omicverse

View on PyPIReverse Dependencies (1)

1.5.8 omicverse-1.5.8-py3-none-any.whl

Wheel Details

Project: omicverse
Version: 1.5.8
Filename: omicverse-1.5.8-py3-none-any.whl
Download: [link]
Size: 2149404
MD5: 555a465d4a87b28e335b53f4536cdb7a
SHA256: fd950068b2f77a529a8e4c6e7fc40acea0ef729a8808ace64df674d06916eff8
Uploaded: 2024-02-23 21:40:58 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: omicverse
Version: 1.5.8
Summary: OmicVerse: A single pipeline for exploring the entire transcriptome universe
Author-Email: Zehua Zeng <starlitnightly[at]163.com>
Project-Url: Github, https://github.com/Starlitnightly/omicverse
Keywords: bioinformatics,deep-learning,scRNA-seq,RNA-seq
Classifier: Intended Audience :: Science/Research
Classifier: Natural Language :: English
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.8
Requires-Dist: pybind11 (>=2.10)
Requires-Dist: hnswlib (>=0.7)
Requires-Dist: ERgene (>=1.2)
Requires-Dist: numpy (<1.24,>=1.22)
Requires-Dist: scanpy (>=1.9)
Requires-Dist: pandas (<=1.5.3,>=1.0.3)
Requires-Dist: matplotlib (<3.7)
Requires-Dist: scikit-learn (>=1.2)
Requires-Dist: scipy (>=1.8)
Requires-Dist: networkx (>=2.8)
Requires-Dist: multiprocess (>=0.70)
Requires-Dist: seaborn (>=0.11)
Requires-Dist: datetime (>=4.5)
Requires-Dist: statsmodels (>=0.13)
Requires-Dist: gseapy (==0.10.8)
Requires-Dist: ipywidgets (>=8.0)
Requires-Dist: lifelines (>=0.27)
Requires-Dist: ktplotspy (>=0.1)
Requires-Dist: python-dotplot (>=0.0.1)
Requires-Dist: pybedtools (>=0.8.1)
Requires-Dist: boltons (>=23.0)
Requires-Dist: ctxcore (>=0.2)
Requires-Dist: termcolor (>=2.1)
Requires-Dist: pygam (==0.8.0)
Requires-Dist: pillow (>=9.0)
Requires-Dist: gdown (>=4.6)
Requires-Dist: igraph (>=0.10)
Requires-Dist: leidenalg (>=0.9)
Requires-Dist: graphtools (>=1.5)
Requires-Dist: datashader (>=0.14)
Requires-Dist: phate (>=1.0)
Requires-Dist: tqdm (>=4.64)
Requires-Dist: pydeseq2 (>=0.3)
Requires-Dist: mofax (>=0.3)
Requires-Dist: adjustText (>=0.8)
Requires-Dist: scikit-misc (>=0.1)
Requires-Dist: metatime (>=1.3.0)
Requires-Dist: einops (>=0.6)
Requires-Dist: tensorboard (>=2.6)
Requires-Dist: scrublet (>=0.2)
Requires-Dist: scvi-tools (>=0.20.1)
Description-Content-Type: text/markdown
[Description omitted; length: 9276 characters]

WHEEL

Wheel-Version: 1.0
Generator: flit 3.9.0
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
omicverse/.DS_Store sha256=TPLc3I1-ZgQWu4B8jhg1rkTY4fBer3yBih2iHMTSdEo 14340
omicverse/__init__.py sha256=7V-WUBRfc_zuufmmiZy4O0MZu5ZlSuoA6e_gP8M2Jbw 857
omicverse/.ipynb_checkpoints/__init__-checkpoint.py sha256=1Hw3nJiF88KRq8837kdHnPTPohobf61JPgSbSN-ryrM 320
omicverse/CEFCON/.DS_Store sha256=BbgfECi2FLH4Oe90WLZlm_CQXpYyKVA5pDIv7CEEnOU 6148
omicverse/CEFCON/CEFCON.py sha256=zv7ej2xe36OV5NPYPZIMC2sPHdatuwBoULUfHNwKQMg 5763
omicverse/CEFCON/__init__.py sha256=WG0ejOkld18GHt50qghUU8EWW5gRBwUEx9ELJzKfMjc 578
omicverse/CEFCON/cefcon_result_object.py sha256=882kQAzakgT9HKfmp1tAxzZ7FAIqtq_CKF2NAaEgxB0 20088
omicverse/CEFCON/cell_lineage_GRN.py sha256=1m3GgwNSiALfZX5_X225Hgjxl5UH2bS9V_lTKZeQGNk 25206
omicverse/CEFCON/datasets.py sha256=tEaH_9StvaJDpUGLt4ebme9DXimT1RVFylT1SaJGyjk 12749
