Path |
Digest |
Size |
torchcell/__init__.py |
sha256=vxN8H-kZQtY4RlCMpX8_QzqndIetgr8PRBav56eyGrE
|
61 |
torchcell/__version__.py |
sha256=uQplwApC1VpQ7xy6k7wWwXSuTxD6RkJAYKS_tVrspwA
|
239 |
torchcell/cell.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
torchcell/data_download_yeastmine.py |
sha256=hFhYuZly0XYI150BLQPQ5pn6eAKs_qFxm1XuHX86cGU
|
1637 |
torchcell/dataloading_lmdb.py |
sha256=uyMU42K1DxG0LLSdIWuDQZ5WwvDBqHhxsCCk5RazFrI
|
2055 |
torchcell/delete_subset.py |
sha256=vbgQGEY4N_ZXgbcS2f3BEOoumyWs3LmVZ11nlz2FDAo
|
1335 |
torchcell/mypy_check.py |
sha256=yB4DuB-qpS3RinD1vsl5O4ZHtizhreqEcxWE-8EG0uA
|
117 |
torchcell/ncbi.py |
sha256=UY-ZZ2esNE4YMbrdSMAF-LokmOOASgNBdYkbRqVCIbc
|
3844 |
torchcell/neo4j_example.py |
sha256=2M4SS5RT9sk-I3MfxHR9BGam8GB3-rmRiV6DxpgjCZs
|
6801 |
torchcell/neo4j_fitness_lmdb.py |
sha256=nUBUoDTBzeOq5Dm08zjqNlWyyW1NAwKsZ2yRvl6-vNw
|
1273 |
torchcell/neo4j_fitness_query.py |
sha256=FOFnPj2-tPESRaA73uFADzuO8AQ-gWtzXSqOohuZKZA
|
2630 |
torchcell/prof.py |
sha256=udYEWrv5d8FvBndykkEVgCVOvuSxaejbzI7871grrLg
|
1675 |
torchcell/py.typed |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
torchcell/sc_graph.py |
sha256=LBM-D1i83J5RWzPIu9PHcgRrAC8LtjMOg5U4bVVHYBw
|
11083 |
torchcell/torchcell.mplstyle |
sha256=NvEjO9VvgmFATkrxCgJRupzXfhirXXqQ32uCiyDfShg
|
1071 |
torchcell/adapters/__init__.py |
sha256=3oX_WeLOWbgPb6VUbDpM8yrmp3j-iaVT6nEyUfb8BoU
|
568 |
torchcell/adapters/cell_adapter.py |
sha256=A8PVURomoDbbVoUroArVD6p5b5GiAnVpScBkRp5QEYw
|
25096 |
torchcell/adapters/costanzo2016_adapter.py |
sha256=NNRsQe-ZmEsY-BExrpfcgwxiZr7PCUFjrp4eqU7ZZN4
|
34751 |
torchcell/adapters/costanzo2016_async_adapter.py |
sha256=2HWneVQeloyG55cTve7UMbfZrnxP0QMCnbLbGlzi74w
|
62366 |
torchcell/adapters/kuzmin2018_adapter.py |
sha256=-085MekJkcDPhS_UlQ_ZlMD2IVqZ7S3RRlGwEQXCElI
|
4814 |
torchcell/cell/__init__.py |
sha256=uqdD5cU2hRCxb_RgED_zJpYIAqpPZTGjHQezgPWPvpA
|
29 |
torchcell/data/__init__.py |
sha256=5sAAH1EkTI_5i4PW1X_6dwa2L5ThVRAUl09MYYbsfaE
|
260 |
torchcell/data/data.py |
sha256=Xs832_cNphdQjRN1E9PuHBA9YCL6AMA1n6_sKAYCNZg
|
2089 |
torchcell/database/__init__.py |
sha256=368OZ_47158qQIiKBosbFThyELoxmzLMJdkXybqtP3A
|
67 |
torchcell/database/build_command.py |
sha256=M0eH2XfVjLC73vJnkI_nr3lJcp5bEXsqHdD1I6B0T1I
|
1541 |
torchcell/database/tcdb.py |
sha256=LpM7vua5z1DnR8jSEx3K7bx5Kp38SBkEL-gHuq1i5P0
|
606 |
torchcell/datamodels/__init__.py |
sha256=AQvntbA2hg6wkNv6EVU594wkz7u6cDMVVNRyuwFl4Y8
|
1520 |
torchcell/datamodels/pydant.py |
sha256=qI78hDu-ZGFfbmDkau4DEV8l92Tlrti9TVFm2Nq1zC4
|
477 |
torchcell/datamodels/schema.py |
sha256=3-6c4hDR7T9VRS3TQlbX9B3NGcG8cA9yfkb6grwJzqc
|
9051 |
torchcell/datamodules/__init__.py |
sha256=bzpdmjZPBQ25BXUM2TNDz1l4PxZHtxb36GpopbfJLQk
|
63 |
torchcell/datamodules/cell.py |
sha256=Pw0elFN8lCjoleV1Yadi0HrfzwhqwYnM4GyE-o4p0rY
|
2326 |
torchcell/datamodules/dcell.py |
sha256=NsPf_RIz5heaaL-53UaKjsz5yvnRGzComRPOVPSm4LA
|
2331 |
torchcell/dataset/__init__.py |
sha256=SuyPFl9sP0lPmRgrSFBwQOPuHTpZlhFIiRVoeNFxf3g
|
339 |
torchcell/dataset/cell_dataset.py |
sha256=QM8PlK21yL5-3DCtSqMWjrVR5Zbf9EJpw6X9h9S8Ak8
|
1293 |
torchcell/dataset/dataset.py |
sha256=QlKxPzZcRE7hti4kY95WhFiiiAeoiX5ZhYvjdx18mKI
|
15640 |
torchcell/dataset/experiment_dataset.py |
sha256=xa4lbAWJFovkSYyjQ-prnEdlDdDpD4tCAN29rL9D3Ho
|
8208 |
torchcell/dataset_preprocess/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
torchcell/dataset_readers/__init__.py |
sha256=FLnRToujwMxjMyOO5RtJtTnyDyii9ovy1vwN52dj7XU
|
