Wheelodex » Projects » lifesci

lifesci

View on PyPI — Reverse Dependencies (1)

0.3.2 lifesci-0.3.2-py3-none-any.whl

Wheel Details

Project: lifesci
Version: 0.3.2
Filename: lifesci-0.3.2-py3-none-any.whl
Download: [link]
Size: 119856
MD5: 51102d17d73c646c8e809a5210defda5
SHA256: afde770e5c18343594829b4582411307bc1e5893bccb6c515d6ec78f3665d331
Uploaded: 2023-04-09 13:07:59 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: lifesci
Version: 0.3.2
Summary: This repo contains python3 life sciences utilities.
Author: Brandon Malone
Author-Email: bmmalone[at]gmail.com
Home-Page: https://github.com/bmmalone/pylifesci
License: MIT
Keywords: bioinformatics utilities
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.9
Requires-Dist: biopython
Requires-Dist: goatools
Requires-Dist: joblib
Requires-Dist: mygene
Requires-Dist: numpy
Requires-Dist: matplotlib
Requires-Dist: mhcnames
Requires-Dist: pandas
Requires-Dist: pepdata
Requires-Dist: pillow
Requires-Dist: pyensembl
Requires-Dist: pyllars
Requires-Dist: pysam
Requires-Dist: sexpdata
Requires-Dist: tqdm
Requires-Dist: weblogo
Requires-Dist: codecov (==2.1.12); extra == "dev"
Requires-Dist: coverage (==6.5.0); extra == "dev"
Requires-Dist: docutils (==0.19); extra == "dev"
Requires-Dist: pylint (==2.15.5); extra == "dev"
Requires-Dist: pytest-console-scripts (==1.3.1); extra == "dev"
Requires-Dist: pytest-cov (==4.0.0); extra == "dev"
Requires-Dist: pytest-datadir (==1.4.1); extra == "dev"
Requires-Dist: pytest (==7.2.0); extra == "dev"
Requires-Dist: setuptools-scm (==7.1.0); extra == "dev"
Requires-Dist: sphinx-argparse (==0.3.2); extra == "dev"
Requires-Dist: Sphinx (==6.1.3); extra == "dev"
Requires-Dist: sphinx-rtd-theme; extra == "dev"
Requires-Dist: coveralls; extra == "dev"
Requires-Dist: pytest-runner; extra == "dev"
Requires-Dist: twine; extra == "dev"
Requires-Dist: readme-renderer[md]; extra == "dev"
Provides-Extra: dev
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 565 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.38.4)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
lifesci/__init__.py sha256=NqPq2ozU23EOS7YS-FVP4QJZVhLgzQ_ftoNcOHrpOh0 306
lifesci/_version.py sha256=y3GIHFtktEeT-ZmP-R2vRfLQseXGaBSAF8PfU53L9n4 160
lifesci/amino_acid_utils.py sha256=WGPEhvA_kvXRMN7mBAN7rGj29CJ3jinXfJssaf-XRLU 7675
lifesci/bam_utils.py sha256=7j2Lng-M7wgAKLorof5iTsrHWkG7TaKlbfd3R6Shhj4 12544
lifesci/bed_utils.py sha256=z-E1nAdUEYjdXy2DqQDTkgPs8G_eao-1lHwdUAUOozI 103824
lifesci/bio.py sha256=doOG6meurtyyUrLF4-C8GhvIY3IuLCEX-UXCeIRXZwg 11998
lifesci/fastx_utils.py sha256=Ix-jdBEAZP7kp5i2Fvq6ZP4rKD4kfbrDWDVEYoKyZL0 18497
lifesci/gene_ontology_utils.py sha256=FZXPqUwShXAFW9RqmuFlJaNcjjpmjGcqL-1qldUBB8s 9004
lifesci/gffread_utils.py sha256=7bgFkSyM5-zF-MROusUYZ3sMMPErt1GoT6SnfCtblBc 9638
lifesci/gtf_utils.py sha256=e_CgxoyCI7IVS9Z4W5HCCKcEicuelbhwOGcYbAMQbZ8 12072
lifesci/igv.py sha256=cgvtXaaEo89WJU3xUITWddYiPyuNqlYZB9B3eqq84YM 4973
lifesci/meme_utils.py sha256=92Em9M8hqvlgbohyhmDJGwF25SnJTp4shqmHY26Cf60 10195
lifesci/metacyc_utils.py sha256=BT9yKYA_kZpnZstbgVLiZhZt4-SaSouUfrOwjCEaB4I 6049
lifesci/mhcnames_utils.py sha256=9emWr7Ch2RTqthfXvuI0t_P9I1z5c7qTUz9cVXm7570 5144
lifesci/msa_utils.py sha256=Tnj4uCft29oho7l-jCeb5hfPGlgyhncMTGdOcznfKq0 3323
lifesci/mygene_utils.py sha256=fZAPFQQi9jC1YqKy_VKK0bpS7gQJ81lUD4SiOrkndbo 11255
lifesci/peptide_dataset.py sha256=D8nHNyeBA-apoaG7O5UpISCy7aSK1EHookqSp8PX6iU 2660
lifesci/pyensembl_utils.py sha256=8hLtc_9N0kx5nSBjtDeh-FKBuRiT1JduwX8WJIriZcI 10336
lifesci/sequence_similarity_utils.py sha256=64W3NXGdXwkxhAjg2pZqzu0rrbMsjRemveK8ZQQT84o 11783
lifesci/star_utils.py sha256=P2asCGZdHcVssdtiix6sXDHtIYvOQW_5UI_CHgJnfZg 5997
lifesci/bio_programs/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
lifesci/bio_programs/bam_to_wiggle.py sha256=4DUFR3QAr3eWeSmUYpHW9Qa_96dMjH37KgqnBVrAQzU 6141
