Wheelodex » Projects » scArchest

scArchest

View on PyPI — Reverse Dependencies (0)

0.0.1 scArchest-0.0.1-py3-none-any.whl

Wheel Details

Project: scArchest
Version: 0.0.1
Filename: scArchest-0.0.1-py3-none-any.whl
Download: [link]
Size: 166051
MD5: 8c612b121069bd6df7058c00ba33c767
SHA256: 5e89f8fb3997dda227ab110eb4d46701ab67a9620291186b82342ee5b0845fd0
Uploaded: 2020-09-21 05:18:26 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt

METADATA

Metadata-Version: 2.1
Name: scArchest
Version: 0.0.1
Summary: Transfer learning with Architecture Surgery on Single-cell data
Author: Marco Wagenstetter, Mohsen Naghipourfar, Mohammad Lotfollahi
Author-Email: cottoneyejoe.server[at]gmail.com, naghipourfar[at]ce.sharif.edu, mohammad.lotfollahi[at]helmholtz-muenchen.de
Home-Page: https://github.com/theislab/scarchesp
License: MIT
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Environment :: Console
Classifier: Framework :: Jupyter
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX :: Linux
Requires-Dist: scanpy (~=1.6.0)
Requires-Dist: torch (~=1.6.0)
Requires-Dist: numpy (~=1.19.2)
Requires-Dist: scipy (~=1.5.2)
Requires-Dist: scikit-learn (~=0.23.2)
Requires-Dist: matplotlib (~=3.3.1)
Requires-Dist: anndata (~=0.7.4)
Requires-Dist: pandas (~=1.1.2)
Requires-Dist: h5py (~=2.10.0)
Requires-Dist: tqdm (~=4.49.0)
Requires-Dist: scvi-tools
Requires-Dist: sfaira
Description-Content-Type: text/markdown
[Description omitted; length: 2701 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.35.1)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
scarches/__init__.py sha256=HKfK3SfDCsld6_cAx4DuJjhyxQAGSYBNW2KG7wUnF18 112
scarches/dataset/__init__.py sha256=vatIzfOQN3l6irKXZDL1x8RtoZfhYop0WPMV3kJA9ME 193
scarches/dataset/mars/__init__.py sha256=mgXrQHeRTKoh1Ivy6AV53GI57qlkAe-xdD6B1mudDnc 46
scarches/dataset/mars/meta_anndata.py sha256=pRFdf0q0ZeoJBbIuiE74ZLG4QnHNKSgNX-C8ohhgYts 2189
scarches/dataset/scvi/__init__.py sha256=zs-nzBdlNSrbqe_9I_n_UlZIqTBu2N6h9UVRT5sUuSs 221
scarches/dataset/scvi/annotation_data_loader.py sha256=aSbimZK7PUQz3JfBu9Skk9p-61hH45DOFtrK-vlu_Dg 4781
scarches/dataset/scvi/scvi_data_loader.py sha256=GPpA1YI__vCPZclo1bwpPJ9P1t_u3X3_IvE8LgO8heY 10245
scarches/dataset/scvi/total_data_loader.py sha256=QyzGRX7JxGzElsQHnuNQOghrEgWtOXF4F-y4wAiQq0I 9396
scarches/dataset/trvae/__init__.py sha256=GzbcuV3wjs9wy2OOde1zzXnxBPmiby0nwV-iDDidw5k 131
scarches/dataset/trvae/_utils.py sha256=dIP6fnphUD94VzEBWc2V_ybnI86X_RmeFKmePBCk_j0 1156