omicverse/CEFCON/driver_regulators.py sha256=hzli3S7_6TDrsZDDGagYZXuDf-918fkdklwU552FU-w 19274
omicverse/CEFCON/eval_utils.py sha256=SbGmzP5nIDyAIarz5DuUyNLGsVObS5HR5xwfLKFZ20E 10834
omicverse/CEFCON/utils.py sha256=7xt14aBwfWpCXL5J49SE-br7xw6_apytAlGhkZ8faeg 18943
omicverse/CEFCON/resources/__init__.py sha256=aUarWgSiViVLNV1wHEhaBmsIYaia7RCVRRiL7HFFvfU 1447
omicverse/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt sha256=UcDFclMn875IwFISd5RRnYLlkSWtWgtf96DGUQwEJ2U 10200
omicverse/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt sha256=Nztk09vAWKc4i3lbOWzSjd2_eUgK0csh7J-nqPyTwn0 10199
omicverse/CEFCON/resources/mm_mgi_tfs.txt sha256=aaXnDA_PFkQ-LG3HdzXFtRGJZPPKpuA-6tK26c_OGHA 10775
omicverse/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt sha256=9Xrt0DWUoQNjyFkbGLWTWsaumXNoGKxc-8-BWTwHkmY 10219
omicverse/SEACells/__init__.py sha256=At3qxBCbDpBaNw9n9FXWj9vsmeF6PTjt9qCcRvtujLE 43
omicverse/SEACells/accessibility.py sha256=c0JZJS48X1KR6DUHfyys7ciWf666qN8w_PvyNfS0sWA 4422
omicverse/SEACells/build_graph.py sha256=zA4RvknFf5vvNlX6Qxrut9997-ZXJeoEULvDHtx9Huk 6700
omicverse/SEACells/core.py sha256=Z49-FCmoL-O6dYXCTrUP8pIM1EQ5lnY8uw1doPaQyd8 8749
omicverse/SEACells/cpu.py sha256=CiaEmUFCfickjxvsLAXHdHF9O6M4sDk3FCJp7roALzc 28399
omicverse/SEACells/cpu_dense.py sha256=CM-ZS5vLQ3DmlrO3xa4saA_u5iZ8Jl2F8JemdfQnIwA 20804
omicverse/SEACells/domainadapt.py sha256=0lRbsdpXh3ZBsV8l9015ih9nVpuzbWT6JmNfxTkdNPg 4565
omicverse/SEACells/evaluate.py sha256=L-PCDk_n2IrFkGeRRYqVYY2aW70vEdZP_0z1hu_EPo0 5112
omicverse/SEACells/genescores.py sha256=4kVWpHu6qX5gQ1LD8fMaYqHPVC45lkXCmr3G5iDErGc 12141
omicverse/SEACells/gpu.py sha256=-3BCopKxHzBaGzj863tDCPMhPkV_iYAcnDadIuP09rs 28340
omicverse/SEACells/plot.py sha256=TnAfMYbShO-SCv3uzAxRStrURh4zJHrk7OTCpGhl83Y 5030
omicverse/SEACells/preprocess.py sha256=bSquJyiPok55Sv0KsyLEYIepsGDvxGY8i7HqHd26Nxw 302
omicverse/SEACells/tfactivity.py sha256=gyxjKGJulFOcVlrx-QSdAhMFi-qfYVbX2VRXe9umgQY 8601
omicverse/SEACells/utils.py sha256=nGUwmSV_ZgKl1e21uD5mUfhWtBXaw5woORWi7T65s-8 3220
omicverse/SEACells/version.py sha256=4OkE0ip9KkRuWv6X07e8bGGgCDuzdoHXDQwhFUaqWkg 119
omicverse/SEACells/Rscripts/chromVAR.R sha256=elKQf8QG0lVZi3nEQVjWkXUyCGiUxlVr3FWKAOX3kB0 1987
omicverse/SEACells/Rscripts/tanay.R sha256=jvb-PmDPo2OXfWJumDdD7PmKPTuovaimHorEX8ITH5U 87
omicverse/STAGATE_pyG/STAGATE.py sha256=IiTrI68wOxuOF1dA9i0dj97pkbm6MudNT4Bdrz9A-5I 1624
omicverse/STAGATE_pyG/Train_STAGATE.py sha256=mX_K6pfsaQ6An2UT1Izz74iSeEwVMFtOq3W9QAmV76U 3096
omicverse/STAGATE_pyG/__init__.py sha256=jxDqtiYeLk7KvaE_b8MXH0M8J2ANNtGZ2e1gsOxB7dQ 373
omicverse/STAGATE_pyG/gat_conv.py sha256=eephYcqfDRmE2_3HzyoiVnByiN5JxBa8QBC-GpcsrjI 9355
omicverse/STAGATE_pyG/utils.py sha256=pcjQvtyETZw90LZtL0ZnjTB5J5uap7XLeEcVQmtwHYE 9881
omicverse/STAligner/STALIGNER.py sha256=21QJWQsgwQf-B9PJ3SlnKXroV-lC1d3EpnvT1zJXuZI 1629
omicverse/STAligner/ST_utils.py sha256=Z2XRhZR-l84SQpBMdfsyFpnArzEpnmCw9kxtK7jQ3Sk 13944
omicverse/STAligner/gat_conv.py sha256=AQKeZvFYM7sGoXEIqi_bnX1CfdpYbg7lmwLdZh522dw 11855
omicverse/STAligner/mnn_utils.py sha256=f-mYTbOV1sXctGexEso8vdM0Ci4BjK_B4ItDxv_tPp8 4830