lifesci/bio_programs/bed12_to_gtf.py sha256=t7WjNTnN7BAdp_b0Eesg2G1qBzUlYTDL01V4WaH8tLU 2512
lifesci/bio_programs/bedx_to_bedy.py sha256=s-RjTn_DgXAziXk1lMhW7KDwFSRJ-8MO4fPBC6O8Irk 2374
lifesci/bio_programs/calculate_bed_overlap.py sha256=F6VD2BKUy9pvLUYE-8Erru1pwI5CdXUs-lWQVVV_8Vs 2476
lifesci/bio_programs/convert_ccds_to_bed.py sha256=r6rTi37WOC9SQJ6z1Zk6gbZ9j0iNdNc85BH02AgipV0 3222
lifesci/bio_programs/count_aligned_reads.py sha256=LlNYEWwTi-zco2QG5AwPTe7nnbm4j5n4qyIYH3Ldg60 1721
lifesci/bio_programs/count_reads.py sha256=XYJ-bam4Diu3xWgxvL_FD_CHSse4bY20ZwMGkiXH89g 1330
lifesci/bio_programs/create_mygene_report.py sha256=pp1D_LT9lnoH5OkGFLp-gC5mDqL_quZHdTl3Af895zM 3178
lifesci/bio_programs/dna_to_aa.py sha256=qSIbni3y-3v_kEGa8hDAO9obhBJkYhkjSiN1d9q9XaY 1027
lifesci/bio_programs/download_srr_files.py sha256=ow3JCkovZY6eKFl2nImdWOP1zqPkZpT17kigVypCtPY 8924
lifesci/bio_programs/extract_bed_sequences.py sha256=8rV8vXQRc6vsXANCRK9dRzLRnw0HWILaU9oFSVE5BLo 1622
lifesci/bio_programs/extract_cds_coordinates.py sha256=BRXv5HT8kgZ5LV5ZsmrePFPB4eIZxUoiG2BJ6YWyBoU 1392
lifesci/bio_programs/fasta_to_fastq.py sha256=rMpsAaxEsnN6V5tfbZ_o0hbDSZypS9W118Vp9qlgwa0 1993
lifesci/bio_programs/fastq_pe_dedupe.py sha256=5-XXIOp0zzDIdLh9ZvY8f8DCXdHbt12CQGOQ7pf_Rss 3828
lifesci/bio_programs/filter_bam_by_ids.py sha256=DzXIP3OgylQhr2ezcLBUbo9tIZfO5ZbDjK7lEaMU7_M 1412
lifesci/bio_programs/fix_all_bed_files.py sha256=copHIiOweKL_gvuIYT89Mer7o6ukHcSP615BuHcrbKw 1684
lifesci/bio_programs/get_all_utrs.py sha256=k-Nt0kFqBqxBJ1U66_QovwoKXjojiX1QOdfoy8Wfp9c 836
lifesci/bio_programs/get_read_length_distribution.py sha256=skcifYoiBxuLUSV433hOD6NAenQHNE8ENvWHdWHSfMQ 4212
lifesci/bio_programs/gtf_to_bed12.py sha256=Y08S_2XL7QczCAXntIf8K7bwaFFFuMBHY-XfMROMUoI 6400
lifesci/bio_programs/join_long_chromosomes.py sha256=_f-8IBNSI88WSEu74K9P8byc1P_FAburifDsGACWPO8 2668
lifesci/bio_programs/merge_isoforms.py sha256=bNHN33fjjKNA1sTOvG_smenoi6ZpKAfyua1ELUyaFFE 6604
lifesci/bio_programs/parse_meme_names.py sha256=CGjPTCKviYL6V9kAsXo1pCez3YGFJf1fLlzDNe8XDcM 4039
lifesci/bio_programs/remove_duplicate_bed_entries.py sha256=MwJEWzrTIS97tPf--8-Ex18nskaGCFOxDbP24rIlzx4 2098
lifesci/bio_programs/remove_duplicate_sequences.py sha256=7SiYt_i6jWj69SYy2I8Gyy_jCc9J6yAg_3fXRIAWqmA 2237
lifesci/bio_programs/remove_multimapping_reads.py sha256=Ot3wzouitVqwzpQO_PBnVAw_zDTwN6i5ToxPPCzYuo0 1174
lifesci/bio_programs/reorder_fasta.py sha256=n1_M3yHHmsuS4bZmPF70010zvgncYgGpXUqFWoVEDtU 1967
lifesci/bio_programs/run_bowtie.py sha256=SdJZFv_UVUUrj_mh7NwnNpWVIJKHeqjn4PvM_RsdUt0 2909
lifesci/bio_programs/split_bed12_blocks.py sha256=MjslOx97Gg8Y84uj1vYlWGOjJh5Y3PBwW9OHXmwmrHA 2477
lifesci/bio_programs/split_long_chromosomes.py sha256=aKp8ecpntv3-40Iz_Y3FbLlDlscfHwiAHo05nc3Zdug 3775
lifesci/bio_programs/subtract_bed.py sha256=Jd8DFrzeIReQqcM3lfsg-96qOh3Dp7qVZe6ZLK_PHAs 6094
lifesci/bio_programs/plotting/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
lifesci/bio_programs/plotting/create_aligned_read_count_bar_chart.py sha256=kr445bUA9hIN2N3wcRW1YprU0WNYsam6DWpp16pAv-8 2531
lifesci/bio_programs/plotting/plot_read_length_distribution.py sha256=-zzBzg1Z0U75rB_PMjl0MzGqaH4FuOFm_wAM6yZqzEw 4037
tests/TestBedUtils.py sha256=jjkn8oPN5-NPtnxqUn33-CwxYeDIQK7qnMxAXa4hqgc 20447
tests/TestGtfUtils.py sha256=As-kYrQDU71fEiCkPw4UPiVUoGIrPeMaySCBnvbsJAw 3555
tests/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
lifesci-0.3.2.dist-info/LICENSE sha256=bkSaWnnQxwPq7W_JHLcFcex26bG6UeYaYxPLB4L7DdI 1071
lifesci-0.3.2.dist-info/METADATA sha256=93D3eD5E3R6fKLpJCSpmcJhttQTbh5lEop1f4I_w7B8 2198
lifesci-0.3.2.dist-info/WHEEL sha256=2wepM1nk4DS4eFpYrW1TTqPcoGNfHhhO_i5m4cOimbo 92
lifesci-0.3.2.dist-info/entry_points.txt sha256=nCqXBw6mEv8BfFpQBPfhGAQEHuoTbKY4jy_HReeEjgU 2160
lifesci-0.3.2.dist-info/top_level.txt sha256=p416Buj08n8z_EesVQuLmiD8z8-SrnZqpzsWTcnBWqA 14
lifesci-0.3.2.dist-info/RECORD — —