scarches/dataset/trvae/anndata.py sha256=vVpqYdjzzjNf5yw0ulOVzodJ8d87keQT9AIohydJTrk 3968
scarches/dataset/trvae/data_handling.py sha256=cU3pkoBlUttLTprwGAomUntMCu2Btiiqw7Nh5zCYpSY 5226
scarches/metrics/__init__.py sha256=P8Y7cCaDQL-C_OBU6K7SnZW86w4Ii17bUoY89qohgJo 68
scarches/metrics/metrics.py sha256=zwY6fosI3Hv-LmFJ1-W0GbVyGmV-7H7zYJeV9yfzhEM 5435
scarches/models/__init__.py sha256=XzCt5X56FRJIXk7rScisKslWcnBH6-TBzXq6I0N3qE8 99
scarches/models/mars/__init__.py sha256=fX9NTLsKWoOZQLx__Gc-IQz0oZzpKFISKUSHgpSzI0c 22
scarches/models/mars/activations.py sha256=52XjAWeTqrJdq6MLmocGqZe-mGoVJhLhDoyAEUNY0tk 241
scarches/models/mars/losses.py sha256=ckw9GscB2rJHguovFfLRJ-2BWFhSr4b2LeXmw6Ya5WE 977
scarches/models/mars/mars.py sha256=yYd2f43vxDIs5Te16D9Xi0f8d-ScZFESmldXnaet6Mc 4781
scarches/models/scvi/__init__.py sha256=xd4zRJphq24L0MExALca35jy60z4sS1jckylHw6wHjk 188
scarches/models/scvi/classifier.py sha256=3-SMt9O-1izI-7ndk6ECopJvnV0hKoYJMUezPqRenF8 1231
scarches/models/scvi/scanvi.py sha256=TR8YcSFkiMbSLjevCnZ74e5TKSCisOKFMGnUHHjWCPk 8193
scarches/models/scvi/scvi.py sha256=yxN5TnWFoaoT5Bpq2yGe3mW9bpKkUc7QTRZd9rFQBmo 14143
scarches/models/scvi/totalvi.py sha256=h7JXMuXAXenh57GB7Uu_ROcbhi5Een_JMNlPfxQ-z9g 18270
scarches/models/scvi/_base/__init__.py sha256=JTZz8_SgUuubnfYynuQ0RPnIqasOxjt7yqnB-ZvwmVc 26422
scarches/models/trvae/__init__.py sha256=vOiOX1X-zmwjk2BaaJUyMquxaHnlq6vEZB8DQMq0z0U 25
scarches/models/trvae/_utils.py sha256=q5AE5DtegBtfdbbcpNkhG9dZGB_qE1JgeDjJjwnXems 563
scarches/models/trvae/activations.py sha256=52XjAWeTqrJdq6MLmocGqZe-mGoVJhLhDoyAEUNY0tk 241
scarches/models/trvae/losses.py sha256=lx4dFQsf4h8fmQN5AacdiTtt1P--kSzaPQL6gQST8fc 8045
scarches/models/trvae/modules.py sha256=TBW7-68srZUZlHLMfBtg7U1thr8HmEJobplRYI1t-Lw 9322
scarches/models/trvae/trvae.py sha256=RY1cnTYKEECW0mEHbmBiEQq-G7jUG3tS-sjTB9L6Tv4 8872
scarches/plotting/__init__.py sha256=jrSG6iBOBT7VWi4UyZ8hT8b6KqQ6jdIyTOdUdaWw8U0 68
scarches/plotting/_alluvial.py sha256=_Iq4e1iVF44B3JNCBJpJS8ZnSThjFGsZhZ4GMsK0JbI 10918
scarches/plotting/sankey.py sha256=Lbibj9FHB_GEtqyOz9Vp3VEuykVxW4EtQJvm7YxaCsU 1938
scarches/plotting/scvi_eval.py sha256=hbAqnzsZyxuEzcWqfBa8G94qXxJCwouJE2LRDyxHx_Y 6718
scarches/surgery/__init__.py sha256=12K3YWBZym5sOm8uIhcBurcg19WLBwr8lnTCWiCD-xE 95
scarches/surgery/mars.py sha256=RHtewZaEMdRuD1zGDtKtVmhPHoOlit0NJSbQuMKG7Zg 4005
scarches/surgery/scvi.py sha256=3PgoyjJYKfI6-CnoSOKu8lzKBRTuy_xIzPS-I2sZDvQ 9909
scarches/surgery/trvae.py sha256=TJ7pDhTzcWd0ZLEyaQRxPDi0EMfFI6Tf_1-ZXns1YW4 3741
scarches/trainers/__init__.py sha256=g66sbRkckDHdObQw7oI11Lp0YOxtEtN_Y7HZJ9X6E8o 337
