seqnado

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0.5.1 seqnado-0.5.1-py3-none-any.whl

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Project: seqnado
Version: 0.5.1
Filename: seqnado-0.5.1-py3-none-any.whl
Download: [link]
Size: 69395
MD5: e73b173824d49fd63db8c1f084de38e9
SHA256: 24f3e6d14fd552e7fb255c1267ab245802e303d2edc1f2af243026bdcf0a7f51
Uploaded: 2024-04-23 14:25:01 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: seqnado
Version: 0.5.1
Summary: Pipelines for genomics analysis
Author-Email: Alastair Smith <alastair.smith[at]ndcls.ox.ac.uk>, Catherine Chahrour <catherine.chahrour[at]msdtc.ox.ac.uk>
Project-Url: Homepage, https://github.com/alsmith151/seqnado
License: GNU GENERAL PUBLIC LICENSE Version 3
Requires-Python: >=3.10
Requires-Dist: click
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Requires-Dist: pandas
Requires-Dist: pandera
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Requires-Dist: pyyaml
Requires-Dist: seaborn
Requires-Dist: setuptools-scm
Requires-Dist: snakemake-wrapper-utils
Requires-Dist: snakemake (<9,>8)
Requires-Dist: snakemake-executor-plugin-slurm
Requires-Dist: tracknado
Requires-Dist: wget
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 316 characters]

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top_level.txt

seqnado

entry_points.txt

seqnado = seqnado.cli:cli_pipeline
seqnado-config = seqnado.cli:cli_config
seqnado-design = seqnado.cli:cli_design