omicverse/STAligner/train_STAligner.py sha256=R4TgfMzFG41__u3OA2wnlxIa2bwqzHyokgD06TLCVQ0 16871
omicverse/bulk/.DS_Store sha256=2Q_FzNfcdlWXQR_dW8-_lTTcbC7yTZIa3imkAOs9cYU 6148
omicverse/bulk/_Deseq2.py sha256=XYs9vgt7xF1MUJMJiG1Wsk-jH3TBCunQgTKuxle56So 25320
omicverse/bulk/_Enrichment.py sha256=8pcQ6cw9soHGlD5I2Vx7x22EA5Fe2Z2h6UHeouB9fHI 21289
omicverse/bulk/_Gene_module.py sha256=ggph2YsThi0bcCFgTpr4r1_ECZmrihX9LwNWb_ftUZY 29240
omicverse/bulk/__init__.py sha256=Eg4KD_aepVBYdz-oBkVcQFb-N8vxQ157Z6YHE0FTgRI 629
omicverse/bulk/_chm13.py sha256=hlWEJRsQ5ALxyRRyRxZkMKSfhS3jtg2nBPQVhc1lE20 633338
omicverse/bulk/_combat.py sha256=6M_46DEQvuaiZXTH_xK00ry79qrUHhWU_PGzjehk5EI 502
omicverse/bulk/_df_apply.py sha256=cWlzMadVi1oOXG_SbSjoqFZ5vFgOVt3BeR5tPbJsYP0 1633
omicverse/bulk/_dynamicTree.py sha256=UDg2nhG6_y078KAuy-nGWmTWya6uVxnOkyUQlZiO5kc 42804
omicverse/bulk/_network.py sha256=kVuL7PyodaIdOJ1WxBWVYw2HwCNl-44ZdS8nVT1uAzE 6919
omicverse/bulk/_tcga.py sha256=MnGoDqW4ZHADMqVoOL-8fc5C9NIMUBSzGRR0Cg23P4o 12290
omicverse/bulk2single/__init__.py sha256=t7BinQDNNzNBH4VzCdDwfkHuI9wmoW9KGDD-7VTh4LQ 275
omicverse/bulk2single/_bulk2single.py sha256=c_4Z8REDTIJaw-NZfSzAU0dHixkHrxaz4hjb0Rybjek 17858
omicverse/bulk2single/_bulkdeconvolve.py sha256=U8rOIjNom2iRMhSIeXoK53t436QEmOq2izASczYY7sk 829
omicverse/bulk2single/_bulktrajblend.py sha256=8Uqnxc8x5KVKHvrR3ran7IdJSF_qJ_J7yyJUTJkDNvQ 15889
omicverse/bulk2single/_map_utils.py sha256=L-7rk-iB5sFplKgvjwdQWjWzRNu6aw_lak50kS69elE 29806
omicverse/bulk2single/_map_utils1.py sha256=iDA3g2-gCw8QyFDagPaAwhprx2KpKNj9bIN8wtlcXPU 24978
omicverse/bulk2single/_single2spatial.py sha256=EFZHi4NqvXg6nYzSrYly5eyBjjL1HzuRugkuGyTbe4Q 12746
omicverse/bulk2single/_utils.py sha256=jYlK8zSUGJRjO236abMMn-LbHk3k6zRWg0iV-MsqIeU 10462
omicverse/bulk2single/_vae.py sha256=BFd5WPTIAcXJwoFUJQBcVUcRoEFVJBOAzt8NEPXVo4g 8560
omicverse/cylib/README.rst sha256=gBL79vJTcBHYAbH0d22MwixhUbC8utIJzTiUMg7NESI 48
omicverse/cylib/__init__.py sha256=hTqIchGwUJIH-__yqgppSZ3HAeZ0Ie8wGluBts0z-5Q 25
omicverse/cylib/fast_utils.py sha256=s5k20LlXItCJ_aZxspH3d_SgRtcBe4gWyPQUciY_lnE 3338
omicverse/data_files/README.md sha256=8-OsQ068w7ll0M9e0FgFEqeW2x7F2o-gzPn32-wGtuM 1313
omicverse/data_files/apoptosis_human.gmt sha256=90luxJc81X4xbzMoGhQH3UOSdbs8CFRMR1G1BNxPPUk 613
omicverse/data_files/apoptosis_mouse.gmt sha256=b-1JE2crAobL4hal6O6SIXod5eItSt7EiU_zA_oKnhY 598
omicverse/data_files/c2.cp.v7.5.1.symbols.gmt sha256=0kzMPH7Lm13lSwrCmm23jQRlgS3Rd4w2-hnlPprUjz4 1277787
omicverse/data_files/cell_cycle_human.gmt sha256=F_31OOXNaRmF2vsRb10Epn0k8SZw4ZiE4X1obS_d1Ik 597
omicverse/data_files/cell_cycle_mouse.gmt sha256=okZKd79sl2CLeoyJ5mGAkoOlp3BuCUu5Hc3rbz6gBP0 597
omicverse/data_files/emt_human.gmt sha256=FwyWHkeHkJ_VIaNMncPKpqJAmYUk4H_dfzSFaNRYoLo 222
omicverse/data_files/gender_human.gmt sha256=ljTCJbpmylJ1NogwNAJi4Jqnh4LGeIW0iVhvA3zokHs 230
omicverse/data_files/gender_mouse.gmt sha256=csIUraNAXZpOh7HCaImXY2YO3qbSdNPuzn5YKh7Q10M 142
omicverse/data_files/h.all.v7.5.1.symbols.gmt sha256=3g_e44ryYRooSXP1Zd8amL-iOFrs17ou4_5RII51O0A 48244
omicverse/data_files/human_lung.gmt sha256=YII34BOS5fu_nuenuYDfJZTXKJIRJakRwj1itad2eOM 2725
