DAJIN2

View on PyPIReverse Dependencies (0)

0.3.1 DAJIN2-0.3.1-py3-none-any.whl

Wheel Details

Project: DAJIN2
Version: 0.3.1
Filename: DAJIN2-0.3.1-py3-none-any.whl
Download: [link]
Size: 79369
MD5: dca6b85a3eb16897a65c29bc452435c6
SHA256: 4773983070462557042001b5e0dcecda0a256c8577071d1167a25fe600e6eeef
Uploaded: 2023-08-23 04:16:18 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: DAJIN2
Version: 0.3.1
Summary: One-step genotyping tools for targeted long-read sequencing
Author: Akihiro Kuno
Author-Email: akuno[at]md.tsukuba.ac.jp
Home-Page: https://github.com/akikuno/DAJIN2
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: POSIX
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Dist: numpy (>=1.20.0)
Requires-Dist: scipy (>=1.6.0)
Requires-Dist: pandas (>=1.0.0)
Requires-Dist: openpyxl (>=3.0.0)
Requires-Dist: rapidfuzz (>=3.0.0)
Requires-Dist: statsmodels (>=0.13.5)
Requires-Dist: scikit-learn (>=1.0.0)
Requires-Dist: mappy (>=2.24)
Requires-Dist: pysam (>=0.19.0)
Requires-Dist: Flask (>=2.2.0)
Requires-Dist: waitress (>=2.1.0)
Requires-Dist: Jinja2 (>=3.1.0)
Requires-Dist: plotly (>=5.0.0)
Requires-Dist: kaleido (>=0.2.0)
Requires-Dist: cstag (==0.4.1)
Requires-Dist: midsv (>=0.10.1)
Requires-Dist: wslPath (>=0.3.0)
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 6048 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.41.2)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
DAJIN2/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
DAJIN2/gui.py sha256=XCGL5DGxxv__lksh4nz-dhELxTR0L0c692WjaFBbZog 2947
DAJIN2/main.py sha256=pHm1M-7EkcLpIA3Iwn59QEJULpgsAYGvQT4Op_Ab5YM 10753
DAJIN2/template_igvjs.html sha256=GGtArzRjqAgx69cKsUSjuKehURDLJALHYcnmsCuTmUs 1901
DAJIN2/view.py sha256=QKI82AWiXllxWjH3UrcT65TJkea53mt31Riq-D0h2Os 2857
DAJIN2/core/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
DAJIN2/core/core.py sha256=kUfelY1JNkVJfMQbj5cBYbtIY2N0JHJLH5eOA0p_J10 13541
DAJIN2/core/classification/__init__.py sha256=Ha0TWbkIY-vG1mAP9iJoNi-VEewLGnY-fjlCrOtY8_Q 67
DAJIN2/core/classification/classifier.py sha256=NUTOmf7cHkowkTVOafoBrCM454pYbnMX9DERb5CqhII 1644
DAJIN2/core/clustering/__init__.py sha256=_5KUozyaEE6FtfTOwpOZzEMaKOJZv8YlRYETrhQy2pU 233
DAJIN2/core/clustering/clustering.py sha256=Yessu5yTg_P5kMQCZCnI27W18AWdJtGjVbf7tLCJld0 5559
