bohra

View on PyPIReverse Dependencies (0)

2.3.6 bohra-2.3.6-py3-none-any.whl

Wheel Details

Project: bohra
Version: 2.3.6
Filename: bohra-2.3.6-py3-none-any.whl
Download: [link]
Size: 149847
MD5: ad806c0cdfd732bafb63be76437e430e
SHA256: ed2cfe7443b5171e5a3e2d28e81c688adc270744a89529130e495a41be9bdd9e
Uploaded: 2023-11-14 09:05:23 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: bohra
Version: 2.3.6
Summary: A bioinformatics pipeline for analysing short read Illumina data microbiological public health.
Author: Kristy Horan
Author-Email: kristyhoran15[at]gmail.com
Home-Page: https://github.com/kristyhoran/bohra
Classifier: Programming Language :: Python :: 3.9
Classifier: Operating System :: OS Independent
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Requires-Python: >=3.8
Requires-Dist: pytest
Requires-Dist: altair (>=5)
Requires-Dist: jinja2
Requires-Dist: biopython (>=1.70)
Requires-Dist: pandas
Requires-Dist: numpy (==1.23.1)
Requires-Dist: psutil
Requires-Dist: sh
Requires-Dist: packaging
Requires-Dist: pytest; extra == "tests"
Requires-Dist: flake8; extra == "tests"
Provides-Extra: tests
Description-Content-Type: text/markdown
[Description omitted; length: 2353 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.36.2)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
bohra/CustomLog.py sha256=JRdS-1BWQmZqIm2fejVhCAyAh7T0Gt0Dg5RQjuLSVp4 769
bohra/SnpDetection.py sha256=6f0SvOY1xc-ztWFJK3sGd3zkxiE-yg7etSF22OXsr_c 36594
bohra/Utils.py sha256=rB7eCK8LFwu5uaVMYeueWnxqFWE5TMwtRX_USx2NNe0 8434
bohra/__init__.py sha256=8mdbRxfO1zpQ6zMuCgu4pQrnYQE1iTy9Xauf5NbfY0A 216
bohra/bohra.py sha256=cv4cfcMRz3W8o-r7tWQDJF4oxxSMm41rgsy01fo81zc 9442
bohra/bohra_install.sh sha256=V_cTMpnd9g_V4Bg2N5LF2H3hU3wS83wHMouVhz250Fw 13336
bohra/main.nf sha256=4wGSkCLa6G3paQ2QboKWS0yqp0sUzRtT-xlG_a54nZM 6511
bohra/nextflow.config sha256=xG2HUm5WIdGVFwGpEzvPkmF82zLHLzb_NCXaDVKKbLU 1984
bohra/version.py sha256=dUTy5bECiBOuC5g_LHCT_8InXn5ObYoPHxftR8dBTNg 17
bohra/modules/collation/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/collation/main.nf sha256=JfY-RWpPxoj-WU91u1Gx7T4rSwdhO_D42ybqL-Crqdc 6862
bohra/modules/collation/bin/add_header_mlst.py sha256=BeR5W6e0p-n8gnp-ZdyCXgety9-lXDIKXgY0lmXRzFU 710
bohra/modules/collation/bin/collate_asm.py sha256=Tw5yCoDt0_4DhqQGI_QbnZ-BVIW7np6GJ3z9Sg4vPAI 1492
bohra/modules/collation/bin/collate_kraken2.py sha256=Cp4nuqFDYZ0g86iEzVDH_DUubMok4viO_Rwn5PvLbK0 664
bohra/modules/collation/bin/collate_stats.py sha256=9WhegX3bLMZ7FFmDUQkXpM-e0XNEsxbifWxgzSgHXDk 1978