omicverse/data_files/human_t_cell_markers.gmt sha256=Nx33pMcD-B8-uddEfMxsCVii9d9Gu5C0fz0FNr2dmlM 743
omicverse/data_files/mitochondrial_genes_human.gmt sha256=iktNyyhct4ygV8iJ0Y6Y0ELVuttl5JMPXm5LXciwPp0 929
omicverse/data_files/mitochondrial_genes_mouse.gmt sha256=jhx1dDDj-yizDppwTnOvv-DSImo4ExPqZa5hA-hBhMQ 930
omicverse/data_files/mouse_brain.gmt sha256=ieWfGlvz62IxhwCcVsy1t859T1o4UET_B6dQQAA01oE 706
omicverse/data_files/mouse_liver.gmt sha256=7Kgl8yfa0pLCE-6F1pM2aDQ19YZzDh-B6VK1_33tCp8 1931
omicverse/data_files/mouse_lung.gmt sha256=zTDr2tpnz4WumXvrColhyVypBiTF3pkUbThyF--pBsM 4068
omicverse/data_files/ribosomal_genes_human.gmt sha256=Zxz9hQN-wP2cRjNE_mz5OsGqGi9V8dva2dSrZa7OPIs 787
omicverse/data_files/ribosomal_genes_mouse.gmt sha256=P_7MZ55FErZhuUAp0KF_K3cpOo0Zq8AnxU0ZIC-d7gQ 801
omicverse/mofapy2/__init__.py sha256=qAv--6i3TaVNiQrRO74KS0IBCv5aP1hQcW06qvKGHEQ 55
omicverse/mofapy2/config.py sha256=79LaBKvCGHunIuDMk24mCuOq-X5QvNtVI_WU3YRY6jA 405
omicverse/mofapy2/version.py sha256=bSuLoXsCr0tyq73AR1msMfHVln1UlaeZ5tDociTj1ok 22
omicverse/mofapy2/build_model/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
omicverse/mofapy2/build_model/build_model.py sha256=OKg64y_VvloIyZ3qxhw7khyPqS76CnFRt4AUUNeO5y8 13189
omicverse/mofapy2/build_model/init_model.py sha256=YlbpNYc6IPVSf_RSbWvFtwBKarJYis9qaJOmiqs3Eio 28425
omicverse/mofapy2/build_model/save_model.py sha256=vg9QY6B3emAy4loIzje9ovPiwOttQYxP_2tGpIZdBD0 25076
omicverse/mofapy2/build_model/train_model.py sha256=xuGiBwTHzX2s9KAQDqoycezT6rXgfyoepLZ4wwy7FKU 637
omicverse/mofapy2/build_model/utils.py sha256=abR8dRKYFI9lBag9XRa1C6PcLXOgJWarQ5gz7vmQZkQ 3366
omicverse/mofapy2/core/BayesNet.py sha256=ObMm7K-loFWj2A4mDA9hVsGa9n4_FoShVs7iqM71DDo 26036
omicverse/mofapy2/core/__init__.py sha256=alIDGBnxWH4JvP-UW-7N99seBBi0r1GV1h8f1ERFBec 21
omicverse/mofapy2/core/gp_utils.py sha256=dUuHgYI-StRewQcayLtqVikyeojKhxcsMOrDbuD4uT4 5591
omicverse/mofapy2/core/gpu_utils.py sha256=jxUZimbaKgIVGXRgDSWyM2mVmkufDMMVc-yJyEumzp8 1765
omicverse/mofapy2/core/utils.py sha256=1qDiIyeKsS7pLqpbPY9X3Z-6cy-ObQF34IqtjG4eT38 3764
omicverse/mofapy2/core/distributions/__init__.py sha256=22zpsvBormV3D2VS1ywMDnycgr3Onxn-ZWuKSIU8pn8 448
omicverse/mofapy2/core/distributions/basic_distributions.py sha256=TUDPvP9x7le_4sarDMgG5bumMQsDvIrY9-l-TmtdG94 3923
omicverse/mofapy2/core/distributions/bernoulli.py sha256=5FlK4qO21x4sBlpPlQ0_8bwcBVjkBYtJTYtk7nXaHtU 1301
omicverse/mofapy2/core/distributions/bernoulli_gaussian.py sha256=2Kmrs8W0ve1QtpfqrfhyNi0Ova-RgGiF4OuaBws1zLA 4709
omicverse/mofapy2/core/distributions/beta.py sha256=M8KEwfUNMTJPLIaIA9XHFI86IqdFUmrpOSy_qtrtuJ4 1859
omicverse/mofapy2/core/distributions/binomial.py sha256=XHQjcgWFjs-1v4hz40QDDafFr5vGTQqm9tZD8gm2EMk 1928
omicverse/mofapy2/core/distributions/gamma.py sha256=q3Wnrh9TV_kKB3yo5OqYxe3bqofEoGP0LO5UUwz37ds 2061
omicverse/mofapy2/core/distributions/multi_task_GP.py sha256=UTOScYCd_873k4yw3mJqpfQbpbuLLdRvduqWpEE6ucs 38150
omicverse/mofapy2/core/distributions/multivariate_gaussian.py sha256=0JbwA1cV47MGTj2ZOorhlVaLRm_h-y03rHkTbvGeEJM 16083
omicverse/mofapy2/core/distributions/poisson.py sha256=T98xKiHKciV_A1yUaobkUM75cmiVNFcJklFJTg5xg6Y 1663
