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pedl

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1.0.2 pedl-1.0.2-py3-none-any.whl

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Project: pedl
Version: 1.0.2
Filename: pedl-1.0.2-py3-none-any.whl
Download: [link]
Size: 4066838
MD5: e13af763c89a8bdcef8e81f8b0ff7f91
SHA256: 6cd956ca7f01d6bd751dbeb5262cc163da8492d8eba63cf62809ce8665bcf60f
Uploaded: 2023-08-29 07:02:21 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: pedl
Version: 1.0.2
Summary: Search the biomedical literature for protein interactions andprotein associations.
Author: Leon Weber
Author-Email: leonweber[at]posteo.de
Home-Page: https://github.com/leonweber/pedl
License: MIT
Requires-Dist: requests
Requires-Dist: numpy
Requires-Dist: tqdm
Requires-Dist: torch (>=1.8)
Requires-Dist: transformers (>=4.6)
Requires-Dist: lxml (>=4.4.1)
Requires-Dist: bioc
Requires-Dist: segtok
Requires-Dist: diskcache
Requires-Dist: openpyxl
Requires-Dist: pandas
Requires-Dist: entrezpy
Requires-Dist: hydra-core
Requires-Dist: elasticsearch
Requires-Dist: pytorch-lightning
Requires-Dist: biopython
Description-Content-Type: text/markdown
[Description omitted; length: 6526 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.38.4)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
pedl/__init__.py sha256=Y3LSfRioSl2xch70pq_ULlvyECXyEtN3krVaWeGyaxk 22
pedl/bert_for_distant_supervision.py sha256=ZYQObohDqDdpBri7hyXxLXwdV2wVRWgZvaCWFKqZyXw 4898
pedl/build_training_set.py sha256=Ei-QOyk8amn414DeedLhtrYI0gATnM7VSFeMZg62LGU 4242
pedl/data_getter.py sha256=o219VD5gqdyvtW-9SoK9cQEeeTmW_qD5e0KsCbO4U4E 19626
pedl/database.py sha256=-ZX0JzLuEQ0UQ0lR7C1zblXvVppMewYlUCmu2gJHznM 1634
pedl/predict.py sha256=4eEyD_d0pDy14NmS7dtDFCPBPgmp6_C0ZmAuqIjUaww 8165
pedl/pubtator_elasticsearch.py sha256=DMway-wnC7OunZg3Alg9FsIyP-7DF-shlR1nftgY6B0 9522
pedl/rebuild_pubtator_index.py sha256=XpYC3gN7z0FTzuoC2EtHGtaXyk1UXUjV6TCRkoM2LW0 958
pedl/summarize.py sha256=CwYMLCz9qmGrfpvleqeENY3jhxdfVBHf33xbPNFs87E 13517
pedl/utils.py sha256=2wBcjRh6xcTRICq0G6lLTc22rnu-UgPrTuFiRfgS0JA 18200
pedl/configs/__init__.py sha256=JqmBIiZnO_c1ce6zv6JZzf01tRk6jFq-SGGuvkL_r1U 21
pedl/configs/build_training_set.yaml sha256=jWnzJP2UNsyIXTXLpdmFTcliH7LbF218WW4LCPY4_uM 501
pedl/configs/predict.yaml sha256=U8S-_gNGHOYrqLxCEbTUA0Hlgpta8NjIIzNi2-_r-bc 934
pedl/configs/pubtator_elaticsearch.yaml sha256=wLFC977lZksdlgwbOe8R_sS88-IBA5XmfJ3tH5l5oP8 116
pedl/configs/rebuild_pubtator_index.yaml sha256=IpwK7zVTVdJUBTfMfC2hg8HoxRv0plD6-l298eNIa04 503
