enkie

View on PyPIReverse Dependencies (0)

0.1.2.post2 enkie-0.1.2.post2-py2.py3-none-any.whl

Wheel Details

Project: enkie
Version: 0.1.2.post2
Filename: enkie-0.1.2.post2-py2.py3-none-any.whl
Download: [link]
Size: 88154
MD5: 561888d9e08c7a6129df595207d8808e
SHA256: 8db5dc5d5588a472d3126cf7f4aafc9c2dddf09d9404d76d25286e0e6d0eb653
Uploaded: 2023-03-23 07:50:37 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: enkie
Version: 0.1.2.post2
Summary: ENKIE - The ENzyme KInetics Estimator
Author-Email: Mattia Gollub <mattia.gollub[at]gmail.com>
Project-Url: repository, https://gitlab.com/csb.ethz/enkie
Project-Url: documentation, https://enkie.readthedocs.io/en/latest/
License: MIT License
Keywords: enzyme,kinetics,catalytic rate,affinity,thermodynamics,estimation,metabolism,metabolic networks
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Requires-Python: >=3.8
Requires-Dist: click (~=8.1.3)
Requires-Dist: cobra (~=0.26.2)
Requires-Dist: equilibrator-api (~=0.4.7)
Requires-Dist: platformdirs (~=3.0.0)
Requires-Dist: requests-cache (~=0.9.4)
Requires-Dist: rpy2 (~=3.5.7)
Requires-Dist: pytest; extra == "test"
Requires-Dist: pytest-lazy-fixture; extra == "test"
Provides-Extra: test
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 1163 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.40.0)
Root-Is-Purelib: true
Tag: py2-none-any
Tag: py3-none-any