omicverse/mofapy2/core/distributions/univariate_gaussian.py sha256=7vCzrWFnl8sxN0sj_s4IRsn4Xbghh4n5E0oLnj9iYY8 2223
omicverse/mofapy2/core/nodes/Alpha_nodes.py sha256=PThH0bx0E9akWZy3AQN6d7FCXPBh7xKrapzPTEKFwIA 6291
omicverse/mofapy2/core/nodes/Kc_node.py sha256=sW_XZmdw7YuMXNogwGY8iz-Lc6Z-GvsGugJtnQaNLCw 4646
omicverse/mofapy2/core/nodes/Kg_node.py sha256=KXdV3dBM6vYuQLbULuERyO3FE1zuZMqp49qO0NKMAe8 3581
omicverse/mofapy2/core/nodes/Sigma_node.py sha256=MB7CJxfCaGYIUAo00FnYEFBBjdRhmWQRY-8feMNJqTI 49309
omicverse/mofapy2/core/nodes/Tau_nodes.py sha256=iHUvNkYD8YsEut1MYqknX2tpSuh-XKMWwHC-cxW-CmU 5327
omicverse/mofapy2/core/nodes/Theta_nodes.py sha256=PBa5wFfnDMHTpbzThOgOaOVDFEXiD5pyknFNu3AjzPs 6551
omicverse/mofapy2/core/nodes/U_nodes.py sha256=pEBfbA-4i_9vbYwcWtqlHR-FR4gHaoWn59ZgL8-NyGI 7911
omicverse/mofapy2/core/nodes/W_nodes.py sha256=01J0XcC4f5xYvET5kv3VoDghkdRHAe8e5sZXhbrrFIM 10037
omicverse/mofapy2/core/nodes/Y_nodes.py sha256=NjvlaqDEvFAlj3EIrBN9tRAMnRk00H3NXRqHEQf_rqk 3577
omicverse/mofapy2/core/nodes/Z_nodes.py sha256=ql8BIRbXnHzUbYzxnt3stKyx7FpVR2CArt5yMsax4Xc 15625
omicverse/mofapy2/core/nodes/Z_nodes_GP.py sha256=ojJ9zdS0hJSY7MmbBo_5fpCAQrOEQbhrXjTI1c_1_DU 9248
omicverse/mofapy2/core/nodes/Z_nodes_GP_mv.py sha256=zVmtFsubZpc-m08vN9eQmUaVpXWOsnAvbiADmAGm-80 8127
omicverse/mofapy2/core/nodes/ZgU_node.py sha256=dOhDwvj4UzI7-U1mm3-sRkz4ViyLgq7-Yrp28lanOUk 7505
omicverse/mofapy2/core/nodes/__init__.py sha256=3wjycqAVqgp6bvN58BRrQkUGNtneFIIvCAW0wjwi4Y4 581
omicverse/mofapy2/core/nodes/basic_nodes.py sha256=by4VjuvsBf6rT_Yd-unEFhjFgJ4cXDlMNbrNn3elPJA 3812
omicverse/mofapy2/core/nodes/multiview_nodes.py sha256=IX304re7YUw5ItLHQQff9PoQ51HmGcIDs3ZmZeD2JiY 6837
omicverse/mofapy2/core/nodes/nongaussian_nodes.py sha256=XDvsNx2I5h6yKhmsp0jDXOoCcF6SbWB2TcdMP1D9uuY 21096
omicverse/mofapy2/core/nodes/variational_nodes.py sha256=Yg9rOcCL6rHhetd7hIa38cBygARd8nyoVIWrH-IV-Go 11994
omicverse/mofapy2/run/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
omicverse/mofapy2/run/entry_point.py sha256=9BbUQ4pKdCaRqgrHX0SuMVzJWp4ekJalPvC5O3vYCu0 70968
omicverse/mofapy2/run/test_data/view_0.txt sha256=flkJuQnQD2swkJlfMIaOeUb4GoCBjnfmqNPLXJ0jY1w 324931
omicverse/mofapy2/run/test_data/view_1.txt sha256=NN4_hYrzeu_5OFOCPb1r4SWChzYWBSFe3sW-EyITARY 324642
omicverse/mofapy2/run/test_data/view_2.txt sha256=_3LKVplNDL-EdAwcgqvs1hLHa1ztxOfZtPWi1oj8lms 324951
omicverse/mofapy2/run/test_data/with_nas/500_0.txt sha256=yNtbFSrg8Hz7C6WXlu4d6gJU3go-bqorAsnDYmthqjM 996145
omicverse/mofapy2/run/test_data/with_nas/500_1.txt sha256=YzYBx7P_Exdzf5kxhNnlfBLMEZdpqsDlc7LekxExRkQ 996423
omicverse/mofapy2/run/test_data/with_nas/500_2.txt sha256=xMM9Q0GFmZkC8h6wsjpJ5hlVeLmphYML7Ne1RfHibdY 995502
omicverse/mofapy2/simulate/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
omicverse/mofapy2/simulate/simulate_mofa.py sha256=suAw-Ehcn0pNefcy-i3e-KHljM98taJrazZfsqCbaAQ 6509
omicverse/nocd/__init__.py sha256=sPRgykQ3Wxhvr9ujnM7A6oJtnlrreL2FD2QxXKsFglA 120
omicverse/nocd/data.py sha256=AbaYucpJjetEiHLLXi6FfP2_694uPMF9GFmJLiHWffc 2163
omicverse/nocd/generate.py sha256=ILHt80gOxM4qZzy-kYFQ7wkz6DSvnpn6ATtXELl71U0 1301
omicverse/nocd/sampler.py sha256=dYPp2JjUSJxIkP7bQaUrre-k-65sbJt8tUFqAOrCGR0 1681