scarches/trainers/mars/__init__.py sha256=1vtME3LU3aiozNYb1J-FmmycabCZiBD_dVYZxGb3Nhw 83
scarches/trainers/mars/_utils.py sha256=JLijBxtXNkZOI_U2h5vye7bV3PWuGq4Gqy5zoi057lo 3190
scarches/trainers/mars/mars_meta_trainer.py sha256=u18YLulrt1tYuK882KmT7mtpCQqTzKy6uu8QZysawgE 13633
scarches/trainers/mars/meta.py sha256=-ZP4UctypxPWyhmILc0ZOH_2xgH5P7c5stPWcnBN2mI 4293
scarches/trainers/mars/unsupervised.py sha256=7ypT-EJOnvxjDbO-W4X7i21supb-TKGuUevM5wrm5-s 5381
scarches/trainers/scvi/__init__.py sha256=rMB1h3in4Ei3NFCrTuM6zF5TmRd0alx_kqoQH4PR7_A 319
scarches/trainers/scvi/annotation.py sha256=VZEM6ijssEXKYSOZyZ-xLujNBtQkmQ4MXQDUe4gkVoo 9121
scarches/trainers/scvi/inference.py sha256=GK9VY9R0v_sfTkEEkyf4kbZ62BtSwvYwm3WeyZ0qLfg 7865
scarches/trainers/scvi/total_inference.py sha256=qvkYo9cf0T5CQzHaaTpGm1KDL0eEey8ZWql4Yw12e14 8866
scarches/trainers/scvi/trainer.py sha256=cBnIQ5M2cXS-k_lglOSw6lJozh8h4JB580LZwAQI1yQ 19167
scarches/trainers/trvae/__init__.py sha256=ud2n_2DvIlZDOSdwJ_uCZLMbinXZLUeU9FhIHUBp3Xo 38
scarches/trainers/trvae/_utils.py sha256=a56SYXK6NWJzEqpg-mghxFYtyRqnpf8vRlrQHLx6mcA 7460
scarches/trainers/trvae/trainer.py sha256=hn7YB1Vyw0S8c1lJYQrK8i17eRCB5_J24PLs-dtU4yY 11515
scarches/trainers/trvae/unsupervised.py sha256=4jbItkXrmQgqCCuFVFpbo2tvV1b_pUp9t1TR3ENamxk 1607
scarches/utils/__init__.py sha256=S2UQdbB9Irti6434tIxb5V6OZkFi2bpotzg6XdVir6c 18
scarches/utils/monitor.py sha256=xM1zASDJsHImDAqD7IKk_ltDKXnrPY3rXtiktrFy46U 2576
scarches/utils/scvi/__init__.py sha256=qVmSOxXZmpjbI6j97pb1R91kpU27x3_fle_c6z8Idxs 35
scarches/utils/scvi/_constants.py sha256=m8YUwLQvak3xlWrAdnKxdC7jYny961RHEYFI198sZaY 209
scarches/utils/scvi/_settings.py sha256=z9AeCCWM47FDmHASyfAPkkPoZoKbHPtoEPxcgjB4zsQ 2459
scarchest/__init__.py sha256=E8x5N1jHOLQHH-teWKUzqI0aIi3eaXSLqJm6t15nshM 368
scarchest/dataset/__init__.py sha256=vatIzfOQN3l6irKXZDL1x8RtoZfhYop0WPMV3kJA9ME 193
scarchest/dataset/mars/__init__.py sha256=mgXrQHeRTKoh1Ivy6AV53GI57qlkAe-xdD6B1mudDnc 46
scarchest/dataset/mars/meta_anndata.py sha256=pRFdf0q0ZeoJBbIuiE74ZLG4QnHNKSgNX-C8ohhgYts 2189
scarchest/dataset/scvi/__init__.py sha256=zs-nzBdlNSrbqe_9I_n_UlZIqTBu2N6h9UVRT5sUuSs 221
scarchest/dataset/scvi/annotation_data_loader.py sha256=aSbimZK7PUQz3JfBu9Skk9p-61hH45DOFtrK-vlu_Dg 4781
scarchest/dataset/scvi/scvi_data_loader.py sha256=GPpA1YI__vCPZclo1bwpPJ9P1t_u3X3_IvE8LgO8heY 10245
scarchest/dataset/scvi/total_data_loader.py sha256=QyzGRX7JxGzElsQHnuNQOghrEgWtOXF4F-y4wAiQq0I 9396