DAJIN2/core/clustering/make_kmer.py sha256=kyIONwkIMFB8Q4fH8tdca4OA0V5msXy81IOpceMa1E8 2804
DAJIN2/core/clustering/make_score.py sha256=LjVWiyPebZdgA_3YJT59-oeCc6EBjPkaTWTs8yGysnU 4258
DAJIN2/core/clustering/merge_clusters.py sha256=Ze4nQdcPbqQ9U7RSMB3ENRMrzvR_0jrUWceht5CoayE 1566
DAJIN2/core/clustering/return_labels.py sha256=16kbt-_LNK0Yqk78pRCU3JZH_wi7nZZUkABQWbP1SMQ 7617
DAJIN2/core/consensus/__init__.py sha256=iHtDKWO4fb4f-Ypiov6GocINLsy48Q2bhCDTJvKYgiw 329
DAJIN2/core/consensus/clust_subsetter.py sha256=Fh2vWLXQ2KHKKOBVqe3mlLvskClMbt-jCJ_Q1sXESPw 312
DAJIN2/core/consensus/consensus.py sha256=dckV9bBADJxn-QfDcUBLqbcso-L0vhaHhV_dguHuxZo 5033
DAJIN2/core/consensus/name_handler.py sha256=2c0S9_aG7LLur9r8MJ6MhOitf6v8-I-MN0l_OgVUxPc 2800
DAJIN2/core/preprocess/__init__.py sha256=4od1-umDbhlQngBaKDAR8FIshD4eLrqTpe3MotFWlcA 542
DAJIN2/core/preprocess/cache_checker.py sha256=hqMk4nUe6rRnCWkcFeT85frY8QyaOgS0QHpa-ex9fe8 789
DAJIN2/core/preprocess/directories.py sha256=nyXQDjN3pXq_WVzIbTjkeLwYOKHc9Eym2qSkWg3aQo0 1152
DAJIN2/core/preprocess/extract_mutation_loci.py sha256=YPoqTuWLL8fQeEAbZIbK4ieYnD62QUgp7opfmdeYVjk 11351
DAJIN2/core/preprocess/fastx_parser.py sha256=8ZKX9Ubf-42UC9Rl-X1bcLp4FNEcTsceiVP7pfQ7u60 2057
DAJIN2/core/preprocess/generate_insertion_fasta.py sha256=NKeG2hBCKW0yUtaSjo9pCBU_zYLBeJYg6V6I5W1BEUA 14012
DAJIN2/core/preprocess/genome_fetcher.py sha256=xYNf70e6--ZRsl2p9QdGAfCmU-tTY3VKjN5DJn1GzHo 1752
DAJIN2/core/preprocess/homopolymer_handler.py sha256=CU95-GgRmgHeYxvV1OO0tE5GWpZ9F1G3rObJzXcoq_4 6313
DAJIN2/core/preprocess/knockin_handler.py sha256=KOp-JI3NBf9xy3vcfxIxEMJutk2MhT3DLL6PUlQkzhY 1647
DAJIN2/core/preprocess/mapping.py sha256=8oNSzx-Qf-PQqGsbBlm6fKaoBkOgudD6b3DDXGWUTqQ 4479
DAJIN2/core/preprocess/midsv_caller.py sha256=W5J9eR2I-cS-2EMS-9v3aX_-2QzJNahrQLgqWBpQFlQ 4974
DAJIN2/core/preprocess/tmp_extract_errors_in_knockin_loci.py.py sha256=e2lXCWtgvhNAhkCmP5s4GyUexehetrKc8CeWjbA8jSg 12144
DAJIN2/core/preprocess/tmp_extract_mutation_loci_with_indexmapping.py sha256=KebKKA3NaC07ifhGsEbNWqMzI1P5ieYZ-OmJfWAvpPc 9959
DAJIN2/core/preprocess/tmp_generate_truncated_fasta.py sha256=HHrP7JFUR-z85w0yUQJnFfrK9qIL19rdxP4GFuBv0-4 13952
DAJIN2/core/preprocess/tmp_get_index_mapping.py sha256=AR-qzhmQzMypB20p4J-zoRSheMqRS9PgsAdRx2v0L20 3861
DAJIN2/core/preprocess/tmp_replace_NtoD.py sha256=50sCRSrFeYGlip2SuTMpZMCYZ7Dx8QLhDe1qXOTK3LE 1787