omicverse/nocd/train.py sha256=Kwk5QtuvvmCxq-nVmBioSVtixMYsjxY2tZtZf_pW0HM 4558
omicverse/nocd/utils.py sha256=hZm3pozPZj9fO_iePD-u2N1xOYPatoduPxCXJ3WNqck 5051
omicverse/nocd/.ipynb_checkpoints/generate-checkpoint.py sha256=ILHt80gOxM4qZzy-kYFQ7wkz6DSvnpn6ATtXELl71U0 1301
omicverse/nocd/.ipynb_checkpoints/sampler-checkpoint.py sha256=dYPp2JjUSJxIkP7bQaUrre-k-65sbJt8tUFqAOrCGR0 1681
omicverse/nocd/.ipynb_checkpoints/train-checkpoint.py sha256=Kwk5QtuvvmCxq-nVmBioSVtixMYsjxY2tZtZf_pW0HM 4558
omicverse/nocd/.ipynb_checkpoints/utils-checkpoint.py sha256=hZm3pozPZj9fO_iePD-u2N1xOYPatoduPxCXJ3WNqck 5051
omicverse/nocd/metrics/__init__.py sha256=mMC9lt8YvC7jccHADMGRy02bKahwWF9LB524WlhsAic 54
omicverse/nocd/metrics/supervised.py sha256=GaAiNIKghU3Ry88i0RFpP8pBX2gGOEVLDLrqwxaIZkA 4068
omicverse/nocd/metrics/unsupervised.py sha256=R9HTG8XnvSFrdwCKll0lVGHXyo5R2HF7PjXM-PrSo_Y 3214
omicverse/nocd/metrics/.ipynb_checkpoints/supervised-checkpoint.py sha256=GaAiNIKghU3Ry88i0RFpP8pBX2gGOEVLDLrqwxaIZkA 4068
omicverse/nocd/metrics/.ipynb_checkpoints/unsupervised-checkpoint.py sha256=R9HTG8XnvSFrdwCKll0lVGHXyo5R2HF7PjXM-PrSo_Y 3214
omicverse/nocd/nn/__init__.py sha256=YfoFuTrdI4dEB5OpZwVMmyB7bLZXXfnObgSw7GXWEbo 70
omicverse/nocd/nn/decoder.py sha256=CZRQpf27s2Fmir_Mw3426yAUmYfmeIyUXJ4s3w1Aszs 4453
omicverse/nocd/nn/gcn.py sha256=ejYBUvTiCbHdYPqSlWB6JqAOLKne23MLAkXWetx08K4 3505
omicverse/nocd/nn/imrpoved_gcn.py sha256=hMzW4tHKSyck8kURfygvuiUw0bITcp9iT9Af9y7pAmQ 3610
omicverse/nocd/nn/.ipynb_checkpoints/__init__-checkpoint.py sha256=YfoFuTrdI4dEB5OpZwVMmyB7bLZXXfnObgSw7GXWEbo 70
omicverse/nocd/nn/.ipynb_checkpoints/decoder-checkpoint.py sha256=CZRQpf27s2Fmir_Mw3426yAUmYfmeIyUXJ4s3w1Aszs 4453
omicverse/nocd/nn/.ipynb_checkpoints/gcn-checkpoint.py sha256=ejYBUvTiCbHdYPqSlWB6JqAOLKne23MLAkXWetx08K4 3505
omicverse/nocd/nn/.ipynb_checkpoints/imrpoved_gcn-checkpoint.py sha256=hMzW4tHKSyck8kURfygvuiUw0bITcp9iT9Af9y7pAmQ 3610
omicverse/palantir/__init__.py sha256=_GBoNVxb6FzUwdE0U2lG_N5Ub7VBhgOEAUDO-ezLxog 306
omicverse/palantir/config.py sha256=-x1U0II8-RsmmUnPO8uve6eucJ8-TpHgfzQeFPa5Rr8 248
omicverse/palantir/core.py sha256=KHLhowM4UtOZg4PjWMlaFQiTf3qaCZBYnR3PQ5gxGaE 20843
omicverse/palantir/io.py sha256=9glthlGyuGzkayxMc4HYSoyzCQs_kTs9hlKqfJCc7l8 3481
omicverse/palantir/plot.py sha256=0LZLRXIgShht3SSvyZoC6icSLPkVr_eo4gktjQsLpJo 73306
omicverse/palantir/preprocess.py sha256=wma9rnTAqASW7IkXAi9JOUMWIDfZ0Wu72f972CVYIx8 1459
omicverse/palantir/presults.py sha256=t6Yv-iANLrOgq6u8FxgwdbxNmyyNWs3PPTeayqyC8mA 20923
omicverse/palantir/utils.py sha256=Owp30QWxE0im2GeyezwW3vPt8lKWUWlBpjLvDl9wzPc 33510
omicverse/palantir/validation.py sha256=Jnph2BXaP212MFnbnCS3intiNNn0MsVELtP0F7JJDbA 5570
omicverse/palantir/version.py sha256=hys1ssjAaDm-CQ4lXl_39Uph5W5MO0EzbJ3Mg14XWBw 107
omicverse/pl/__init__.py sha256=KQvmTmDpBbmEvU5QGkBkA1UCVJet1N4AAwkiX3O97PA 137
omicverse/pl/_bulk.py sha256=YWT0-Bka-h2D5Dbnm_HdbscvHtxlQo1fscBtFPZkG3U 10364
omicverse/pl/_general.py sha256=7CDU4NkpA4unOVw0HlYT7-eGWHiHa3wzHu-oJViO1lI 330
omicverse/pl/_heatmap.py sha256=79iP3dtN3mEsW3aDhVMO2Qb7lOiU9swdUckX7b27RSs 13984
