Reverse Dependencies of gtfparse

The following projects have a declared dependency on gtfparse:

• anngtf — anngtf - lift annotations from a `.gtf` file to your AnnData object.
• cancer-data — Preprocessing for various cancer genomics datasets
• concise — CONCISE (COnvolutional Neural for CIS-regulatory Elements)
• efishent — RNA FISH oligos/probes design tool.
• geney — A Python package for gene expression modeling.
• GTFast — GTFast - cache and subset a `.gtf` file as a `.csv` for faster subsequent use.
• infercnvpy — Infercnv is a scalable python library to infer copy number variation (CNV) events from single cell transcriptomics data. It is heavliy inspired by InferCNV, but plays nicely with scanpy and is much more scalable.
• LeafletSC — Alternative splicing quantification in single cells with Leaflet
• lrgasp-tools — LRGASP tools
• mbf-genomics — All about intervals on genomic data
• ngsderive — Forensic analysis tool useful in backwards computing information from next-generation sequencing data.
• pyensembl — Python interface to Ensembl reference genome metadata
• pyvariant — Map biological sequence variants (mutations) to their equivalent chromosome, cDNA, gene, exon, protein, and RNA positions.
• SIRVsuite — SIRVsuite - a command line tool to QC an RNA-Seq workflow using Lexogen's SIRV spike-in controls
• utrcalling — Package with tools to calculate molecule UTR sizes from RNA sequencing reads.
• vatools — A tool for annotating VCF files with expression and readcount data
• vcf-annotation-tools — A tool for annotating VCF files with expression and readcount data