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torchcell/dataset_readers/reader.py |
sha256=hnC7iyKyjpp0fV3F2gVnIqurwWdJBIoUrl_WuxshBlE
|
3249 |
torchcell/datasets/__init__.py |
sha256=bDrmJD0evMSTY7IEAYZGALEOsH3zD5vDfnyAreWSHws
|
997 |
torchcell/datasets/add_datasets_check.py |
sha256=smGuqlFMYRI9ICbSD9_fqKw8AmRO2FkhX2M_FqDqO1Q
|
1804 |
torchcell/datasets/base_cell.py |
sha256=VrvyoXDqFNrIdvNDhe27ZVyHTlkLwjbfdl-ATotX_Ts
|
11258 |
torchcell/datasets/cell.py |
sha256=_6rbYpm9BbrZl5jrYxVnobW0FuOlrIjYiSLEFNKR8Cc
|
21299 |
torchcell/datasets/cell_scratch.py |
sha256=MYS0YCG5p587HChnoMp2hl9ygtRaYlCHbWynA_k4a3M
|
3167 |
torchcell/datasets/codon_frequency.py |
sha256=OJFuZqoZUPz_ziw6BZTL9_OZkZnvKVilpE6ZEPQimns
|
2878 |
torchcell/datasets/dcell.py |
sha256=FKv1GTw_ZjrzK7o-s5Nh5efsEYZGPu_IdYHgeGm6LQo
|
18269 |
torchcell/datasets/dummy.py |
sha256=yAs0XVo6k9Tu1yGGB1Nm_nhhWLu4-0FVwRqUmpjEps0
|
190 |
torchcell/datasets/embedding.py |
sha256=h5bL4On4HkYe2WSdIvWsn2AhMKy8QA4SaK7JvuvKsd8
|
6880 |
torchcell/datasets/experiment.py |
sha256=g-Zrn8Nsg0svrbWHjX-G-oRwYVJ6yZGdYP64oyNisy0
|
11768 |
torchcell/datasets/fungal_up_down_transformer.py |
sha256=W8rBuaZEoSI_XPoeDwQH1Vc9Nv4vMtrSzbHts3S1Qzc
|
4875 |
torchcell/datasets/genome.py |
sha256=ysyd9RTPOb_NKSFNmO8T64kAdgbbohIDpC4_HPa8KSM
|
469 |
torchcell/datasets/go.py |
sha256=ztlQOx1daYjpSzX-KLOR92KWHsRr4ldvcneSg5rMk2o
|
4817 |
torchcell/datasets/nucleotide_transformer.py |
sha256=I8PuITtrnlaXZA1RD-b8JJIHVl82IkiqRSGE5GfEADo
|
4809 |
torchcell/datasets/one_hot_gene.py |
sha256=nHaDVSARtBdx6angtIdOLHCk8hd_wdDxWMp7kkpR4Ds
|
3298 |
torchcell/datasets/ontology.py |
sha256=py6r8o44UPhtodYXT5L4auOd_TXbb1fr-CCrjOBs2Gw
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4370 |
torchcell/datasets/pronto_ontology.py |
sha256=OaA1stfNKcPXK1gw7xbGHueeozu6m467ZTHfRj7WayI
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3187 |
torchcell/datasets/protT5.py |
sha256=v5vI23N9EcXzUcXKzH-qyIiZXzBCn1ElWxDi-oreHac
|
4447 |
torchcell/datasets/scerevisiae/__init__.py |
sha256=8CsLizpt56fUM_WqVKEkHfWo1MXwAaM0BPKdREbDSUU
|
700 |
torchcell/datasets/scerevisiae/baryshnikovna2010.py |
sha256=MgS9QE_DMtweU0TqiRBZTT3Kj8t30n0unQo9OyzAX2U
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2960 |
torchcell/datasets/scerevisiae/costanzo2016.py |
sha256=1D50UvVl3DlsYHEBkVN3oqzK74hPQyq3lKqWjVmN9wA
|
23832 |
torchcell/datasets/scerevisiae/costanzo2016_deprecated.py |
sha256=LHazcrw8NH3f4Ty8x4a2QS3eiiDzIbot5Cbmla82QEQ
|
29994 |
torchcell/datasets/scerevisiae/fitness_yeast9.py |
sha256=-S38GplnXzU1tNy0mLleducXR00OCotAZOoRlcDlgXo
|
275 |
torchcell/datasets/scerevisiae/kuzmin2018.py |
sha256=VeuwYCCypshY98AmSTv8Kbh1os-2eXHf_-JKq8AMJPY
|
27175 |
torchcell/datasets/scerevisiae/tutorial_joining_nucleotide_embeddings.py |
sha256=8nIyE6BXyHU_eSpsdytk7Tit3a4lFqW7821NGNgiZgA
|
1535 |
torchcell/go/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
torchcell/go/check_deprecated.py |
sha256=Utj4Os-1hRr5GHdCxBJWnlYdKtqV-5vfJWx_0ystnoQ
|
488 |
torchcell/graph/__init__.py |
sha256=3yX9RRNbrcysqiIP__3Lu2z7Pw4ZibTsMuUhaHoE21o
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319 |
torchcell/graph/graph.py |
sha256=5Dte3o4rTF_V9d-jjieOFcIIup1cISy5mkYpelysQAY
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39560 |
torchcell/graph/metabolism.py |
sha256=_9RoAqsKsn0CMMsb4LbVmn9IYZcjUoIO6auAcR8cKRY
|
1710 |
torchcell/graph/sgd.py |
sha256=CuVQVNtSIhc0u5xLmtFdMilG9m2HZDzVWDlEyRv0FeQ
|
13162 |
torchcell/graph/uniprot_api_ec.py |
sha256=-l9kTbeOrdzqmQFIuysMd8SWzXFExhZJrkeQsWVpnNc
