256=iqa3oWVKk-xIA_CPsI5EhfajjnkCbhcs6Dik5NFHYaw 5807
moPepGen/parser/RMATSParser/__init__.py sha256=LmCm5mS8-eRmgYG1JrT04gXWNJmnC8uskRVHW6V4cZ0 882
moPepGen/seqvar/GVFIndex.py sha256=KvduiJeMPYhP04dy13aY736x5VKFRjLBRwru4eUgabU 2947
moPepGen/seqvar/GVFMetadata.py sha256=qmw6B_AANBEenzcNBkgtnhcC6HFcdGRIDKX9-xpfA0g 6430
moPepGen/seqvar/GVFMetadataInfo.py sha256=W76zncwTQqQpTTXbe26SzArtyNwMMrm3hSpS5-O1BnU 3077
moPepGen/seqvar/SplicingJunction.py sha256=P5EQMW60Mz5qWBagdXUQRaoNRMu-z2rhLCPURUsppt0 22437
moPepGen/seqvar/VariantRecord.py sha256=xPWiRnJm6ay90FLPUvR7RxwnEBSB-Z9tunQSSJ58iS8 25737
moPepGen/seqvar/VariantRecordPool.py sha256=ev1049JACGdTc8haoHLWGEIC85g5EHyAmCf-rvHgNj4 9004
moPepGen/seqvar/VariantRecordPoolOnDisk.py sha256=oQlIypPyha3F8j6G597w6zhDGLyWIZtfBmpcfbpljj8 12369
moPepGen/seqvar/VariantRecordWithCoordinate.py sha256=TQeRaOrM9gVen-JAJmLp9opyve3_Rq4qQpXhlw_g0kY 3818
moPepGen/seqvar/__init__.py sha256=Cnw5jrxKMyi2jtJ9VrXHpYTFn4kbDZet6x8GSjRfEIQ 721
moPepGen/seqvar/io.py sha256=NJrqjzE49yyRrtUNkPn9JQvrloEkoNO5YoujQeNPRpE 4296
moPepGen/svgraph/PVGNode.py sha256=JXFARjcV_ZeNSYmarg7SojlXvYyjY5fSdLfoCfSLfOA 49558
moPepGen/svgraph/PVGNodeCollapser.py sha256=vslj0JYbXY9XoDR3XvGzuPBYWtJMw_4Tb390JsDDvbQ 10961
moPepGen/svgraph/PVGOrf.py sha256=vf0ik0j5adP7cmzf6bL_mSgp5ijZmjAh9Uj6xl9Jx28 9760
moPepGen/svgraph/PeptideVariantGraph.py sha256=2kqt5PC9C11ZqBwvcCSDyl3XK5RjSJ2Tp4jJ_IFdPxM 63207
moPepGen/svgraph/SubgraphTree.py sha256=tNZBsT_VR1M0idQ7yg5Y8TvgZTJTpjysq0Bdp8Wo2MQ 3289
moPepGen/svgraph/TVGCursor.py sha256=oY_SHo0nxV5rjroMVqO9nPFSJjEMKH01TB1zItMe7ZE 448
moPepGen/svgraph/TVGEdge.py sha256=bPOF5_6C3pwBgkxWS2d-fRVdkRAA9M1QmHnRvlAWvTo 1110
moPepGen/svgraph/TVGNode.py sha256=qn_VhTPvEI2elw8fnkh6X1Ss9IyNASeadTsiJCQ2kbY 35241
moPepGen/svgraph/TVGNodeCollapser.py sha256=oRL5ne9noz5ZZ3IsIfgHJfHpoWCkx0ZVJVp8IhZIZgc 3694
moPepGen/svgraph/ThreeFrameCVG.py sha256=1Ikgd4H9V2js-52NFsvF2DcPJpR_MR4mOLfN-NbziiY 8636
moPepGen/svgraph/ThreeFrameTVG.py sha256=hMgfMN6PR0Jf5nwMPHsAoA2coIMl7LqIEWlnL1aWSFg 85064
moPepGen/svgraph/VariantCombinations.py sha256=dOaLW3Z0IfFwdGpu7gyE5FuhoIqJrcOvzS2cucubC7E 2099
moPepGen/svgraph/VariantPeptideDict.py sha256=H_vbypE0_mtoHZWjsrzvPNBxyiUse8s93QEXJ3mXz_4 37766
moPepGen/svgraph/VariantPeptideTable.py sha256=CccAWdGvIToGwjUcCDnHcJS3I-xK1JeX0SR01Y4qM4M 6184
moPepGen/svgraph/__init__.py sha256=a9Id4IMj9v0EDX1tsJlv4aUEKtAcUWPuNdGwpFVkx-s 481
moPepGen/util/ResourcesMonitor.py sha256=LVA6vBXJSRIf6OqYgeElX45otKIWC-fCuzKaJaGKFtI 2325
moPepGen/util/__init__.py sha256=FAhj4I5ejpzHk3o2Ehutyl9mnfwCw3rvhSSRFsf_ews 413
moPepGen/util/__main__.py sha256=4uAinIN3uFiVjO6AvGUHfsPvkoaJMwUS7gR6cMXUpBw 1201
moPepGen/util/add_fuzz_test_log.py sha256=Cg5tOXlXAEuZpX2_kebQhaknw-0fHjc3pG0GuYlbdxE 6996
moPepGen/util/brute_force.py sha256=r7xKONSAcS_LBDEXSq6A8uOJlPR9s10wZbLeWUKJbVE 57504
moPepGen/util/brute_force_novel_orf.py sha256=mmGeE1Kx1361XntQrdgN7A0PfILmmlhuO-ObNUSdu64 3298
moPepGen/util/common.py sha256=prpdNu69sdnVFo0y8tWFvlL_0M1KbeAGLdjrpm0wSV4 710
moPepGen/util/downsample_reference.py sha256=78ix6mj6aL3cQ0nqzZVdi-ZvnFMcBz0B6suWQle0nwA 13829
moPepGen/util/extract_gvf.py sha256=dey86Q6jdEDPnyLE8gliLTBycVTKIddi3d_pktIz3Zk 3001
moPepGen/util/fuzz_test.py sha256=H2RpIsD-30GnBRA-vcqL4bIsWh5LIz_wi4LcPbxrw5I 32497
moPepGen/util/validate_novel_orf_calling.py sha256=ZYHgaBv6XDnthy7HW7OBWIlqp1F3S0dA8mqgVxkPWsA 10591
moPepGen/util/validate_variant_calling.py sha256=6JAYewMwGHahXfD-3ArbZOmzVvVOEpypgYy4KWy6Vso 7593
mopepgen-1.4.0.dist-info/LICENSE.txt sha256=gXf5dRMhNSbfLPYYTY_5hsZ1r7UU1OaKQEAQUhuIBkM 18092
mopepgen-1.4.0.dist-info/METADATA sha256=asqvcZzDGVvipsELXRTqr1InMwikU6gF54d6v23Dr8A 2580
mopepgen-1.4.0.dist-info/WHEEL sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ 92
mopepgen-1.4.0.dist-info/entry_points.txt sha256=YM5iDVHVMvWw5bXzBAlgU0H21cGmwpwZx0y9yliUOYs 100
mopepgen-1.4.0.dist-info/top_level.txt sha256=w-WZt606wh54jUhu6UIrXgjCVoGwuUYBXpf7Kn8LKmE 9
mopepgen-1.4.0.dist-info/RECORD

top_level.txt

moPepGen

entry_points.txt

moPepGen = moPepGen.cli.__main__:main
moPepGen-util = moPepGen.util.__main__:main