Path |
Digest |
Size |
scirpy/__init__.py |
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206 |
scirpy/datasets/__init__.py |
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13303 |
scirpy/datasets/_processing_scripts/.gitignore |
sha256=tJU9BUGoJ9keaQPQ0cjD8G2Bz6xTjg4YFnq6feKToeU
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scirpy/datasets/_processing_scripts/3k_barcodes.csv |
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77249 |
scirpy/datasets/_processing_scripts/README.md |
sha256=7Snd4vvvCVJEdDxuXC6rhNYXuA-xlMFYqW2Gn2jQusg
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scirpy/datasets/_processing_scripts/jupytext.toml |
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129 |
scirpy/datasets/_processing_scripts/maynard2020.py |
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6523 |
scirpy/datasets/_processing_scripts/wu2020.py |
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3461 |
scirpy/datasets/_processing_scripts/wu2020_3k.py |
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scirpy/get/__init__.py |
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scirpy/io/__init__.py |
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scirpy/io/_convert_anndata.py |
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scirpy/io/_datastructures.py |
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scirpy/io/_io.py |
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26880 |
scirpy/io/_legacy.py |
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scirpy/io/_util.py |
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scirpy/io/_tracerlib/__init__.py |
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scirpy/io/_tracerlib/core.py |
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16978 |
scirpy/ir_dist/__init__.py |
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12096 |
scirpy/ir_dist/_clonotype_neighbors.py |
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15075 |
scirpy/ir_dist/_util.py |
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scirpy/ir_dist/metrics.py |
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26481 |
scirpy/pl/__init__.py |
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477 |
scirpy/pl/_clonal_expansion.py |
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3274 |
scirpy/pl/_clonotype_imbalance.py |
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5817 |
scirpy/pl/_clonotype_modularity.py |
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scirpy/pl/_clonotypes.py |
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24110 |
scirpy/pl/_diversity.py |
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2116 |
scirpy/pl/_group_abundance.py |
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3585 |
scirpy/pl/_repertoire_overlap.py |
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6683 |
scirpy/pl/_spectratype.py |
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3506 |
scirpy/pl/_vdj_usage.py |
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12296 |
scirpy/pl/base.py |
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14557 |
scirpy/pl/styling.py |
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scirpy/pp/__init__.py |
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scirpy/pp/_index_chains.py |
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8313 |
scirpy/pp/_merge_adata.py |
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3407 |
scirpy/tests/__init__.py |
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scirpy/tests/conftest.py |
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21109 |
scirpy/tests/test_clonotypes.py |
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10415 |
scirpy/tests/test_datasets.py |
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scirpy/tests/test_get.py |
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981 |
scirpy/tests/test_io.py |
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32534 |
scirpy/tests/test_ir_dist.py |
sha256=FTUZVRaTCXwhlvp6C0rkkgPdK-NLBJAD_czjOhf8_0c
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18482 |
scirpy/tests/test_ir_dist_metrics.py |
sha256=KTN_H8AxovqI3aENqtvP7bkZ21OmxARakpuqUo8a4TU
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10765 |
scirpy/tests/test_ir_dist_util.py |
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12290 |
scirpy/tests/test_ir_query.py |
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6530 |
scirpy/tests/test_plotting.py |
sha256=ZoxMFVCtff4q8O_utPAKjW1GG77QJ1vsbxVyrsyHUTk
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5186 |
scirpy/tests/test_plotting_base.py |
sha256=stto9R_pei_XScx5BZywvfxHRITfeuFGvxI0jiItcWU
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2206 |
scirpy/tests/test_preprocessing.py |
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9026 |
scirpy/tests/test_tools.py |
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23941 |
scirpy/tests/test_util.py |
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13747 |
scirpy/tests/test_workflow.py |
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scirpy/tests/util.py |
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5436 |
scirpy/tests/data/wu2020_200_v0_11.h5ad |
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4603503 |
scirpy/tests/data/wu2020_200_v0_6.h5ad |
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705118 |
scirpy/tests/data/10x/10k_BMMNC_5pv2_nextgem_Multiplex_vdj_t_all_contig_annotations_small.csv |
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scirpy/tests/data/10x/10k_BMMNC_5pv2_nextgem_Multiplex_vdj_t_all_contig_annotations_small.json |
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26270 |
scirpy/tests/data/10x/all_contig_annotations.json |
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41193 |
scirpy/tests/data/10x/filtered_contig_annotations.csv |
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scirpy/tests/data/10x/sc5p_v2_hs_melanoma_10k_b_filtered_contig_annotations.csv.gz |
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541501 |
scirpy/tests/data/10x/vdj_nextgem_hs_pbmc3_t_filtered_contig_annotations.csv.gz |
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142732 |
scirpy/tests/data/airr/rearrangement_ig.tsv |
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scirpy/tests/data/airr/rearrangement_tra.tsv |
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scirpy/tests/data/airr/rearrangement_trb.tsv |
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scirpy/tests/data/airr/tra_issue_280.tsv |
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scirpy/tests/data/bd/RhapVDJDemo_BCR_Dominant_Contigs.csv.gz |
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scirpy/tests/data/bd/RhapVDJDemo_BCR_Unfiltered_Contigs.csv.gz |
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scirpy/tests/data/bd/test_per_cell_chain.csv |
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scirpy/tests/data/bd/test_unfiltered_contigs.csv |
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scirpy/tests/data/bracer/changeodb.tab |
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scirpy/tests/data/test_workflow/adata_10x_pbmc3_t.obs.expected.pkl.gz |
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scirpy/tests/data/test_workflow/adata_wu_200_old_schema.obs.expected.pkl.gz |
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scirpy/tests/data/tracer/SRR10782570/filtered_TCR_seqs/SRR10782570.pkl |
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scirpy/tests/data/tracer/cell1/filtered_TCR_seqs/cell1.pkl |
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scirpy/tests/data/tracer/cell2/filtered_TCR_seqs/cell2.pkl |
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scirpy/tl/__init__.py |
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scirpy/tl/_chain_qc.py |
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scirpy/tl/_clonal_expansion.py |
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scirpy/tl/_clonotype_imbalance.py |
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scirpy/tl/_clonotype_modularity.py |
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scirpy/tl/_clonotypes.py |
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scirpy/tl/_convergence.py |
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scirpy/tl/_diversity.py |
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scirpy/tl/_group_abundance.py |
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scirpy/tl/_ir_query.py |
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scirpy/tl/_repertoire_overlap.py |
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scirpy/tl/_spectratype.py |
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scirpy/util/__init__.py |
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scirpy/util/_negative_binomial.py |
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scirpy/util/graph/__init__.py |
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scirpy/util/graph/_component_layout.py |
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scirpy/util/graph/_fr_size_aware_layout.py |
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scirpy-0.16.1.dist-info/METADATA |
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scirpy-0.16.1.dist-info/WHEEL |
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scirpy-0.16.1.dist-info/licenses/LICENSE |
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scirpy-0.16.1.dist-info/RECORD |
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