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vatools

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5.1.1 vatools-5.1.1-py3-none-any.whl

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Project: vatools
Version: 5.1.1
Filename: vatools-5.1.1-py3-none-any.whl
Download: [link]
Size: 20548
MD5: 63a0cd25a0fdc9d0c20dfa8fe78eb6d6
SHA256: 507ab96919304c0ff36e035afb0b0d83b1b60be484eb993bfc49f1412bda4358
Uploaded: 2024-02-05 15:34:46 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: vatools
Version: 5.1.1
Summary: A tool for annotating VCF files with expression and readcount data
Author: Susanna Kiwala, Chris Miller
Author-Email: help[at]vatools.org
Home-Page: https://github.com/griffithlab/vatools
License: MIT License
Keywords: cancer sequencing variant variants gene expression readcounts VAF allele frequency FPKM TPM transcript VCF
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 3.5
Classifier: License :: OSI Approved :: MIT License
Requires-Dist: vcfpy (==0.12.3)
Requires-Dist: pysam
Requires-Dist: pandas
Requires-Dist: gtfparse (==1.3.0)
Requires-Dist: testfixtures
License-File: LICENSE
[No description]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.40.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
vatools/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
vatools/ref_transcript_mismatch_reporter.py sha256=gVHRrZUb0SC1DdcVoOMmqiWrRuCviGr7B9PLS2uuxqk 10594
vatools/transform_split_values.py sha256=6UU7emdodTzKtJ4EOpuc8da8hq09qX7ZxoyqpSsj08Y 9608
vatools/vcf_expression_annotator.py sha256=h1W738GyYr_tChO4FrtIIGX_XeYleQOu2OTBYUR2Hfc 10476
vatools/vcf_genotype_annotator.py sha256=BuDivrNM5pw8glHKw5khIEf6PA7YMs_fuAwvZmG33pU 3325
vatools/vcf_info_annotator.py sha256=8Uf53KH5Ta8zE6oInooqW6Js7qj2xPDQqpEZzU5xp_4 4622
vatools/vcf_readcount_annotator.py sha256=yip0GeWjsW0-PrHybTmRMsyJykYrDx4JfTz7hjgWPs8 16280
vatools/vep_annotation_reporter.py sha256=c_3B8qC3op3MWPuCRYtLPIdWBhnwKw3GOr2xqRqC3wg 8205
vatools-5.1.1.dist-info/LICENSE sha256=bgaIvmJ7f39m9HxAVpmjRROUJ2L-1Xsui3ok00lo4OU 1073
vatools-5.1.1.dist-info/METADATA sha256=6L4ZNPDxDLIswwaz2fg7M8X9NK_2lQ2lak0oz-9JKKM 813
vatools-5.1.1.dist-info/WHEEL sha256=pkctZYzUS4AYVn6dJ-7367OJZivF2e8RA9b_ZBjif18 92
vatools-5.1.1.dist-info/entry_points.txt sha256=_boeEfjhMJpYOVL0OUiTzN2X5ZuGxSzoA6Pz2i5p3O8 465
vatools-5.1.1.dist-info/top_level.txt sha256=_ELTP9c7fUb0apWjZrXJhqy0FPlvlfoLJfccZRLqcik 8
vatools-5.1.1.dist-info/RECORD — —

top_level.txt

vatools

entry_points.txt

[console_scripts]
ref-transcript-mismatch-reporter = vatools.ref_transcript_mismatch_reporter:main
transform-split-values = vatools.transform_split_values:main
vcf-expression-annotator = vatools.vcf_expression_annotator:main
vcf-genotype-annotator = vatools.vcf_genotype_annotator:main
vcf-info-annotator = vatools.vcf_info_annotator:main
vcf-readcount-annotator = vatools.vcf_readcount_annotator:main
vep-annotation-reporter = vatools.vep_annotation_reporter:main