DAJIN2/core/report/__init__.py sha256=A8I2bNcCBCTn8wD7NApFNuFx2BpHbheJLUmDNDzqA1k 133
DAJIN2/core/report/report_bam.py sha256=t75uCN8XLJLJYwVnUNmj0vO5IdVqL6rj5TcPoIc5oQo 5674
DAJIN2/core/report/report_files.py sha256=-sv-nqLBxxwneUoWehgDiGZqniQ8upue1CG7mzLG2d4 1773
DAJIN2/core/report/report_mutation.py sha256=Ci7h6GywKz-C9lyWz1zChKHtIJ7Fc4CQSX9QkrqLJkw 6881
DAJIN2/static/css/style.css sha256=qwrpE8PIdaGRk_0FGuW6E3yjsRFcM4nb1SWB-w-HePI 27
DAJIN2/templates/index.html sha256=JdD5CnYklQ2RxCVGlAMg_4IggmOVB157SiwmJ9zkbHU 1777
DAJIN2/utils/config.py sha256=K6Fy7ynfoB868BPzaSeo8T0UDecRUT4Tq11HwdqZaKw 120
DAJIN2/utils/cssplits_handler.py sha256=XB92fWaA0Mm4S8EoV7DShIRDryI0-vNcskCQd7fHO9M 528
DAJIN2/utils/input_validator.py sha256=m9ss11uLoqlshMI3Ph-rka3pcaXoF_4poNJwwX-iKWY 5710
DAJIN2/utils/io.py sha256=sFfMZmfAZn9f7siTjSMa0Py7rCR70SSlG5Y3MZRlX4w 3033
DAJIN2/utils/report_generator.py sha256=_bTvK3CfNIT-3G7f322H0-edUCajUtAIOBjdKaQduKE 2322
DAJIN2/utils/sam_handler.py sha256=_gwLJ7XnN1tp7Nr__4RLST8VXLzdVmRAbjydhchWkmY 7574
DAJIN2/utils/tmp_memory_manager.py sha256=b8fkexASkevvp0KMnvKZAY5WYyoj2_rA_ncT2xU4JeY 505
DAJIN2/utils/__pycache__/config.cpython-310.pyc sha256=14LXKZh-hFCTfiF0iYCUDgnxNYoOaQstK-pkWTa5bGw 269
DAJIN2/utils/__pycache__/cssplits_handler.cpython-310.pyc sha256=-wHmhNNmkHAp6SgilGLH0yFdFeBLYdraKYif4TS_q2I 623
DAJIN2/utils/__pycache__/input_validator.cpython-310.pyc sha256=zrvvY2MFRDp8WX6kkAj-revKggKVbYGope6on-nYWa4 6216
DAJIN2/utils/__pycache__/io.cpython-310.pyc sha256=_EwLbmqnuy-hMwkhbCbpqatn0mkrkR1MbffgN240uhQ 3164
DAJIN2/utils/__pycache__/report_generator.cpython-310.pyc sha256=9xp05bUc-SkR30kxksoOB2zT3jFZPJDwjwtIUK3SaQs 2574
DAJIN2/utils/__pycache__/sam_handler.cpython-310.pyc sha256=Ep3-3yU8cKRlivILNMdzRLKFNt0-K-Od-35lQIwOwKM 7366
DAJIN2-0.3.1.dist-info/LICENSE sha256=mNuqjmHG0acqpWyJLuKPYarB6amPTkcfLjgHcWJ7Kko 1069
DAJIN2-0.3.1.dist-info/METADATA sha256=TU7QNFnVAkI5Zbd8WdMs6EkXl1frVc54sV0fTyv-0uk 7223
DAJIN2-0.3.1.dist-info/WHEEL sha256=yQN5g4mg4AybRjkgi-9yy4iQEFibGQmlz78Pik5Or-A 92
DAJIN2-0.3.1.dist-info/entry_points.txt sha256=ih-wsoT0P5Ju91eSHJM-Fagfo6FmrzTd5qjCEc88C6k 47
DAJIN2-0.3.1.dist-info/top_level.txt sha256=F_4sta5iaidmxG7P7JgXVbTso34N9MHwUmwsg4NzWW4 7
DAJIN2-0.3.1.dist-info/RECORD

top_level.txt

DAJIN2

entry_points.txt

DAJIN2 = DAJIN2.main:execute