RECORD

Path Digest Size
docs/conf.py sha256=FrYrpiDOdHMKlJjJjY1Ve2rooflqSbAWtlVUp7NZ2Wg 3140
enkie/README.md sha256=tSZ8bYWLlQ3rWal3hA0GJXtxV3YPlpO_BoOk0a85aK0 1162
enkie/__init__.py sha256=sD2iPu4o8R9kgSjqxdz1um21JKSWviGHTbbnUEi3kI0 427
enkie/commons.py sha256=lzP53DE8VZvH9WyZcGHx76hTY0Od3a7SfoWvjKKDkPw 129
enkie/compartment_parameters.py sha256=dT5d0ctgGfVUmyArdcD4tAfWnDBMtCyrKneNiFKJPys 5291
enkie/constants.py sha256=UTjcr5Wcfc9R-WW93EPNHGWXIgOQESdQPAIix2NG6_k 899
enkie/distributions.py sha256=8h9jOwcaF5dlllcPbFN8QhB0H_HqwMf6OmHSG2QmhPo 7508
enkie/enzyme.py sha256=Z9G6ZisJFjIX4xfa6a5dPYHPc687GgtJ6ViUAMD9awo 1224
enkie/metabolite.py sha256=2sXrpnowkkYLMrtK-Hfm55brOH2lneeCixehXZXmdSw 1389
enkie/miriam_metabolite.py sha256=Mz6xs_EMKTWJwVF8OjTG51bOqB0UdZmEcZEkVET5200 2307
enkie/miriam_reaction.py sha256=VdneGseGAqWPXA-dk6fCPH0I-FerWVBryW2YYzVRvBM 2368
enkie/modular_rate_law.py sha256=6wC_FISy2EY17-HrcJO3LzpaPU2cYVNo91pUXQY9zOc 5019
enkie/parameter_space.py sha256=vzZNloZoArG-xHgU5Ky1NrtnztNysj4JHPFxTl5RGMQ 7649
enkie/reaction.py sha256=49LgmtdbJ01FkFarbLRRmwwZ9KI-Iaa3BqbmtW5gXH0 1627
enkie/singleton_meta.py sha256=UwUeIdjSe9PqkVf1uKBOYH0dGw0uh1LClz_vdbZ5QuI 626
enkie/storage.py sha256=CPl1_08_9fqIFjqz3BXzOfpKnzLWjNgwmbvV975W5gE 3014
enkie/utils.py sha256=hPsUwKKTkeeMu2HOjawUG7coTycvzSGsUBm1PeDFRc8 4813
enkie/console/cli.py sha256=e5BiwYa16B37daaD9YJuG9dK1A9LultEOZIA5GrKdiU 3392
enkie/data/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
enkie/data/ecs_curation.csv sha256=VGMXp2wCKZY4hRpt6i-P_OFEzGxGpkfKQJ6qLQJM3oQ 618
enkie/data/kinetics_prior_brenda.csv sha256=9_QG7FDZ_leVgjn2CHrgY4xbHOeY6_zgLCU0EPz_XAs 105
enkie/data/kinetics_prior_wide.csv sha256=6uX58_u-aJ1usLfktfCezAko4rLZdNCNj2RhTneCElo 73
enkie/data/metabolite_mappings_curation.csv sha256=KlYr5_tsQKuaDCexhoke4qniwc7ApnkttrY_VttxGa0 536
enkie/data/reaction_mappings_curation.csv sha256=YFkYatvhE9vlPjIQpIHPrVgEGCUTP_his3YZ2_ll0EA 2844
enkie/data/compartment_parameters/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
enkie/data/compartment_parameters/default.csv sha256=oKXf6ZMWIh8d05bc2Ak30lwpd0xH0iGf0krIUUQW0eM 339
enkie/data/compartment_parameters/e_coli.csv sha256=HMiDMouaMaWPjcW2zqZbvx-0LYQMWurn6QXPmBcJj5c 112
enkie/data/compartment_parameters/human.csv sha256=foe_hWXb8HFOOMoR0p2gvvxa-SvIuCswbpDagzZub5w 404
enkie/dbs/__init__.py sha256=URyvDG-_2s1MlAZw2XLcEJT7K5a92mT4CZmvri6i-Bg 253
enkie/dbs/kegg.py sha256=Dc1Xqr4wO5D7z9suLOCrrUap_6jJdiqOk0NyGArVAUw 1347
enkie/dbs/metanetx.py sha256=U1VH9Dez5YMu7Z5ZaPWcqd-KSJtmWI0evDMyZklAlDo 13523
enkie/dbs/uniprot.py sha256=gznCAWujDiOAtwTM8TzjzDsDMx9AyHMosJmluHFTCwA 10179
enkie/estimators/__init__.py sha256=x_ux0jxg9EHsc9edCauS_09T03WP04w6Y7leHjpCYP8 480
enkie/estimators/bmm_kinetic_estimator.py sha256=DrKQlgCzeH_kwU0tc5QR0y1XNt0-aeYW0HJ5LpG1h4k 9371
enkie/estimators/equilibrator_gibbs_estimator.py sha256=3FgRRoPg_6KHt-Tc6cHZTY13Z1nGREkndSRhSMJANsA 11741
enkie/estimators/fixed_kinetics_estimator.py sha256=sd-9S94CJF8l0FXj_K8_FVkGE9Z2ve-YJ6pC2mZY9rY 3460
enkie/estimators/gibbs_estimator_interface.py sha256=lFNZmT2ZAEmVzcVtcq-PsxL7F7KXifn6hTAYmeqX9Wc 1809
enkie/estimators/kinetic_parameter_types.py sha256=K6SNcUyBe3p3kJqIMXT7UVnPSnhjCb-UOrcNly0x2I4 228
enkie/estimators/kinetics_estimator_interface.py sha256=kDFMob3xXROm_IFQNf-jNXNSnMiVNz4id2W2rHKjMfg 1788
enkie/estimators/parameter_balancer.py sha256=ay-sj_XNrVRUXb4K0XaHGU4c_niSVZ6-MqTiRTIWRTU 11879
enkie/io/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