scarchest/dataset/trvae/__init__.py sha256=GzbcuV3wjs9wy2OOde1zzXnxBPmiby0nwV-iDDidw5k 131
scarchest/dataset/trvae/_utils.py sha256=dIP6fnphUD94VzEBWc2V_ybnI86X_RmeFKmePBCk_j0 1156
scarchest/dataset/trvae/anndata.py sha256=vVpqYdjzzjNf5yw0ulOVzodJ8d87keQT9AIohydJTrk 3968
scarchest/dataset/trvae/data_handling.py sha256=cU3pkoBlUttLTprwGAomUntMCu2Btiiqw7Nh5zCYpSY 5226
scarchest/metrics/__init__.py sha256=P8Y7cCaDQL-C_OBU6K7SnZW86w4Ii17bUoY89qohgJo 68
scarchest/metrics/metrics.py sha256=zwY6fosI3Hv-LmFJ1-W0GbVyGmV-7H7zYJeV9yfzhEM 5435
scarchest/models/__init__.py sha256=XzCt5X56FRJIXk7rScisKslWcnBH6-TBzXq6I0N3qE8 99
scarchest/models/mars/__init__.py sha256=fX9NTLsKWoOZQLx__Gc-IQz0oZzpKFISKUSHgpSzI0c 22
scarchest/models/mars/activations.py sha256=52XjAWeTqrJdq6MLmocGqZe-mGoVJhLhDoyAEUNY0tk 241
scarchest/models/mars/losses.py sha256=ckw9GscB2rJHguovFfLRJ-2BWFhSr4b2LeXmw6Ya5WE 977
scarchest/models/mars/mars.py sha256=yYd2f43vxDIs5Te16D9Xi0f8d-ScZFESmldXnaet6Mc 4781
scarchest/models/scvi/__init__.py sha256=xd4zRJphq24L0MExALca35jy60z4sS1jckylHw6wHjk 188
scarchest/models/scvi/classifier.py sha256=3-SMt9O-1izI-7ndk6ECopJvnV0hKoYJMUezPqRenF8 1231
scarchest/models/scvi/scanvi.py sha256=TR8YcSFkiMbSLjevCnZ74e5TKSCisOKFMGnUHHjWCPk 8193
scarchest/models/scvi/scvi.py sha256=yxN5TnWFoaoT5Bpq2yGe3mW9bpKkUc7QTRZd9rFQBmo 14143
scarchest/models/scvi/totalvi.py sha256=h7JXMuXAXenh57GB7Uu_ROcbhi5Een_JMNlPfxQ-z9g 18270
scarchest/models/scvi/_base/__init__.py sha256=JTZz8_SgUuubnfYynuQ0RPnIqasOxjt7yqnB-ZvwmVc 26422
scarchest/models/trvae/__init__.py sha256=vOiOX1X-zmwjk2BaaJUyMquxaHnlq6vEZB8DQMq0z0U 25
scarchest/models/trvae/_utils.py sha256=q5AE5DtegBtfdbbcpNkhG9dZGB_qE1JgeDjJjwnXems 563
scarchest/models/trvae/activations.py sha256=52XjAWeTqrJdq6MLmocGqZe-mGoVJhLhDoyAEUNY0tk 241
scarchest/models/trvae/losses.py sha256=lx4dFQsf4h8fmQN5AacdiTtt1P--kSzaPQL6gQST8fc 8045
scarchest/models/trvae/modules.py sha256=TBW7-68srZUZlHLMfBtg7U1thr8HmEJobplRYI1t-Lw 9322
scarchest/models/trvae/trvae.py sha256=RY1cnTYKEECW0mEHbmBiEQq-G7jUG3tS-sjTB9L6Tv4 8872
scarchest/plotting/__init__.py sha256=jrSG6iBOBT7VWi4UyZ8hT8b6KqQ6jdIyTOdUdaWw8U0 68
scarchest/plotting/_alluvial.py sha256=_Iq4e1iVF44B3JNCBJpJS8ZnSThjFGsZhZ4GMsK0JbI 10918
scarchest/plotting/sankey.py sha256=Lbibj9FHB_GEtqyOz9Vp3VEuykVxW4EtQJvm7YxaCsU 1938
scarchest/plotting/scvi_eval.py sha256=hbAqnzsZyxuEzcWqfBa8G94qXxJCwouJE2LRDyxHx_Y 6718
scarchest/surgery/__init__.py sha256=12K3YWBZym5sOm8uIhcBurcg19WLBwr8lnTCWiCD-xE 95
scarchest/surgery/mars.py sha256=RHtewZaEMdRuD1zGDtKtVmhPHoOlit0NJSbQuMKG7Zg 4005
