Path |
Digest |
Size |
cumulus_library/.sqlfluff |
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7061 |
cumulus_library/__init__.py |
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cumulus_library/base_table_builder.py |
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4835 |
cumulus_library/base_utils.py |
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3890 |
cumulus_library/cli.py |
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18530 |
cumulus_library/cli_parser.py |
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cumulus_library/databases.py |
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21845 |
cumulus_library/db_config.py |
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cumulus_library/enums.py |
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cumulus_library/errors.py |
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cumulus_library/module_allowlist.json |
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cumulus_library/protected_table_builder.py |
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1715 |
cumulus_library/study_parser.py |
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33198 |
cumulus_library/upload.py |
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3260 |
cumulus_library/apis/__init__.py |
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cumulus_library/apis/umls.py |
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cumulus_library/parsers/fhir_valueset.py |
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cumulus_library/schema/__init__.py |
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cumulus_library/schema/columns.py |
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cumulus_library/schema/typesystem.py |
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cumulus_library/schema/valueset.py |
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cumulus_library/statistics/counts.py |
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cumulus_library/statistics/psm.py |
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cumulus_library/statistics/psm.sql |
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cumulus_library/statistics/statistics_templates/count.sql.jinja |
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cumulus_library/statistics/statistics_templates/counts_templates.py |
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cumulus_library/statistics/statistics_templates/psm_create_covariate_table.sql.jinja |
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cumulus_library/statistics/statistics_templates/psm_distinct_ids.sql.jinja |
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cumulus_library/statistics/statistics_templates/psm_templates.py |
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cumulus_library/studies/core/builder_condition.py |
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cumulus_library/studies/core/builder_documentreference.py |
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cumulus_library/studies/core/builder_encounter.py |
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cumulus_library/studies/core/builder_medication.py |
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cumulus_library/studies/core/builder_medicationrequest.py |
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cumulus_library/studies/core/builder_observation.py |
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cumulus_library/studies/core/builder_patient.py |
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cumulus_library/studies/core/builder_prereq_tables.py |
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cumulus_library/studies/core/count_core.py |
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cumulus_library/studies/core/fhir_lookup_tables.sql |
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cumulus_library/studies/core/fhir_mapping_tables.sql |
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cumulus_library/studies/core/manifest.toml |
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cumulus_library/studies/core/observation_type.sql |
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cumulus_library/studies/core/setup.sql |
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cumulus_library/studies/core/study_period.sql |
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cumulus_library/studies/core/version.sql |
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cumulus_library/studies/core/core_templates/completion_utils.jinja |
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cumulus_library/studies/core/core_templates/condition.sql.jinja |
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2400 |
cumulus_library/studies/core/core_templates/core_templates.py |
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418 |
cumulus_library/studies/core/core_templates/core_utils.jinja |
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4999 |
cumulus_library/studies/core/core_templates/documentreference.sql.jinja |
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2829 |
cumulus_library/studies/core/core_templates/encounter.sql.jinja |
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4804 |
cumulus_library/studies/core/core_templates/incomplete_encounter.sql.jinja |
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cumulus_library/studies/core/core_templates/medication.sql.jinja |
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2918 |
cumulus_library/studies/core/core_templates/medicationrequest.sql.jinja |
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cumulus_library/studies/core/core_templates/observation.sql.jinja |
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3324 |
cumulus_library/studies/core/core_templates/observation_component_valuequantity.sql.jinja |
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cumulus_library/studies/core/core_templates/patient.sql.jinja |
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cumulus_library/studies/core/reference_sql/builder_condition.sql |
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cumulus_library/studies/core/reference_sql/builder_documentreference.sql |
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5620 |
cumulus_library/studies/core/reference_sql/builder_encounter.sql |
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22038 |
cumulus_library/studies/core/reference_sql/builder_medication.sql |
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3989 |
cumulus_library/studies/core/reference_sql/builder_medicationrequest.sql |
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cumulus_library/studies/core/reference_sql/builder_observation.sql |
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11183 |
cumulus_library/studies/core/reference_sql/builder_patient.sql |
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cumulus_library/studies/core/reference_sql/builder_prereq_tables.sql |
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cumulus_library/studies/core/reference_sql/count_core.sql |
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cumulus_library/studies/discovery/code_definitions.py |
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cumulus_library/studies/discovery/code_detection.py |
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cumulus_library/studies/discovery/manifest.toml |
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cumulus_library/studies/discovery/discovery_templates/code_system_pairs.sql.jinja |
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cumulus_library/studies/template/date_range.sql |
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cumulus_library/studies/template/manifest.toml |
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— |
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