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1322 |
torchcell/graph/validation/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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torchcell/graph/validation/raw_structure.py |
sha256=lwkwvBp_WBbz77y_nPa3wMmr9hpsLLahhHwmIjZqjzQ
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6522 |
torchcell/graph/validation/locus_related/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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torchcell/graph/validation/locus_related/locus.py |
sha256=qz-aNbazxP0K6nsaCcXKxnqaTlttho0bh1qC9it59RM
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6865 |
torchcell/knowledge_graphs/__init__.py |
sha256=FaBm7iHwh-wP21QM7ZuYp1hOaBsbD8aYWt4rM5vl3vs
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torchcell/knowledge_graphs/create_pypy_scerevisiae_kg.py |
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|
1815 |
torchcell/knowledge_graphs/create_scerevisiae_kg.py |
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3121 |
torchcell/knowledge_graphs/create_scerevisiae_kg_small.py |
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torchcell/loader/__init__.py |
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torchcell/loader/cpu_experiment_loader.py |
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2821 |
torchcell/losses/__init__.py |
sha256=aR_JurFkev5ZvREqKINWNPRhGJ9yoJlXL6fSu3Zng3U
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torchcell/losses/dcell.py |
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884 |
torchcell/losses/weighted_mse.py |
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torchcell/models/__init__.py |
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torchcell/models/act.py |
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torchcell/models/constants.py |
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torchcell/models/dcell.py |
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12209 |
torchcell/models/deep_set.py |
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4079 |
torchcell/models/deep_set_transformer.py |
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torchcell/models/esm2.py |
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torchcell/models/fungal_up_down_transformer.py |
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torchcell/models/graph_attention.py |
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torchcell/models/graph_convolution.py |
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torchcell/models/linear.py |
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torchcell/models/llm.py |
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torchcell/models/mlp.py |
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torchcell/models/nucleotide_transformer.py |
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torchcell/models/protT5.py |
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torchcell/models/species_aware_lm.py |
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7506 |
torchcell/ncbi/__init__.py |
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torchcell/ncbi/ncbi.py |
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torchcell/ncbi/sequence.py |
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torchcell/ncbi/sequence_scratch.py |
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torchcell/ontology/__init__.py |
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torchcell/ontology/tc_ontology.py |