scarchest/surgery/scvi.py sha256=3PgoyjJYKfI6-CnoSOKu8lzKBRTuy_xIzPS-I2sZDvQ 9909
scarchest/surgery/trvae.py sha256=TJ7pDhTzcWd0ZLEyaQRxPDi0EMfFI6Tf_1-ZXns1YW4 3741
scarchest/trainers/__init__.py sha256=g66sbRkckDHdObQw7oI11Lp0YOxtEtN_Y7HZJ9X6E8o 337
scarchest/trainers/mars/__init__.py sha256=1vtME3LU3aiozNYb1J-FmmycabCZiBD_dVYZxGb3Nhw 83
scarchest/trainers/mars/_utils.py sha256=JLijBxtXNkZOI_U2h5vye7bV3PWuGq4Gqy5zoi057lo 3190
scarchest/trainers/mars/mars_meta_trainer.py sha256=u18YLulrt1tYuK882KmT7mtpCQqTzKy6uu8QZysawgE 13633
scarchest/trainers/mars/meta.py sha256=-ZP4UctypxPWyhmILc0ZOH_2xgH5P7c5stPWcnBN2mI 4293
scarchest/trainers/mars/unsupervised.py sha256=7ypT-EJOnvxjDbO-W4X7i21supb-TKGuUevM5wrm5-s 5381
scarchest/trainers/scvi/__init__.py sha256=rMB1h3in4Ei3NFCrTuM6zF5TmRd0alx_kqoQH4PR7_A 319
scarchest/trainers/scvi/annotation.py sha256=VZEM6ijssEXKYSOZyZ-xLujNBtQkmQ4MXQDUe4gkVoo 9121
scarchest/trainers/scvi/inference.py sha256=GK9VY9R0v_sfTkEEkyf4kbZ62BtSwvYwm3WeyZ0qLfg 7865
scarchest/trainers/scvi/total_inference.py sha256=qvkYo9cf0T5CQzHaaTpGm1KDL0eEey8ZWql4Yw12e14 8866
scarchest/trainers/scvi/trainer.py sha256=cBnIQ5M2cXS-k_lglOSw6lJozh8h4JB580LZwAQI1yQ 19167
scarchest/trainers/trvae/__init__.py sha256=ud2n_2DvIlZDOSdwJ_uCZLMbinXZLUeU9FhIHUBp3Xo 38
scarchest/trainers/trvae/_utils.py sha256=a56SYXK6NWJzEqpg-mghxFYtyRqnpf8vRlrQHLx6mcA 7460
scarchest/trainers/trvae/trainer.py sha256=hn7YB1Vyw0S8c1lJYQrK8i17eRCB5_J24PLs-dtU4yY 11515
scarchest/trainers/trvae/unsupervised.py sha256=4jbItkXrmQgqCCuFVFpbo2tvV1b_pUp9t1TR3ENamxk 1607
scarchest/utils/__init__.py sha256=S2UQdbB9Irti6434tIxb5V6OZkFi2bpotzg6XdVir6c 18
scarchest/utils/monitor.py sha256=xM1zASDJsHImDAqD7IKk_ltDKXnrPY3rXtiktrFy46U 2576
scarchest/utils/scvi/__init__.py sha256=qVmSOxXZmpjbI6j97pb1R91kpU27x3_fle_c6z8Idxs 35
scarchest/utils/scvi/_constants.py sha256=m8YUwLQvak3xlWrAdnKxdC7jYny961RHEYFI198sZaY 209
scarchest/utils/scvi/_settings.py sha256=z9AeCCWM47FDmHASyfAPkkPoZoKbHPtoEPxcgjB4zsQ 2459
tests/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/mars/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/mars/mars.py sha256=Uua7YNX6vtg5scPwpTaS0loq9Ycg5uZeTn0SC-tQl1s 1848
scArchest-0.0.1.dist-info/METADATA sha256=5zpG7XWWn3ouWx2Zi3Wo9KGXB8nw-KAvO8o_tb-pVsY 4010
scArchest-0.0.1.dist-info/WHEEL sha256=EVRjI69F5qVjm_YgqcTXPnTAv3BfSUr0WVAHuSP3Xoo 92
scArchest-0.0.1.dist-info/top_level.txt sha256=mBJvuWNghsA50oV8yOB5PRpWS-JsNK4Dyzx-nhVHRes 16
scArchest-0.0.1.dist-info/RECORD — —

top_level.txt

scarchest
tests