psamm
View on PyPI — Reverse Dependencies (2)
| 1.2.1 | psamm-1.2.1-py2.py3-none-any.whl |
Wheel Details
| Project: | psamm |
| Version: | 1.2.1 |
| Filename: | psamm-1.2.1-py2.py3-none-any.whl |
| Download: | [link] |
| Size: | 919024 |
| MD5: | d0a6de91be6dfb8c377f596be5659d44 |
| SHA256: | f9f37eb367ee4aa6c89d546cbd1270eb95a862db3ee6d1cd5ac0a91b7fecb8e1 |
| Uploaded: | 2022-05-12 20:52:43 +0000 |
dist-info
METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt
METADATA
WHEEL
| Wheel-Version: | 1.0 |
| Generator: | bdist_wheel (0.37.1) |
| Root-Is-Purelib: | true |
| Tag: | py2-none-any |
| Tag: | py3-none-any |
RECORD
| Path | Digest | Size |
|---|---|---|
| psamm/__init__.py | sha256=t5IQrBOnWangQ2tc-nU-ySQNlj1wlchVagVE4uiN1dI | 931 |
| psamm/balancecheck.py | sha256=rH_q_G4WWiugVJbyWPqrtlcqXSRAtk_wQ617RyHPUBw | 3910 |
| psamm/bayesian.py | sha256=cFkCxo0CiWs_vjimAOADePZRMO6siBRw9AxWOJ_l3A0 | 35065 |
| psamm/bayesian_util.py | sha256=UKGUUsM4PDNJDJkSlTtFA_B2QOkg1zQmWktMqSzTuUM | 5074 |
| psamm/command.py | sha256=qjqpWkRep2yNIyiJM4ohSIjda5-0GvHBL_6vNajfes4 | 22889 |
| psamm/database.py | sha256=mO4L1X3Xeve2sZIlJ9rbDW8WYNlcFs8bXg7v-5ytQSQ | 12049 |
| psamm/fastcore.py | sha256=cQRjq1HOclO4VM3so9kizqYwsu3wNBrTZ6mCmmHn2uQ | 12506 |
| psamm/fastgapfill.py | sha256=rPmpumMSF-z7tnmgB5dxjjLlmI19JcraEvcOg_0Ccis | 2300 |
| psamm/findprimarypairs.py | sha256=sjB5QlFgFuTQZIRxINooARuuvteGc2N_vmXLLk-GYHI | 16926 |
| psamm/fluxanalysis.py | sha256=9hdbmeiJF8c-Nk9PoPKeL_zA-X3y0UOM6Terl6H4jvY | 17534 |
| psamm/fluxcoupling.py | sha256=BAS8Yp5QWB1vRdknI4Xn88Dk12AwD2GcCJgo5XTX-eA | 4700 |
| psamm/formula.py | sha256=GCrAC6YwaZgpneyWRy9qQ-t-MD2bKEN8_bt-meGDtGA | 16789 |
| psamm/gapfill.py | sha256=NEnE6yALZDabPEPa48fckew-gSk6vMpLrn5Qg9hU2RQ | 11063 |
| psamm/gapfilling.py | sha256=_-DaPX6Uajh55XIbJAV6p4O8EZvblUWpH5_y_zMBSHg | 8696 |
| psamm/generate_biomass.py | sha256=_P8nuy1Bj4rycf2xwPNMRBNXQBIWbDhRrh9fUe4GlmA | 19641 |
| psamm/generate_model.py | sha256=NmmZp_BO7ge7r5BinJD0Vsg9ASXRHDm647HMaWqxJYI | 52137 |
| psamm/graph.py | sha256=65cCf_CvZqC6tGdnv-slrgcwzUmVZrFDCKSQOb9BF4E | 38397 |
| psamm/importer.py | sha256=BWRQWalhGHaJG_YZRQkRMDvscl9V0TGrog_XdadTwLk | 30622 |
| psamm/manual_curation.py | sha256=6KGTKamGcXtYcNdzqhhBmP_vVUps5uQjeobnQmYSoJk | 10151 |
| psamm/mapmaker.py | sha256=x2Ls9-M6Up1Sys5sAo3FUfgffx7PWVBmU7LXm_6zCAA | 8498 |