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torchcell/pypy_adapters/__init__.py |
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torchcell/pypy_adapters/costanzo2016_pypy_adapter.py |
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57609 |
torchcell/pypy_adapters/kuzmin2018_pypy_adapter.py |
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torchcell/scratch/delete.py |
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torchcell/scratch/delete_0.py |
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torchcell/scratch/delete_00.py |
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torchcell/scratch/delete_1.py |
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torchcell/sequence/__init__.py |
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torchcell/sequence/data.py |
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torchcell/sequence/data_scratch.py |
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torchcell/sequence/sequence_plot.py |
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torchcell/sequence/sequence_scratch.py |
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torchcell/sequence/genome/__init__.py |
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torchcell/sequence/genome/scerevisiae/__init__.py |
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torchcell/sequence/genome/scerevisiae/s288c.py |
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torchcell/sequence/genome/scerevisiae/s288c_gb.py |
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torchcell/sequence/genome/scerevisiae/s288c_ncbi.py |
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torchcell/trainers/__init__.py |
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torchcell/trainers/cell.py |
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torchcell/trainers/dcell_regression.py |
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torchcell/trainers/dcell_regression_slim.py |
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torchcell/trainers/graph_convolution_regression.py |
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torchcell/trainers/regression.py |
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torchcell/trainers/regression_deep_set_transformer.py |
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torchcell/trainers/simple_linear_regression.py |
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torchcell/trainers/utils.py |
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torchcell/viz/__init__.py |
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torchcell/viz/fitness.py |
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torchcell/viz/genetic_interaction_score.py |
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4083 |
torchcell/yeastmine/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
torchcell/yeastmine/graphs.py |
sha256=OIIkllAEm_afUQ2QxG0bYmdCWDwlmYlOkvp8ToNKeV0
|
36737 |
torchcell/yeastmine/yeastmine.py |
sha256=UUWh0seY4WPzxLReXyQBBap1hTTi46qrcBOSk1boZoc
|
28441 |
torchcell-0.2.0.dist-info/METADATA |
sha256=XrVmS-TJWLoCgGmEIoBL1xzXbDqVz-2hv37xQFKdqTc
|
2715 |
torchcell-0.2.0.dist-info/WHEEL |
sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM
|
92 |
torchcell-0.2.0.dist-info/entry_points.txt |
sha256=hHCg5jcuvOAeVSaX3BUvytQpFT0H4WMteAoBXubRCKk
|
90 |
torchcell-0.2.0.dist-info/top_level.txt |
sha256=_Xuh33SPCXO1vSfW77uLpZQSBRC5qTUYP0QIac1uFvY
|
10 |
torchcell-0.2.0.dist-info/RECORD |
— |
— |