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1.2.8 str_analysis-1.2.8-py3-none-any.whl

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Project: str-analysis
Version: 1.2.8
Filename: str_analysis-1.2.8-py3-none-any.whl
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Size: 593750
MD5: 3339f58b03e954cca3395beaf8f871ea
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Uploaded: 2024-02-09 15:25:58 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: str-analysis
Version: 1.2.8
Summary: Utilities for analyzing short tandem repeats (STRs)
Home-Page: https://github.com/broadinstitute/str-analysis
License: MIT
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: Implementation :: CPython
Classifier: Programming Language :: Python :: Implementation :: PyPy
Requires-Python: >=3.7
Requires-Dist: google-cloud-storage (>=2.14.0)
Requires-Dist: hail (>=0.2.127)
Requires-Dist: ijson (>=3.2.2)
Requires-Dist: intervaltree (>=3.1.0)
Requires-Dist: lxml (>=4.9.3)
Requires-Dist: numpy (>=1.20.3)
Requires-Dist: pandas (>=1.1.4)
Requires-Dist: pyfaidx (>=0.6.4)
Requires-Dist: pybedtools (>=0.9.0)
Requires-Dist: pyBigWig (>=0.3.22)
Requires-Dist: pysam (>=0.16.0.1)
Requires-Dist: requests (>=2.25.1)
Requires-Dist: simplejson (>=3.19.2)
Requires-Dist: tqdm (>=4.62.3)
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 5049 characters]

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Wheel-Version: 1.0
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Tag: py3-none-any

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str_analysis-1.2.8.dist-info/RECORD — —

top_level.txt

str_analysis

entry_points.txt

[console_scripts]
add_adjacent_loci_to_expansion_hunter_catalog = str_analysis.add_adjacent_loci_to_expansion_hunter_catalog:main
annotate_EHdn_locus_outliers = str_analysis.annotate_EHdn_locus_outliers:main
annotate_and_filter_str_catalog = str_analysis.annotate_and_filter_str_catalog:main
call_non_ref_motifs = str_analysis.call_non_ref_motifs:main
check_trios_for_mendelian_violations = str_analysis.check_trios_for_mendelian_violations:main
combine_json_to_tsv = str_analysis.combine_json_to_tsv:main
combine_str_catalogs = str_analysis.combine_str_catalogs:main
combine_str_json_to_tsv = str_analysis.combine_str_json_to_tsv:main
convert_annotated_EHdn_locus_outliers_to_expansion_hunter_catalog = str_analysis.convert_annotated_EHdn_locus_outliers_to_expansion_hunter_catalog:main
copy_EH_vcf_fields_to_json = str_analysis.copy_EH_vcf_fields_to_json:main
filter_vcf_to_STR_variants = str_analysis.filter_vcf_to_STR_variants:main
make_bamlet = str_analysis.make_bamlet:main
make_cramlet_from_cram_in_google_storage = str_analysis.make_cramlet_from_cram_in_google_storage:main
print_reads = str_analysis.print_reads:main
run_reviewer = str_analysis.run_reviewer:main
simulate_str_expansions = str_analysis.simulate_str_expansions:main