pedl/configs/summarize.yaml sha256=6jjm_tYmDbGxUPVt-grrIqFZrsYyIqm0uKsio1PPkvY 903
pedl/configs/database/__init__.py sha256=JqmBIiZnO_c1ce6zv6JZzf01tRk6jFq-SGGuvkL_r1U 21
pedl/configs/database/default.yaml sha256=Rbi2Z25hvVue490DPpEajwGCKBmXzkThup5FxV20kbs 452
pedl/configs/elastic/default.yaml sha256=G5G-jkRMjDa_ptnceVLGqvYVNoh9-q7wpzNCsbMiPas 83
pedl/configs/entities/__init__.py sha256=JqmBIiZnO_c1ce6zv6JZzf01tRk6jFq-SGGuvkL_r1U 21
pedl/configs/entities/default.yaml sha256=Qw8DjnYNjdOjigq9TRdBgiUCQdNWolc0QoZPHECvQ4E 96
pedl/configs/hydra/__init__.py sha256=JqmBIiZnO_c1ce6zv6JZzf01tRk6jFq-SGGuvkL_r1U 21
pedl/configs/hydra/help/__init__.py sha256=JqmBIiZnO_c1ce6zv6JZzf01tRk6jFq-SGGuvkL_r1U 21
pedl/configs/hydra/help/build_training_set_help.yaml sha256=QPDbvVVWlyMHayUW9QYM9wBPVY8WzSATsGJgUcfgfzg 967
pedl/configs/hydra/help/excel_summarize_help.yaml sha256=WkCkMjWZePK_kujdTEA7qHeVgNrA5xFBaIvOM3Ri7oY 1109
pedl/configs/hydra/help/predict_help.yaml sha256=CuJY3KWVlVdO0fqcLTQi9p2KAskZLnj9pMXqFA-vEDs 1549
pedl/configs/hydra/help/pubtator_elasticsearch_help.yaml sha256=74V76zPzrEqyTNzAu71S_7SO1wZKrqQHrZ5d9cFm9IQ 745
pedl/configs/hydra/help/rebuild_pubtator_index_help.yaml sha256=_kw7qcq1nWsU5I8XFnuVVg9g5IWrLb_lhZxyZ-HAIXg 823
pedl/configs/type/__init__.py sha256=JqmBIiZnO_c1ce6zv6JZzf01tRk6jFq-SGGuvkL_r1U 21
pedl/configs/type/drug_protein.yaml sha256=V9X9TKWi05gcH327RHx7jdeZ_Hoa2CuUD11G7ie8Pgo 542
pedl/configs/type/protein_protein.yaml sha256=tXfoSo4jpkL3Fh0yRiFXLYuSf-gRNllmtu_n3okgo8s 462
pedl/data/HOM_AllOrganism.rpt sha256=cyUsvdaL9EPQxC5wikVrzBYyqt-iSHAi3O9zthKD8KQ 18171360
pedl/data/geneid_to_name.json sha256=0x3GJaMN6vurY6-a0CyEBP-ldrHzZyByOAyRjDOTckE 5179646
pedl/data/uniprot2geneid.json sha256=7EXbpW-59oHU1u1M2wG5vBnQhvzAM1kCT6ruy2JVZ1o 716415
pedl/datasets/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
pedl/datasets/pedl_dataset.py sha256=buk-tkENy4syOl5rDw7keFlLsa2yWy6oCQXdv4UuImI 5884
pedl-1.0.2.dist-info/METADATA sha256=swzD-lWorRwzKoDDGu5f8YVK-9fywQaxBF21vf35SmE 7228
pedl-1.0.2.dist-info/WHEEL sha256=2wepM1nk4DS4eFpYrW1TTqPcoGNfHhhO_i5m4cOimbo 92
pedl-1.0.2.dist-info/entry_points.txt sha256=CRzzpm-TRV7kjfBx6GPdoukMWlrJJGP2Gqk_MfvrvBA 246
pedl-1.0.2.dist-info/top_level.txt sha256=LSZduV3Kh2MS1Is-78bvk1KHz0gzD7LSXLKcxVQoPkM 5
pedl-1.0.2.dist-info/RECORD — —

top_level.txt

pedl

entry_points.txt

[console_scripts]
pedl-build_training_set = pedl.build_training_set:build_training_set
pedl-extract = pedl.predict:predict
pedl-rebuild_pubtator_index = pedl.rebuild_pubtator_index:rebuild_pubtator_index
pedl-summarize = pedl.summarize:summarize