bohra/modules/collation/bin/collate_tables.py sha256=TSK98H7Miis-VWrmd9g9xZHt1pAG3zEwVfCbtVxRccg 362
bohra/modules/collation/bin/compile.py sha256=I3ZIOHg7kObNTqwxbNtCXX5wbjB9iPjsvaecMmE0JGo 15392
bohra/modules/collation/bin/snippy_qc.py sha256=egO1jrNv4a-v5-U2j0vGo5cIixoiqM0zPlANys9vm8A 1405
bohra/modules/collation/bin/wrangle_mobsuite.py sha256=Yn9O5ihvh3FaBIeP2H_DRCp1qs9hnoNnMF6337wGX7c 598
bohra/modules/csvtk/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/csvtk/main.nf sha256=P6F0uFI7LRkhXo6mRdrcZapSlSqCh64sFuzHnmHMGLE 1146
bohra/modules/csvtk/meta.yml sha256=kzEiK_pHYxhzcwW-ZTY_aWU4pBb2zzFa8_Q4OS2ni2s 1594
bohra/modules/ectyper/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/ectyper/main.nf sha256=JyV161PY3c6Jup0IwVxoLNAYqQgv6NJr7XsbuSCZ-jw 1352
bohra/modules/ectyper/meta.yml sha256=PwHh4bFrN7ZpUvtWyHny8ar0bonl7GJgcJsYLP3Xiqk 1644
bohra/modules/emmtyper/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/emmtyper/main.nf sha256=vXo4sDRK9QEHXXdCb5hCbXKC8B_P-tB54rHelPkQTws 1396
bohra/modules/emmtyper/meta.yml sha256=PwHh4bFrN7ZpUvtWyHny8ar0bonl7GJgcJsYLP3Xiqk 1644
bohra/modules/gubbins/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/gubbins/main.nf sha256=opWLzrQ1Qc-UFA6cd-sIWMGUFJKSdxdtzHWZNZ_8t_Y 1033
bohra/modules/gubbins/meta.yml sha256=tyAAO1UaGZoUSissaBjm_L0uw9Umt95oOVknuhWIe6w 1870
bohra/modules/iqtree/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/iqtree/main.nf sha256=Mg-iXvMSkDXKA61OSEg2qBpxcOQBIdiqB9aDd6KPqhY 1201
bohra/modules/iqtree/meta.yml sha256=kzEiK_pHYxhzcwW-ZTY_aWU4pBb2zzFa8_Q4OS2ni2s 1594
bohra/modules/kleborate/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/kleborate/main.nf sha256=wvBDhRBVFCGLhaj4_Zzy67L16RHXF8c9g7iAS6tcLdE 1425
bohra/modules/kleborate/meta.yml sha256=PwHh4bFrN7ZpUvtWyHny8ar0bonl7GJgcJsYLP3Xiqk 1644
bohra/modules/kmc/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/kmc/main.nf sha256=alUlON1zLFXOeh1jDHd12VYr4eRSw_TBmHXzcmczsYc 899
bohra/modules/kmc/meta.yml sha256=1VWFgjAtd9eSxyAw0lk0v3v5YewD_ZRkc0Uj4cT5RT4 1513
bohra/modules/kraken2/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/kraken2/main.nf sha256=NIzUPUf5ZTMpWgWuQlOnhPeHD5Rl4iEYEy09qKpFf5c 1289
bohra/modules/kraken2/meta.yml sha256=Pon24iOTIjiwjW8ux1EgUKSjXfO_QL5H_8gv7DhNSbc 1844
bohra/modules/lissero/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/lissero/main.nf sha256=SnghqM3i3bud1wlrVE7Wd4sShTUVlhPwdsme2_ZbuYM 1424
bohra/modules/lissero/meta.yml sha256=_Ftyd59qAOK2JQn9q5gZVJo29VjNcAgdxxvNurYd9Y0 1511
bohra/modules/mash/sketch/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/mash/sketch/main.nf sha256=gziOZnsxvLmv1gKoRnS6XgWsL42ova40pfG2mqZ9jn4 1068