enkie/io/cobra.py sha256=kbkAQX46lOqB9Bmy-5nvWEfos98mAdjDDiW-ChpQTGs 16242
tests/conftest.py sha256=o7uQgxYDY4MnlpTtl2zovSpj8cS0YHSF_8RP3NYqtp8 4120
tests/test_bmm_estimator.py sha256=qvjBJvjbAj2aKb3m_wRkkcVBJjR5S2qJqfWSs4gB3Hg 1534
tests/test_equilibrator_gibbs_estimator.py sha256=GYUXgxSUMVO7SjO0Y2lgynZ0AWe-ZCDvY8-C9NmuH2Q 3981
tests/test_parameter_balancing.py sha256=FcHLgImWLrUfNel4zrNI6wpoV0Fd0XDGbjVP-SPmmvk 3200
tests/test_parameter_space.py sha256=vf4DdM2A-JZ4MgismiWtHfZzUFepF4FwlTzRD_DQNFg 1824
training/data/a_merge_databases.py sha256=vSEJhFBAVnVup3m7ZMH2AdGJkFxKuUkkuhREsfjghE8 4100
training/data/b_add_proteins.py sha256=h4uVaUHEtLxoga6cclEQV6Vnd9Bed7jTLR18iLB5Es0 2906
training/data/c_add_families.py sha256=3TVbHQPCuHTYx4j8enKyqJI_fn6Oz00e9iUEZ_oC2I4 4896
training/data/d_split_ecs.py sha256=HKIBOYk3pWd4GruDAH61VyclLeavA9qU8bVdkfq_wmE 423
training/data/e_cleanup.py sha256=u5xzO6JpMQvrfmZqas7viZ0OA1tWQX_ftb7KPEOPlAQ 4863
training/data/f_summary.py sha256=ryd_4oIM_GiedETmfYgKcLrC1jqv9mJbQrUWXFoioUU 2098
training/data/g_create_splits.py sha256=LnXrWXFollFkmyOXAGwusASUZmedF5wEvKwhIzuLB2s 4294
training/data/brenda/a_brenda_parse.py sha256=4zjHA45zJMpzm11vM9orfo_Bm5t9CqeMw990jDaG4Rg 3518
training/data/brenda/b_brenda_metanetx_ids.py sha256=Zu1geILcBjGDziJpYuKk1bPX9R9A7haLr4K0DCfw2wQ 4104
training/data/sabio-rk/a_main.py sha256=d-UDoDDe2ZIB_341I9NC7_aLtcSeg5xrbs3wPRYOh98 20404
training/data/sabio-rk/b_add_ncbi_ids.py sha256=twE_jT9Ck017d6ANGTq7ebhJ6r_MnHqhm3k2ee2HL1k 6919
training/data/sabio-rk/c_split_ec_number.py sha256=qDXFQrsKtha87ZvZ2GwCzy0KRqWh5___zSp8Hf71Fs8 5116
training/data/sabio-rk/d_add_substrate_mnx_ids.py sha256=-1Br2nsa2lwkFU8OYmliLuQ0Btlzt5PYZzAGGYzCANw 10342
venv/bin/activate_this.py sha256=S5kxBKlB4KOwfOp3HpOY3TiYXDCKPHrnRHCilCElXvg 1176
venv/bin/rst2html.py sha256=XPBAgJV2ABVQEwMXHlI_6_qsTEkk6yEK9QX1inhLm_k 614
venv/bin/rst2html4.py sha256=8QjqgsErPbCK8Dgt9q44KtWJN96KRYrrC0iN1Ccm8F4 736
venv/bin/rst2html5.py sha256=_ABV5QkrMmUTLYynp5jSzy8BNd2O-vfUdGvvtLqp29I 1081
venv/bin/rst2latex.py sha256=3NIe-wr9iT5p-csckWVyoQmhp2kRXZllwm1GigEK2KU 813
venv/bin/rst2man.py sha256=OmzvNa-WQSHSbfwnMrJwS6uR-b9R8wE8cSlUAHRYS6A 636
venv/bin/rst2odt.py sha256=OjHRolKL0m9ZIuAIAqRMJTIo7Qgrw5OgRUV0VWDsgn0 802
venv/bin/rst2odt_prepstyles.py sha256=NyG8Yw-BUEP76zxeSysrZxQEylJF4_3g-acLyTqXbgY 1740
venv/bin/rst2pseudoxml.py sha256=1U9tYgq7OwpjBOX5tGj9c3qHsWibpNOCPoO1C4ObEYs 621
venv/bin/rst2s5.py sha256=hfUPa6eCVGTx8jWCo0hx3THweOEj8E2BHGrIZG5F1DY 657
venv/bin/rst2xetex.py sha256=_nu6uk0xmLrNGoO9pI4EtC_zZE4ugE15e5C5p3GKFgQ 893
venv/bin/rst2xml.py sha256=Briw7MORdWTUSAftNKlrfRg2V-9uDUplgtg-dsZcqqo 622
venv/bin/rstpep2html.py sha256=5cHXS2belDC_rhPD7sKTgUT4y9SIJpszxI5mZMcu9iw 690
enkie-0.1.2.post2.dist-info/LICENSE sha256=btdFh7P89MfECY8gz4VN0qDT67egGVWoJRZYl4cj9W4 1149
enkie-0.1.2.post2.dist-info/METADATA sha256=OKFq5VUyi43hexurBe2v_AM9Sc_yQE_Ma2Vvk25kzgU 2483
enkie-0.1.2.post2.dist-info/WHEEL sha256=a-zpFRIJzOq5QfuhBzbhiA1eHTzNCJn8OdRvhdNX0Rk 110
enkie-0.1.2.post2.dist-info/entry_points.txt sha256=hjwW9mZ3nNd3AyVi9KsLjN0g23-tePBUmb3K2-lNEf4 49
enkie-0.1.2.post2.dist-info/top_level.txt sha256=qsZPwjFlE8YHbUHpjzI7fLFs50P8fCz7XdzSeX6kGs8 31
enkie-0.1.2.post2.dist-info/zip-safe sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs 1
enkie-0.1.2.post2.dist-info/RECORD

top_level.txt

docs
enkie
tests
training
venv

entry_points.txt

enkie = enkie.console.cli:main

zip-safe