| psamm/massconsistency.py | sha256=-R2Y9h5AWQHa8nJUZshbv9CGqfOavPsvVkkeEugf8xg | 7176 |
| psamm/metabolicmodel.py | sha256=6ttrADgbF8K64I7zjtq9RYX5ABXcggAvTN18RCVZJ_A | 22174 |
| psamm/moma.py | sha256=x1t6YsZN62Y30ArkZMYkkgzY-ZndBkndg1hhiDxrZcA | 13868 |
| psamm/randomsparse.py | sha256=8N0W-Esjkf615GiEbLongbojkgJtQ1q0yzqX1lz3Tok | 10522 |
| psamm/reaction.py | sha256=q6VjVfIV-PDLhUgbNdyQdmxU0ok8pc8Qi_jmcO7dnOQ | 13960 |
| psamm/translate_id.py | sha256=K8-z0QxUu6NBxWBhR14JaUW3eOoqFMyu7icmjOqB2Ps | 8741 |
| psamm/util.py | sha256=GHd5lE4Fn2eNOZsebSbMcfvFdo6pC2ZLzWXPRMd0sIU | 7861 |
| psamm/commands/__init__.py | sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU | 0 |
| psamm/commands/chargecheck.py | sha256=ol4R0ivdXJ4Y_uen3jv5wtp232nMEOz33JJJjMWVbpQ | 3117 |
| psamm/commands/console.py | sha256=3Zzyb2LsKIV0n9wqhPLQs-q4mp6TFYHJF8jD54eIqcg | 2723 |
| psamm/commands/duplicatescheck.py | sha256=H_iZam6VjFIrSK-sSljKI92QCKuuf2kK6i_N8vPz5W4 | 2688 |
| psamm/commands/excelexport.py | sha256=NB559M3mzShLHoPJuUFpgecsa7oJPbay3lTPv5mm8SE | 7510 |
| psamm/commands/fastgapfill.py | sha256=tt-FrWSqQ-i2RdAJXYZTiEJu0jpjaFRfSboTosjZGh8 | 4730 |
| psamm/commands/fba.py | sha256=s_cNoTWenImqa-C5bUpX-E6WSnfiBOWbi6GMXYaibJU | 5804 |
| psamm/commands/fluxcheck.py | sha256=qVkvLDzPKoebD5VPyLaGrbimxbJqu852i161W2pOIe0 | 7703 |
| psamm/commands/fluxcoupling.py | sha256=CKLx0ydghSbdHV3k8nsNPDEoBpvkIQE_LWUqZYqQ2_o | 6753 |
| psamm/commands/formulacheck.py | sha256=6cWnNDYX2eeWt3-8MhkMe9xTw90lER6KIf3KspusI3g | 2828 |
| psamm/commands/fva.py | sha256=XOOQ9e1N8xjgFK2ss5kH8VsD6hJJH6GxGDvWctF6eA8 | 4785 |
| psamm/commands/gapcheck.py | sha256=-VbUak1CAp8GR3c3JctcbSDjlHl91cLuFTFbes0Wh58 | 9041 |
| psamm/commands/gapfill.py | sha256=FdqMU92rHx-wmzmS1pkQaZrpkHCzbLKoQfv1sIJTncw | 6271 |
| psamm/commands/genedelete.py | sha256=1q2WXc3fDmAjZDwgOXpaz5glkE965RzeZTmWj5Pprrk | 5988 |
| psamm/commands/gimme.py | sha256=W5amp-KAMY9QU_0HpiwrI_VTnWzDuXZ_LXDizEb36Us | 12546 |
| psamm/commands/masscheck.py | sha256=UkV-JMdEqWI6psXEhkzkVm2CHflz27NIFDUC9_fcYNM | 5455 |
| psamm/commands/model_mapping.py | sha256=lNnc5-G9CC4J5XNlYftlLHg8DbpUzL6WqTd_O56RE9Y | 27088 |
| psamm/commands/primarypairs.py | sha256=de6mMgaQ0hfChr9h6HjDpY94Dm7OOkvubTkxS7IjG0c | 10601 |
| psamm/commands/psammotate.py | sha256=W43FuqGKyhxerc1FXjNqOlaq9zPLf94V10sKS2j9oHQ | 11472 |
| psamm/commands/randomsparse.py | sha256=giQVtEoLxVdsCs9vwG7y_NTpGou_OdFEdnki3oBo3yg | 5120 |
