Reverse Dependencies of scprep

The following projects have a declared dependency on scprep:

• akey — akey
• capital — Single-Cell Analysis, comparing pseudotime trajectories with tree alignment
• cytopy — Data centric algorithm agnostic cytometry analysis framework
• degex — Detect Gene Expression in Single-CEll data
• feature-clock — Feature Clock, provides visualizations that eliminate the need for multiple plots to inspect the influence of original variables in the latent space. Feature Clock enhances the explainability and compactness of visualizations of embedded data.
• GMMchi-scs-pipeline — Pre-print version of the GMMchi-based single cell postprocessing pipeline
• heatgeo — Heat geodesic embeddings
• litds — litds
• m-phate — m-phate
• magic-impute — MAGIC
• meld — MELD
• neuroboom — A suite of python tools for visualisation and analysis of Connectomic data
• phate — PHATE
• pipseq — In Vitro Fertilization
• sc-catnip — sc-catnip - single-cell chromatin accessibility analysis tools in python
• sc-tools — sc-tools - Analysis Tools for Single-Cell Data
• sc-utils — sc-utils: utility functions for single-cell analysis.
• spider-st — Identifying spatially variable interactions
• spiderYa — Identifying spatially variable interactions
• torchcfm — Conditional Flow Matching for Fast Continuous Normalizing Flow Training.
• TPHATE — Temporal PHATE (TPHATE) is a python package for learning robust manifold representations of timeseries data with high temporal autocorrelation.
• vintools — vintools - Michael Vinyard's utilities.
• xsc — xsc