top_level.txt

lifesci
tests

entry_points.txt

[console_scripts]
bam-to-wiggle = lifesci.bio_programs.bam_to_wiggle:main
bed12-to-gtf = lifesci.bio_programs.bed12_to_gtf:main
bedx-to-bedy = lifesci.bio_programs.bedx_to_bedy:main
calculate-bed-overlap = lifesci.bio_programs.calculate_bed_overlap:main
convert-ccds-to-bed = lifesci.bio_programs.convert_ccds_to_bed:main
count-aligned-reads = lifesci.bio_programs.count_aligned_reads:main
count-reads = lifesci.bio_programs.count_reads:main
create-aligned-read-count-bar-chart = lifesci.bio_programs.plotting.create_aligned_read_count_bar_chart:main
create-mygene-report = lifesci.bio_programs.create_mygene_report:main
dna-to-aa = lifesci.bio_programs.dna_to_aa:main
download-srr-files = lifesci.bio_programs.download_srr_files:main
extract-bed-sequences = lifesci.bio_programs.extract_bed_sequences:main
extract-cds-coordinates = lifesci.bio_programs.extract_cds_coordinates:main
fasta-to-fastq = lifesci.bio_programs.fasta_to_fastq:main
fastq-pe-dedupe = lifesci.bio_programs.fastq_pe_dedupe:main
filter-bam-by-ids = lifesci.bio_programs.filter_bam_by_ids:main
fix-all-bed-files = lifesci.bio_programs.fix_all_bed_files:main
get-all-utrs = lifesci.bio_programs.get_all_utrs:main
get-read-length-distribution = lifesci.bio_programs.get_read_length_distribution:main
gtf-to-bed12 = lifesci.bio_programs.gtf_to_bed12:main
join-long-chromosomes = lifesci.bio_programs.join_long_chromosomes:main
merge-isoforms = lifesci.bio_programs.merge_isoforms:main
parse-meme-names = lifesci.bio_programs.parse_meme_names:main
plot-read-length-distribution = lifesci.bio_programs.plotting.plot_read_length_distribution:main
remove-duplicate-bed-entries = lifesci.bio_programs.remove_duplicate_bed_entries:main
remove-duplicate-sequences = lifesci.bio_programs.remove_duplicate_sequences:main
remove-multimapping-reads = lifesci.bio_programs.remove_multimapping_reads:main
reorder-fasta = lifesci.bio_programs.reorder_fasta:main
run-bowtie = lifesci.bio_programs.run_bowtie:main
split-bed12-blocks = lifesci.bio_programs.split_bed12_blocks:main
split-long-chromosomes = lifesci.bio_programs.split_long_chromosomes:main
subtract-bed = lifesci.bio_programs.subtract_bed:main