bohra/modules/mash/sketch/meta.yml sha256=kzEiK_pHYxhzcwW-ZTY_aWU4pBb2zzFa8_Q4OS2ni2s 1594
bohra/modules/mash/triangle/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/mash/triangle/main.nf sha256=0oAouppCs4KCaSNVEYmWR4BMx4BKgKOC4nXnUfQnBYA 1075
bohra/modules/mash/triangle/meta.yml sha256=kzEiK_pHYxhzcwW-ZTY_aWU4pBb2zzFa8_Q4OS2ni2s 1594
bohra/modules/meningotype/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/meningotype/main.nf sha256=5hGxKzCfkvbhq6ZpcXVlTGx3kEXh-0B0ofwlhTmyXgw 1414
bohra/modules/meningotype/meta.yml sha256=PwHh4bFrN7ZpUvtWyHny8ar0bonl7GJgcJsYLP3Xiqk 1644
bohra/modules/mlst/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/mlst/main.nf sha256=5wkfmlr4OqwXeH3W1vQ8592mxUPSsjP-d9qQoeGLWJ4 1423
bohra/modules/mlst/meta.yml sha256=Lsdc-onQAp26da4hcL1NRE-fAFGbg_fmOSt3JmLk-3c 1535
bohra/modules/mobsuite/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/mobsuite/main.nf sha256=eV2p1W2vkiIxg_84K-58J2QUSt9TiRkTptJTBOSokqY 1361
bohra/modules/mobsuite/meta.yml sha256=tyAAO1UaGZoUSissaBjm_L0uw9Umt95oOVknuhWIe6w 1870
bohra/modules/ngmaster/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/ngmaster/main.nf sha256=CheeWY7XZ3fyJisar9Ze-fBdzvmpT2xnpCBO75o25EM 1206
bohra/modules/ngmaster/meta.yml sha256=PwHh4bFrN7ZpUvtWyHny8ar0bonl7GJgcJsYLP3Xiqk 1644
bohra/modules/panaroo/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/panaroo/main.nf sha256=kI13ALjZVPuQ0tWUOrCih-kKMMgJsAJEU-tOI6Uidso 1226
bohra/modules/panaroo/meta.yml sha256=Pon24iOTIjiwjW8ux1EgUKSjXfO_QL5H_8gv7DhNSbc 1844
bohra/modules/prokka/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/prokka/main.nf sha256=nvNNKFiyXYXBsczXuQbG7MDe3WEO1THIHKIuH8KruS4 1150
bohra/modules/prokka/meta.yml sha256=tyAAO1UaGZoUSissaBjm_L0uw9Umt95oOVknuhWIe6w 1870
bohra/modules/quicktree/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/quicktree/main.nf sha256=HSXdUVQsLQjEgO8Gq-9P85_z6awmSMuy6CS2CITnZcQ 1109
bohra/modules/quicktree/meta.yml sha256=kzEiK_pHYxhzcwW-ZTY_aWU4pBb2zzFa8_Q4OS2ni2s 1594
bohra/modules/resistome/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/resistome/main.nf sha256=7ZS_dveMYFkKoaMXb6bBBqUO4YYCn6f7ZxWwBSVtA9c 2944
bohra/modules/resistome/meta.yml sha256=F5VH-TUvSo1AT_C4NgVUrAoXiPeR5HAdPbprM4vdeh0 1834
bohra/modules/resistome/bin/combine.py sha256=OqgzH6piYafSimTP6GOMWuxl8ISjzUJgChTiecNFnQ4 1118
bohra/modules/resistome/bin/concat.py sha256=4M3hJ8dSOpEFpblYY5Offeh5jLKQlvlsAE5LeZKYXTE 656
bohra/modules/resistome/bin/meta.yaml sha256=1wCZS3jucKqsVXBQcmwMaaPIygo2cWsGXKuTXLk08d4 1789