| psamm/commands/robustness.py | sha256=KcshPfrbfTUXn6wqLmPLkHtHHy0uHTV9aCQF8ECQWqE | 10520 |
| psamm/commands/sbmlexport.py | sha256=-fUpolYB3zx0dyfXUOV_Q6PnQP3cva9r1AFzr-pDZKQ | 1552 |
| psamm/commands/search.py | sha256=VBKUbTdv6vA9Do9R070R9mjH4MjhSQh1W5HvJZhtOqM | 10048 |
| psamm/commands/tableexport.py | sha256=SXgjz1aJ506mWnyzdiqZ_xoDF6mtMivx8Vl0umCiWiY | 8860 |
| psamm/commands/tmfa.py | sha256=GuQ72dt1WSqzPaIpmDcfG1nBjfS1x9EgnpWL9R-A30U | 43136 |
| psamm/commands/vis.py | sha256=wwUvmZkNWycKeagiI-jM1cWw2dZ5_Agtx6lPKv6U2T4 | 28012 |
| psamm/datasource/__init__.py | sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU | 0 |
| psamm/datasource/context.py | sha256=9uFfitiCtHXFYtP-abaL1fRO2RXe9dzqZiUvQ-ld03I | 3490 |
| psamm/datasource/entry.py | sha256=7uawb5-2KPw1lupOHbaKhhq7saERmBVjvGyP0jAy5OQ | 7044 |
| psamm/datasource/kegg.py | sha256=akwwj64GrmKD5_7kKHp-4KiLF4sgsAc59r_iB1Uw-Oc | 10873 |
| psamm/datasource/modelseed.py | sha256=yREIhiaYD-BqNUIGYnP0MHQGcVS3Gfh_B4SkJVw29wA | 3528 |
| psamm/datasource/native.py | sha256=5s5YobNgfs810IV_0mAXOjpzvVEzt1tQVIeGjdqzuI8 | 55674 |
| psamm/datasource/reaction.py | sha256=zluGyJ--sI8lITweZTaRWVZjvRfqm_UrZyL_hb4am60 | 9503 |
| psamm/datasource/sbml.py | sha256=1qniUFT-B7jkbbFqItCsx6eWFFB4K5fU1ca0y3PtK0w | 71214 |
| psamm/expression/__init__.py | sha256=E_NF3q2ldPYlhYyLpgUptpicKfTiWkkLJSO3KtnaXm8 | 755 |
| psamm/expression/affine.py | sha256=l3RVmrFD99b5tEixNUILxlQ5GaGZJO7ZlTgfoBgWU9s | 12674 |
| psamm/expression/boolean.py | sha256=B0AH_Gwhi8AJlv4PcMJiUyTGnM-dRKOYWNVC3C0jJDs | 13650 |
| psamm/external-data/biomass_compound_descriptions.tsv | sha256=lw_EOqPdLtjHiqwcpdrrG5D9HmUn2U1XgIhj9D_OJPc | 3449 |
| psamm/external-data/biomass_reaction_descriptions.tsv | sha256=fhSbuwtn1FWcYl5yRXc289_M67TxYF13GsXCvvu0a_s | 2371 |
| psamm/external-data/chebi_pH7_3_mapping.tsv | sha256=yzzVX3WsW5q0kgAzpS55oUr4Pqg2rFBm-CWpjJsm0pI | 1971845 |
| psamm/external-data/tcdb_families.tsv | sha256=elhZ_ulSyREnashOh_r-AtQmjXlatZ7iIyhs87QQgZ4 | 97826 |
| psamm/external-data/tcdb_substrates.tsv | sha256=bBNOmHOYn744YX3OffjaofZyt8_TfDja4gqfceBPl7w | 402543 |
| psamm/importers/__init__.py | sha256=GG5B1aT12WuAQKQx04fvuhGQOp5OICVKUy5mCDHytXg | 768 |
| psamm/importers/cobrajson.py | sha256=_tb5vl_aZgqzKqIKWv1pSRB4kHnHawiwFkcKygXb8tI | 6788 |
