triplix

View on PyPIReverse Dependencies (0)

0.0.5 triplix-0.0.5-py3-none-any.whl

Wheel Details

Project: triplix
Version: 0.0.5
Filename: triplix-0.0.5-py3-none-any.whl
Download: [link]
Size: 73545
MD5: 870045d17206e752e86e53aa2bde2e24
SHA256: 23c7f503d86e0c352630d6a4639a4c532281e104b36151ecaf6d42ca820a1ead
Uploaded: 2023-11-07 08:59:33 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: triplix
Version: 0.0.5
Summary: A python package to efficiently process, store and retrieve spatial genomics multi-contact data
Author-Email: Amin Allahyar <amin.allahyar[at]gmail.com>
Project-Url: Homepage, https://github.com/deLaatLab/triplix
License: MIT License Copyright (c) 2022 Amin Allahyar Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Keywords: Bioinformatics,Genome,3D Genome Conformation,Multi-contact
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.9
Requires-Dist: numpy (>=1.22.2)
Requires-Dist: pandas (>=1.5.1)
Requires-Dist: matplotlib (>=3.5.1)
Requires-Dist: pysam (>=0.21.0)
Requires-Dist: h5py (>=3.7.0)
Requires-Dist: joblib (>=1.1.0)
Requires-Dist: scipy (>=1.7.3)
Requires-Dist: scikit-learn (>=1.1.2)
Requires-Dist: pypairix (>=0.3.7)
Requires-Dist: igraph (>=0.9.10)
Requires-Dist: fasteners (>=0.18)
Requires-Dist: tomli; python_version < "3.11"
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 20946 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.41.3)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
triplix/__init__.py sha256=GfmFFxRmS-HpcZ8fPPTKcFZCEZ8Is83Po6MgWcYxqSU 361
triplix/__main__.py sha256=QTvG21fr5npST9l3hbmYbdPMZ_HQ-nGZsn5pGyrPf9k 1045
triplix/_logging.py sha256=rJ8x-mwqNUdehrsY9jV98sUAl0i6cY2zYzHdNYsAXNg 827
triplix/config.toml sha256=VbhVNWOBLsmYgg1kKeSpyTzptW90EYFKD3Qb4847JbU 248
triplix/core/__init__.py sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs 1
triplix/core/bam.py sha256=bG0oCtp7cWs8QNHWJ5IAYXGsBxop345Ly-uitcz65gM 3072
triplix/core/cli.py sha256=Gq4kpamW1dCqmbTGNJX0vnT-1IjvZxtQ9Abd9Y6mKEw 31979
triplix/core/concatemers.py sha256=MyDKuIgYDFivuaJBnaIJRIQuIfmf5RWywdQXgMHRScw 11908
triplix/core/configurations.py sha256=s0POpnhwTyLU3Iv-MuWB9ksBlXu43Y9t59H0cTOGsCQ 704
triplix/core/hdf5.py sha256=DAxlsPyoQIbFncnOXsHPsHQhHSe_w0Ko-m_yKINsI_w 5646
triplix/core/header.py sha256=reLdROa91YqZKfLGqTFKoqzCO1w7OsOz7v5rG3fYWDA 21489
triplix/core/plot.py sha256=9QWPn2CVWOaWVh6i_nCiquKCCR8V8d52rWxEX4Zy9BE 40045
triplix/core/stat.py sha256=IbLLYMu4nAXM4xX9_XnQh8AlkbSzj67InYDtOa3zgWM 5172
triplix/core/tri_alignments.py sha256=WUnmW54GephkaSGyYqjwMbxiuFUxptTJ5ulSn4agf1w 14187
triplix/core/triplets.py sha256=2uqv5QabHMFqmoqybPgzgOD6_VHKCsLnFBbtuBx3EXU 35308
triplix/core/utilities.py sha256=mR45kxE7lOF3ctTygAg4xmG9-oOjWW198AHv-FWPVeg 7092
triplix/core/tri_alignment/__init__.py sha256=bwZs4Gj3wtVtV5IWAt1cXwi4QLDVfzmlfGVAcOg7jHs 64
triplix/core/tri_alignment/extract.py sha256=nIz0ACRqb95COFFs6TrWfsg22lSpr1VnZMb6WX2aTXo 6663
triplix/core/tri_alignment/index.py sha256=-XWufhMtNASQnbCujQdFLq59vu422VTXIqswIUHHGJA 1238
triplix/core/tri_alignment/merge.py sha256=b2isDjt9CQ09duJfEf5CLu-llGTC9N81La-bTmovQME 11288
triplix/core/tri_alignment/sort.py sha256=uem_dm4mIh-O4LRSx8kbeYue9RO2FgP9hJyvWKAWeUg 4395
triplix/core/triplet/__init__.py sha256=BOFKYSj7Kxpi9YxDhqJVmq9p9z30H_KHwpqacbvRAOY 71
triplix/core/triplet/bin.py sha256=XJCaI-4hIFAPUBO5jURaQP1CP3JHbj-bzHoB9jDFKUY 8632
triplix/core/triplet/enrichment.py sha256=6MHI2f6727B3IFVfOzki5n1v6SUmtZKhWRSL8qwqpxE 10894
triplix/core/triplet/kdtree.py sha256=-8f13CzgmZqE4bE7sNCs526RSHswgq47Pf75ci-yQTg 7145
triplix/core/triplet/transform.py sha256=ug0QVkq_I5qIO9TOC4AQqnzUQQ_qizE87OORc2LiNOo 13375
triplix/factor_configs/distances.toml sha256=2moWyGBdg9J6-NzPiOFO9y2a3kYeF0u6s67GpnNaDEo 154
triplix/factor_configs/pairs.toml sha256=uN5n1dNzObo1HdntPiThm55x1t4Z6MNF7SD_D4Bwk50 289
triplix/factor_configs/pairs_surround.toml sha256=DJsOm1zCkK4b_9nz_zp0THUDWqtO2Y5WAJK7iF4kEIs 340
triplix/factor_configs/singletons.toml sha256=x8A6fl99kyetWnKCTN07WNbiOf7U8bY7BKPuYwPvvPU 286
triplix-0.0.5.dist-info/LICENSE sha256=1xiwGa_yIEFyZ1RpZdu6Kvp4nzdzlUMeDi-A1fUJwGk 1070
triplix-0.0.5.dist-info/METADATA sha256=LfNAmGb0YyGCUxta712ADzPHdbnzFAWbDDqur6ilgiA 23150
triplix-0.0.5.dist-info/WHEEL sha256=Xo9-1PvkuimrydujYJAjF7pCkriuXBpUPEjma1nZyJ0 92
triplix-0.0.5.dist-info/entry_points.txt sha256=vfzo5pkBM5PVyDw_BserGAeS2VxsQWAOMt1vl7CiEDg 50
triplix-0.0.5.dist-info/top_level.txt sha256=gbt5Qhos3LqzmInJXwdxj9wqNRnBQ0tHMJT7p3KrRvg 8
triplix-0.0.5.dist-info/RECORD

top_level.txt

triplix

entry_points.txt

triplix = triplix.__main__:main