Reverse Dependencies of intervaltree

The following projects have a declared dependency on intervaltree:

• acheron — Plotting and recording program for Asphodel devices
• advent-of-code-wim — Wim's solutions for https://adventofcode.com/
• aindex2 — Perfect hash based index for genome data.
• AnnoKit — annotation toolkit.
• audiomate — Audiomate is a library for working with audio datasets.
• avatar2 — A Dynamic Multi-Target Orchestration Framework
• bashrc — no summary
• bgparsers — Library to read and parse mutation and region files.
• biobit — Rust-powered Python library for biological data analysis
• biobookshelf — a collection of python scripts and functions for exploratory analysis of bioinformatic data in Python
• bioc — bioc - Processing BioC, Brat, and PubTator with Python.
• boml — A Bilevel Optimizer Library in Python for Meta Learning
• borzoi-pytorch — The Borzoi model from Linder et al., but in Pytorch
• boxjelly — BoxJelly is a tool for viewing and editing object tracks in video.
• broken-source — 🚀 Broken Source Software Main Library
• callingcardstools — A collection of objects and functions to work with calling cards sequencing tools
• cdot — Transcripts for HGVS libraries
• cenplot — Centromere plotting library.
• CenStats — Centromere statistics toolkit.
• chess-hic — Quantitative comparison and automatic feature extraction for chromatin contact data.
• clime-issue-density — CLIME - Issue density of a Git repository.
• clime-issue-spoilage — CLIME - Issue Spoilage
• clinlp — Performant and production-ready NLP pipelines for clinical text written in Dutch
• compare50 — This is compare50, with which you can compare files for similarities.
• ConSReg — condition-specific regulation
• coolbox — Jupyter notebook based genomic data visulization toolkit.
• cpcat — A portable, scalable, and fast AI Data Lakehouse.
• ddrescue-bad-files — Correlates file system data to bad block data from GNU ddrescue map files
• decoil — EcDNA reconstruction from long-read nanopore data
• deltacat — A portable, scalable, fast, and Pythonic Data Lakehouse for AI.
• dgenies — Dotplot large Genomes in an Interactive, Efficient and Simple way
• diffir — Tool for visually diffing the difference between two TREC run files.
• django-danceschool — The Django Dance School project: a modular, reusable set of designed to integrate all of the regular functions of a social dance school with the Django CMS content management system
• dolphindb-tools — A tool package based on DolphinDB Python API.
• dover-lap — Combine overlap-aware diarization output RTTMs
• dretools — A software package for finding differential RNA editing.
• duptextfinder — Detect duplicated zones in (clinical) text
• ebb-lint — lint for ensuring quality software
• emzed-spyder — emzed IDE, see also https://emzed.ethz.ch
• ensembl-genomio — Ensembl GenomIO -- pipelines to convert basic genomic data into Ensembl cores and back to flatfile
• ensembl-rest — An interface to the Ensembl REST APIs, biological data at your fingertips.
• espm — Electron SPectro-Microscopy Python Library
• eth-wake — Wake is a Python-based Solidity development and testing framework with built-in vulnerability detectors.
• exclusionms — Python package for working with exclusionms-api and exclusionms-streamlit
• faust-streaming — Python Stream Processing. A Faust fork
• fenestrate — no summary
• ficus-pm — The modern Process Mining toolkit
• gatenlphiltlab — Interface for parsing and manipulating GATE annotation documents
• Gedi — Generating Event Data with Intentional Features for Benchmarking Process Mining
• genmod — Annotate genetic inheritance models in Variant Call Format (VCF) files
• genomkit — genomkit
• genopandas — Datastructures for manipulating, querying and plotting genomic data.
• GFHunter — GFHunter is a long read sequence transcriptome alignment-based fusion genes detection tool.
• google-cloud-documentai-toolbox — no summary
• govcf — govcf
• graphtage — A utility to diff tree-like files such as JSON and XML.
• gtirb — GrammaTech Intermediate Representation for Binaries
• HAPpy-ABCENTH — no summary
• heareval — Holistic Evaluation of Audio Representations (HEAR) 2021 -- Evaluation Kit
• HiCExplorer — Set of programs to process, analyze and visualize Hi-C data
• HiCMatrix — Helper package which implements HiCMatrix class for HiCExplorer, pyGenomeTracks and scHiCExplorer.
• hydra-lsp — Language server for Hydra YAML config files
• igv-reports — Creates self-contained html pages for visual variant review with IGV (igv.js).
• imfusion — Tool for identifying transposon insertions in Insertional Mutagenesis screens from gene-transposon fusions using single- and paired-end RNA-sequencing data.
• interval-git — Top-level package for igit.
• iocsearcher — A library and command line tool for extracting indicators of compromise (IOCs) from security reports in PDF, HTML, or text formats.
• ipymarkup — NER, syntax tree markup visualisations for Jupyter Notebook
• iris-av — IRIS: Detection and Validation Of Chimeric Reads
• isotools — Framework for the analysis of long read transcriptome sequencing data
• iTheraPY — Environment for iThera Python tools
• khipu-metabolomics — Common utilities for interpreting mass spectrometry data
• kipoi_veff — kipoi_veff: variant effect prediction plugin for Kipoi
• knowde — no summary
• labella — Python clone of Labella.js that supports TikZ output
• lhotse — Data preparation for speech processing models training.
• lifton — Combining DNA and protein alignments to improve genome annotation with LiftOn
• ls-trace — Datadog tracing code
• lst-pressure — Determine periods of "LST pressure" by querying for intersections between LST/Solar intervals
• luis1996 — my description
• luisito1996 — my description
• luisito19963 — my description
• magelang — A modern lexer/parser generator for a growing number of languages
• magenta-gpu — Use machine learning to create art and music
• MAGOT2 — "New, simpler toolkit for random common genomic analyses"
• manticore — Manticore is a symbolic execution tool for analysis of binaries and smart contracts.
• mapc-dcf — IEEE 802.11 DCF Simulator
• medkit-lib — A Python library for a learning health system
• meerk — no summary
• mexca — Emotion expression capture from multiple modalities.
• mgnify-pipelines-toolkit — Collection of scripts and tools for MGnify pipelines
• mkdocs-juvix-plugin — MkDocs documentation with support for Juvix Markdown files
• mkreports — A package to programmatically create mkdocs sites.
• mobgap — A Python implementation of the Mobilise-D algorithm pipeline for gait analysis using IMU worn at the lower back.
• MtbTk — MtbTk: Genomics Analysis Toolkit for Mycobacterium Tuberculosis.
• ncgocr — Named Concept Gene Ontology Concept Recognition
• neoepiscope — comprehensive neoepitope prediction software
• note-seq — Use machine learning to create art and music
• npf-renderer — A Python Based Renderer for Tumblr's Neue Post Format (NPF)
• nretools — A software package for finding differential A-to-I editing.
• nttai-faust-streaming — Python Stream processing.