| psamm/importers/matlab.py | sha256=7IN2xwtsoQ0nGDq-0hSAU_vDQdr3HZK5AEvpSZwKIT8 | 13100 |
| psamm/importers/sbml.py | sha256=34eGNntCGzn7X8I4XSuXUI6TaDW3QS2NUhaIHwRspHg | 4224 |
| psamm/lpsolver/__init__.py | sha256=OqS-QB_339Q1zCjqz6WBpYtQfYVcMYkczwu-OOAsPLo | 755 |
| psamm/lpsolver/cplex.py | sha256=n9cywUumlVV18NhME84bVyclVF2NCT2NjU1Hin0aqM8 | 17049 |
| psamm/lpsolver/generic.py | sha256=LSvyG7dFnGny8CR2ft-gzbzdQ-0EvsXXS47KqF7QA_4 | 9262 |
| psamm/lpsolver/glpk.py | sha256=yX6dJ_oqL55LHGQ8aRHpjY_lWLQA3G0yz5Yb9Fxby1Q | 15096 |
| psamm/lpsolver/gurobi.py | sha256=pwlvzv_ot_0e3rcM0Ccq0qSaitc5MXoYK8fuICQ1evc | 13086 |
| psamm/lpsolver/lp.py | sha256=g92XG5x4euisqBd00U8u-UrbzxzhRldRndgEBbkdQWU | 30327 |
| psamm/lpsolver/qsoptex.py | sha256=2oDaKjLlPIGJLTyiRYvf8NpVn7EnyGQa7HXAb_oCBZQ | 9240 |
| psamm/tests/__init__.py | sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU | 0 |
| psamm/tests/test_balancecheck.py | sha256=OrxPYOlWPnQE_7ikCTchbwygr4GJzHsA11qJA3Yqt6k | 4944 |
| psamm/tests/test_bayesian.py | sha256=dq0_jQm3-YIyFwHtYShcxHbvyX4G5KlkYH_KHumAU84 | 16450 |
| psamm/tests/test_command.py | sha256=Q9nDHUBHm6vk8uUJ0F779m6JOAZbjqOghojIFe46A90 | 35643 |
| psamm/tests/test_database.py | sha256=wK-plTcT3Y7kEdUdIqumOYvfhvlnn_yp01-T4Lsrs4k | 7332 |
| psamm/tests/test_datasource_entry.py | sha256=7FsVhRKHECY5YY5rIX_sFpY2_85c3pSrqzypjc9MD80 | 4152 |
| psamm/tests/test_datasource_kegg.py | sha256=aKBTk8N6vMKURKFU6Dir5L6AhYknaBmcSQj_vNOHGYc | 5274 |
| psamm/tests/test_datasource_native.py | sha256=klvXlhYnwq18Qe3-CBccyA9K4jrkZccLRvmb24d0nzc | 29678 |
| psamm/tests/test_datasource_reaction.py | sha256=sA-NQUNhQw72MdmA6Y6EUT73BqJN7rfL-UA-oug_5iY | 7408 |
| psamm/tests/test_datasource_sbml.py | sha256=eS45XWZ6ABw-p5OGF2S4F4oZN4-p-3-UTQnGCrvXBCw | 47812 |
| psamm/tests/test_expression_affine.py | sha256=NzxMgYm01c-FHw_bhbicD8sbNQiWoQdXQPRodbC0RYk | 12982 |
| psamm/tests/test_expression_boolean.py | sha256=tHwB_wKn5yF7nRFGJ8IfmiWPKUIwxY0NF6z37_Ystcc | 12191 |
| psamm/tests/test_fastcore.py | sha256=dijFoTM1EvlYKOG07FFW-JmkVFjbga6dyKdjFHJyvdM | 10040 |
| psamm/tests/test_fastgapfill.py | sha256=EuKtBJKZ6gp0JPIzZSRJpfRXaw74Mgc0-NTfwPOIq0w | 2085 |
| psamm/tests/test_findprimarypairs.py | sha256=Sa_cPzYS2xPEqiePhqLK6Za0euppIJ5wDMgjJX9p_KI | 5465 |
| psamm/tests/test_fluxanalysis.py | sha256=QEZiRJDVKGr9OVqOKGQcG67SGZOKbMh4YhkkIzh89RI | 17740 |
| psamm/tests/test_fluxcoupling.py | sha256=yIU0R1iDLwwKfz35aHRjws7KWPOG9sKyKkbphNlOfQc | 5545 |