omicverse/pl/_multi.py sha256=E4YYtbXUTSYIuPKzf-9o0aca2uIUCloANsf0iZiQIJg 7298
omicverse/pl/_palette.py sha256=lLhxBmBhTWcU8uUY5fgF7Tk6iMd4jZO1tpvImLjcYZ8 2921
omicverse/pl/_single.py sha256=D6Tmi64d3i-We3Av95Wz0_UWWlLtekP1zTgOOVDqAG0 26187
omicverse/pp/__init__.py sha256=NxB8p0AbJ_RPMKcmRwrd1aiaHr5F9T0LXftUfEEVHYM 600
omicverse/pp/_preprocess.py sha256=qeZXNxt3DMVQ5voiTKZZ38GBZZSvlr3aFnm8XyP_oy4 27228
omicverse/pp/_qc.py sha256=lnz9UAUvo4XSwPW3A-u5CxSeKkBiUVDT05oPPlzLbQY 17176
omicverse/single/.DS_Store sha256=I0CPlu1kXowSFsi8_ep4pMG3vIY2NPSL5nyBj3ibH_M 6148
omicverse/single/README.md sha256=XiX9jbol-6O_At0c2nfnxJgWbyZT-gcu7kVEzL_zUPg 8790
omicverse/single/_SCSA.py sha256=Nz9yoQ5prLedzSk7ZPi1Hx8jpVAPHKHsK6hJMPt7KGM 61426
omicverse/single/__init__.py sha256=OmqO3_yipDH-4fa6CtWC0BxMeqVlg7CY6T_m0Zbb4Hk 1215
omicverse/single/_anno.py sha256=d0d2JHkvilnpodAi8ryIVaW1yxYbZZX3vmqJQKjNTfo 28030
omicverse/single/_atac.py sha256=01lZnY-xEHNk6LUY_0NYJsQgU78t0NmX0sTavm_E9NQ 10196
omicverse/single/_aucell.py sha256=GFkF5QI83tPJYu8C2E11_1UVmI0I78m721PcQVyTWhY 9656
omicverse/single/_batch.py sha256=amlYhy8msCyPqcQM-OfiHoPGWfIg9hPxYYEwZ6Qa0Q0 3407
omicverse/single/_cefcon.py sha256=2KKSaO3kyjwOs6E2edZfP0yQPPCxvRvrACWkY9kcoTs 19489
omicverse/single/_cellfategenie.py sha256=q8JHDlm-RkCnp0Df_s2CT2qGmUhyVCB4rg6Psp4a3eo 32142
omicverse/single/_cosg.py sha256=mHvVMPrak2McdOIDvfcMXxb0Vop9iUlUeJ9d-Hm2l8g 21100
omicverse/single/_cpdb.py sha256=o7cHGYz0MTy1t7tJgfOAtOpoewChkPSItNH2sMenC4M 12142
omicverse/single/_ltnn.py sha256=-Dya-TCvcYGpy1eH_UlxVKsKIHNg8D-YT_59wLkw_9A 32028
omicverse/single/_mdic3.py sha256=YQxarp3lUCE5NHuFeA5GoaYRWn2oes0q_JGWN3-UtRE 20556
omicverse/single/_metacell.py sha256=tT-75XmFmHmXiC4bbmVFEGJ5l4PmP0xSOWYhPZOiNtU 5551
omicverse/single/_mofa.py sha256=QcC3rUNkMc7ac_oCf7dHcTATSz3pUswc_Ud1Mx9Xkmc 38177
omicverse/single/_nocd.py sha256=1-kN83f_DxWU_yuA1eIDFGYhUwsdG4AX_VEhVcDkhW8 11678
omicverse/single/_scannorl.py sha256=O272Y4h-J2W-hfKoYp4vD_K4chlMbzLLLPFXktO201o 4589
omicverse/single/_scdrug.py sha256=uuBCJ68R3TuqOb_aCg_XRJigrWwgCajzAeYA-opxPbo 18135
omicverse/single/_scgsea.py sha256=9uRm6zV1P9jPJfX3R-uuAcN6qBpVVVU_7VpDHhfAPUU 13608
omicverse/single/_seacells.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
omicverse/single/_simba.py sha256=y4cU61sSA5T9dTkyIVmyq3ruy7Mqw0-w3-Ixo7wikL0 7303
omicverse/single/_tosica.py sha256=0m6pVyIUBDS918AZNaQJ5ZUntJLcib9pwHommYOO9II 18296
omicverse/single/_traj.py sha256=QmfR6JCnqFcL8gpAkSmFfMT5B8WNKbDM-WQDqAmEs6Y 4218
omicverse/single/_via.py sha256=YxQbJI8gjKU9MQFH506lNHRAO7xlCrX04AnYpsKY6O4 76688
omicverse/space/__init__.py sha256=-09_s3fsmcJKFhBBg_dqC38ymZGTQl9K1V-xHq-t9I4 149
omicverse/space/_cluster.py sha256=I_dm0xOuhoNHE5USFhiaCcEZDXr28xV3MJSDzJC79Pw 4913
omicverse/space/_integrate.py sha256=0qIixsTQ09F8xM-VxD7GFJa2-PztgarHAgr7IrMClvc 12205
omicverse/space/_spaceflow.py sha256=rS86Yq8ejfwVkPllArQcz_iO4zodGQi8cjbLLav0iSQ 7451
omicverse/space/_tangram.py sha256=SJzi7-YRnaeZ3u9vY5ajyeSrklEnkZrQBA_NIwmmfaY 3292
omicverse/spaceflow/_SpaceFlow.py sha256=IkOFw4_BtfHOlAuktP7ywHjIjS3lqFVh42vrkGu9Q90 27318
omicverse/spaceflow/__init__.py sha256=Uo4HJa3tD7AJ_t7zbz3gFFGjR-YudEc1hpoYMxyH7qE 54