bohra/modules/roary2svg/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/roary2svg/main.nf sha256=_ndsMIqR7gxql5030vr_icwEVg7zrjS7_zHmXdHKtnA 712
bohra/modules/roary2svg/meta.yml sha256=Pon24iOTIjiwjW8ux1EgUKSjXfO_QL5H_8gv7DhNSbc 1844
bohra/modules/roary2svg/bin/roary2svg.pl sha256=--q4oc2kzO5KihI4bIht8R7iLZD6w5kipBtRqzrrjRc 5179
bohra/modules/seqkit/fx2tab/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/seqkit/fx2tab/main.nf sha256=wf3Tzjo1kKCgjXq4BUNVAP0FaOI9ZwsdyawZuLakx3Y 1467
bohra/modules/seqkit/fx2tab/meta.yml sha256=kzEiK_pHYxhzcwW-ZTY_aWU4pBb2zzFa8_Q4OS2ni2s 1594
bohra/modules/seqkit/stats/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/seqkit/stats/main.nf sha256=hYSXZn2SgAGkAze0TxY553NQHfyL_vUPud0HraBkRdc 1576
bohra/modules/seqkit/stats/meta.yml sha256=kzEiK_pHYxhzcwW-ZTY_aWU4pBb2zzFa8_Q4OS2ni2s 1594
bohra/modules/seqtk/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/seqtk/main.nf sha256=YbVUnHBda0HP0E8p5RHkXR_xtqoOciNv4rxDeAoyB3Y 1138
bohra/modules/seqtk/meta.yml sha256=kzEiK_pHYxhzcwW-ZTY_aWU4pBb2zzFa8_Q4OS2ni2s 1594
bohra/modules/shovill/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/shovill/main.nf sha256=CbztsDH-OYKBfgzGEyuEW_Cp2y09C4ymgJLUpFOsJ00 1301
bohra/modules/shovill/meta.yml sha256=tyAAO1UaGZoUSissaBjm_L0uw9Umt95oOVknuhWIe6w 1870
bohra/modules/skesa/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/skesa/main.nf sha256=fTkBehx8vR0-tasvF3FulpTHWPCJYcInjKnQx_64YTQ 1283
bohra/modules/skesa/meta.yml sha256=tyAAO1UaGZoUSissaBjm_L0uw9Umt95oOVknuhWIe6w 1870
bohra/modules/snippy/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/snippy/main.nf sha256=eE6CDnSdYY9lNmptagL6m1KRdihbkukq4NYqpTZ68bM 1669
bohra/modules/snippy/meta.yml sha256=tyAAO1UaGZoUSissaBjm_L0uw9Umt95oOVknuhWIe6w 1870
bohra/modules/snippy_clean/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/snippy_clean/main.nf sha256=4-oNoCUqaJGo6BqQxvFoHDrIn2dSnURZNKTwJnNFcuU 950
bohra/modules/snippy_clean/meta.yml sha256=tyAAO1UaGZoUSissaBjm_L0uw9Umt95oOVknuhWIe6w 1870
bohra/modules/snippy_core/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/snippy_core/main.nf sha256=soEvTvWKNHkRHLeqc5wSZ0n5VIInRkEAA5pKvdwft5g 1356
bohra/modules/snippy_core/meta.yml sha256=tyAAO1UaGZoUSissaBjm_L0uw9Umt95oOVknuhWIe6w 1870
bohra/modules/snp_dists/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/snp_dists/main.nf sha256=-VzPmeAndmqu_bLMdJo-yNVmVJ40xeT0Af7nPse5ibk 1101
bohra/modules/snp_dists/meta.yml sha256=tyAAO1UaGZoUSissaBjm_L0uw9Umt95oOVknuhWIe6w 1870