omicverse/spaceflow/_util.py sha256=Gla9c8BaBvfaNpIV2LK-VU2oU_lnj0dNmeS8rYsMOF0 361
omicverse/tape/__init__.py sha256=onidoQ7Xe0KMHGS84Y9iO7UV-EzoeXm8Z8ktIBYJdk0 108
omicverse/tape/deconvolution.py sha256=avZ951ZCDKsCqkH_QJTYxO4WoFO-xU1WKxwvf8O_0Qo 7521
omicverse/tape/model.py sha256=WyvzKdmzBghBhEgOFF41BBj8a1Zfh0J8YD_6WJPs3tg 7953
omicverse/tape/simulation.py sha256=rxiTNyKMGsy3Gqxw4n9OHLyJfXzgVkupY6wPJf51mFQ 6097
omicverse/tape/train.py sha256=Ow6EVWZifWMJ_nqnxaJm_U5bsqmEy1JJeqyISlycds4 6726
omicverse/tape/utils.py sha256=KYLnIoOc-98a6nKes-HN8WSE-9chAhJxa8uCws4Au18 6585
omicverse/tosica/TOSICA_model.py sha256=H_6tdOeQE3nrf3H13DRfg_VICav5cjNg7FQBMa3PPrA 11399
omicverse/tosica/__init__.py sha256=J4VjW4efB_qQC9OhQ7z7xyaoQBPSftu83S5L6Qjt7J0 184
omicverse/tosica/customized_linear.py sha256=5RqJSDoZ4xhzmzFvyIXgelKTOus8mRFz12N29wvGpkU 5669
omicverse/tosica/pre.py sha256=20X4uC5sopAn7BKFhzyCpMvy3b3QqGZUDQFyEj7R1wE 11304
omicverse/tosica/train.py sha256=XA2v-08Q06zD-7JCusyUeX5lxWa4PSEIZsD80ESb8HU 13384
omicverse/utils/__init__.py sha256=2Fxv7unXhFllY_lW8muSRfvk8TRxia9wkL6glCrVziQ 1111
omicverse/utils/_cluster.py sha256=S0o7tM5YTZWtsU6HSSKc5a-xQcRH-Jd55qs7b7jEWWM 6217
omicverse/utils/_data.py sha256=PmC80ewf7jNIyE1gKdvdiooyoes6kd1cfHwYsWnPdT0 21401
omicverse/utils/_enum.py sha256=WhGJjcR4T-dxJ1m7Bu_UXOJpI3vfg4W4BcREpOwjpT0 2343
omicverse/utils/_genomics.py sha256=QcQSqBpBamMmPtd42nhKtmrhjMM9Z65HNU4mhq6hy8Q 20217
omicverse/utils/_heatmap.py sha256=3cgXTfVMnsy25bZJodHH7WChw8NTPUKx1F2SXOkGYs4 20837
omicverse/utils/_knn.py sha256=iVqQOCN8u7UrL7qx15iI53Ltuj02R5ueXdv6ecM9mvg 5370
omicverse/utils/_mde.py sha256=yJ3dh6hmHEKC9jifqOvLxSjhjx3_k1MKYq7UvRxSETI 2520
omicverse/utils/_paga.py sha256=_c1zEcqAdprZ3zEUNtVNjEcEnf0mhwOJjhf93YtB6Ms 16487
omicverse/utils/_plot.py sha256=2AHHTuRlVYc5RzlQrDQ522Lmhp-wSKALG87C40nzfIY 38859
omicverse/utils/_roe.py sha256=CXjVJjbAgGbXHibMde48b6iLKGO2tGXiinawrOI-3Gw 5008
omicverse/utils/_scatterplot.py sha256=j2Lzc0_SwJuHpZlmnGJxUF81rIcrwWP4LBTDI4KoCYw 48995
omicverse/utils/_syn.py sha256=mHAaGISWRFU2hiaY9Dc0TznXnux4_mM1AquhbzXA3TE 4169
omicverse/utils/_venn.py sha256=tzpJSvM4l0PF7mxB5WH64mixtedI8PJYaIBQe_XWBAw 5765
omicverse/via/__init__.py sha256=C2K7dL4ai2LnNkpNrijzJtqZ8aWLOpGlY_XAy9PrTpk 143
omicverse/via/core.py sha256=E6mm59wnBbS8errllMI_SrjMkxyTsf5dHfGFzXOnzo8 195095
omicverse/via/datasets_via.py sha256=yuVOw_sb1miKxPY6m1vg0b8WvW9CgIpcl2poG43NRSc 10436
omicverse/via/examples.py sha256=cz9L_b5d9xeFVy4r2BvdDVnRw0Lsp7TUgChEb5f95Vw 160696
omicverse/via/plotting_via.py sha256=8oeYixIx0zVdsHvwPycxiLD_H5-_Px0qPxGxMqmlXE0 145530
omicverse/via/utils_via.py sha256=H8_5Ev_cCRTks0pnm9CFesEoMDX-y4RprnddS7Pjofk 75612
omicverse/via/windmap.py sha256=09izB4hH-hsThKx9udlKlvBxAhmvhbeFXl45sy-ghtQ 7987
omicverse/via/.idea/VIA.iml sha256=w0TW3o9qEaYr1iYR1jwYqlUBYm3KyxgnCK1PD03XvwQ 441
omicverse-1.5.8.dist-info/LICENSE sha256=IwGE9guuL-ryRPEKi6wFPI_zOhg7zDZbTYuHbSt_SAk 35823
omicverse-1.5.8.dist-info/WHEEL sha256=EZbGkh7Ie4PoZfRQ8I0ZuP9VklN_TvcZ6DSE5Uar4z4 81
omicverse-1.5.8.dist-info/METADATA sha256=fHduAnG7Ti74t4sGpigJNT_DQMavHzK3Yt7eSKKaTZA 11314
omicverse-1.5.8.dist-info/RECORD