bohra/modules/spades/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/spades/main.nf sha256=49GIyoRdRvrpHAs-Vo-wVqqNnBZy1_wIpNhTb4JqTRU 1368
bohra/modules/spades/meta.yml sha256=tyAAO1UaGZoUSissaBjm_L0uw9Umt95oOVknuhWIe6w 1870
bohra/modules/stype/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/stype/main.nf sha256=AdtmPLE4q5WJchlfeng-NYMJ4_0wkRxFs_9s_4nFJr8 1499
bohra/modules/stype/meta.yml sha256=PwHh4bFrN7ZpUvtWyHny8ar0bonl7GJgcJsYLP3Xiqk 1644
bohra/modules/utils/functions.nf sha256=GC3q-7VUQ9cCKCJlU2wLHuxIq91bFSfyjTMCxsVoYQQ 2025
bohra/modules/utils/main.nf sha256=5LIQV5Tju9ZJUElkDhBQd8tbOZyIgrsysemFs2lBghA 19977
bohra/modules/utils/meta.yml sha256=Pon24iOTIjiwjW8ux1EgUKSjXfO_QL5H_8gv7DhNSbc 1844
bohra/modules/utils/bin/extract_species.py sha256=_JqHGiDP9dIABEX8_Ic69BxZklc5gGL_90TXfQNZNEs 258
bohra/templates/cluster.tmpl sha256=52OfMgGWXpcLuRhRhmwF_Aggmj0Fydi0QqYs3_O21yQ 932
bohra/templates/config_snippy.yaml sha256=MMdkIYU35PlgFrR3M448i01mCdx92Z_fECZU6netJgU 806
bohra/templates/index.html sha256=jRz-1pqAjn5mXtPsIzBU3v7OQySg1xob6QsORM6LVG4 17087
bohra/templates/report_analysis.json sha256=Uga6_Qf95zzReC4ANNOFCetCZ8WNM3EdTVOgOwqnpqY 37528
bohra/templates/typers.json sha256=cUUJ5jHyEQr1oirPbWtGnYk6-m_javL3prZH_ZAMTGA 124
bohra/workflows/assemble.nf sha256=tSWRhYtrgmYN6Npqww1wTf1M8tqg9BIMQ6p6ck6Y-IM 1566
bohra/workflows/collation.nf sha256=xLyRJPclRk8A5C6GAxyfDVF6ugeDqjnrZLAK4YOkZBo 656
bohra/workflows/default.nf sha256=oTN-hOJBT9awz2IZIR642edBx7Lep-xErMAFj-rSpxo 4662
bohra/workflows/pangenome.nf sha256=rrOaW6nartobf88ig37mM-NfH3nlk0Zjko_769cHW2c 375
bohra/workflows/preview.nf sha256=eE-1ccx4hnC2ywc1y12JIQgQDD-YK16Tv5WMCMerFuw 542
bohra/workflows/read_assessment.nf sha256=dwMgzLL5ks0e6fao5NaANo29SKKPSoyAuBkhAxsxKiE 941
bohra/workflows/snps.nf sha256=AQ6f86J9Hm4hnQdVgeti8VWDrhH9_-Wnic7yUfMCBj8 1561
bohra/workflows/species.nf sha256=QcPKet2v7EADDSgsygEZiKl6DsF7K6RgyNhBe48kOv8 578
bohra/workflows/typing.nf sha256=Ea0CzuOsDNEzLu4MuyoDoHx6-fxYqy2RoO45LF_H6d4 4401
bohra/workflows/versions.nf sha256=Yy430wVXyF5TR0YKEtkhWPwm-xE7iMLqDhnCNiykrZc 9850
bohra-2.3.6.dist-info/LICENSE.txt sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY 35149
bohra-2.3.6.dist-info/METADATA sha256=DycjXTusmjsbYGVejgPvIS17eITxuRRBi2Sw2U81baw 3372
bohra-2.3.6.dist-info/WHEEL sha256=OqRkF0eY5GHssMorFjlbTIq072vpHpF60fIQA6lS9xA 92
bohra-2.3.6.dist-info/entry_points.txt sha256=ky0HclB5y1QXB2ceSeuG_y23roZNXEagowy2kk-vlJw 44
bohra-2.3.6.dist-info/top_level.txt sha256=8SMDzL5_sia4XcH6NaHQr_mxExkJQXzZp0hdCpgG63Y 6
bohra-2.3.6.dist-info/RECORD

top_level.txt

bohra

entry_points.txt

bohra = bohra.bohra:main