| psamm/tests/test_formula.py | sha256=-H-ry0GA_8y-EI-J2Oy-f-6L0VKLNLWecJ4j7_SCrDs | 11696 |
| psamm/tests/test_gapfill.py | sha256=9Tv6LVaPt1ISQGIXFSuX000OO5dyvze0tGJJowYClmM | 3942 |
| psamm/tests/test_gapfilling.py | sha256=ZD6TMysvkbNrwxDVu6gsWZO-EnrChaV2ni1wqsmNco0 | 5594 |
| psamm/tests/test_gimme.py | sha256=tpLzTgFloAhdQsT3La1C3Q0GXAqirk3WNr6oCLlEwYU | 9207 |
| psamm/tests/test_graph.py | sha256=8Bhg8UXONDDgsXxaBWrygHR99W_62b_88wb47yfp7-o | 66406 |
| psamm/tests/test_importer.py | sha256=LdCDtgD_r1ggxbvdbnbIXuRx0DSVQoj2N4LxQmssmI8 | 21899 |
| psamm/tests/test_lpsolver_cplex.py | sha256=ri032aqvNwsKr1OTPWuk617yKoOamh62eg8ySV6kH90 | 4857 |
| psamm/tests/test_lpsolver_generic.py | sha256=3UkkC5MtoTPdLg2aP_HnmRFNgKLaFl0RoJsfIMBTX_4 | 3829 |
| psamm/tests/test_lpsolver_lp.py | sha256=_oAX71iM6Yt-YNCTYfNdsOb_gmUpAL4QF_KZEWOqFLE | 13156 |
| psamm/tests/test_manual_curation.py | sha256=nI7LpwpgG7Kzfopt6y_OedRM_HqwDA5-K94BLNtY3Q8 | 6783 |
| psamm/tests/test_mapmaker.py | sha256=ee-67FhA8gucJoKF7plLizz1zx7sPk_fPrmxSw2_Jkc | 5500 |
| psamm/tests/test_massconsistency.py | sha256=fcSQlAQbNfpAwb5CcOVOTVMcoDwpQY3-TTlR4_iz--E | 4685 |
| psamm/tests/test_metabolicmodel.py | sha256=MqCSGaGhZ7eUqpiF-ZnlAY6bGVwQrKYxRLeixwb0CzA | 14865 |
| psamm/tests/test_model-generation.py | sha256=f3dBDebeyeSd_2QeV6ZYePnwPTBDFjwtqLBJgm7AQcE | 28850 |
| psamm/tests/test_moma.py | sha256=HVtW9y88FeXb8ebmi9VrtZ5dtHb17uqR_mdGZucoGGI | 5244 |
| psamm/tests/test_psammotate.py | sha256=PpuUBq0EyLy_OWMal6YFaf1zvuMJtf1PxDp_35nOfp0 | 8359 |
| psamm/tests/test_randomsparse.py | sha256=JNW7Ut54ptZTjq7XksBkPQHuYess8BJ24vXI8G_UXKc | 8565 |
| psamm/tests/test_reaction.py | sha256=RG4jh4VnbR5aHn9GY-p996GnCP9cbypV7t2gda9zt-c | 16965 |
| psamm/tests/test_robustness.py | sha256=4JXRXqftem59OawOThNa0OQTaOGuZiVW4EkgNOK3Wzc | 7383 |
| psamm/tests/test_tmfa.py | sha256=-HGrGJsNTextwXR2avrTtY9Kzv1y45tET5HozE23wGQ | 31769 |
| psamm/tests/test_translate_id.py | sha256=ngM4cCRQqO4sDopR6871iKt4SLl4TxWNRb5TWPneC4o | 8895 |
| psamm/tests/test_util.py | sha256=dh73btorujmVtUAGuEdPDhnDYxweAHTvVX5PGs78-yA | 2380 |
| psamm/tests/test_vis.py | sha256=uFGkVyEIR1Y2BPSXR7kpr0zggo3Qklw6O8GuobGUwJo | 58449 |
| psamm-1.2.1.dist-info/LICENSE | sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM | 35147 |
| psamm-1.2.1.dist-info/METADATA | sha256=fCFydtxA6Pq4tzOcaj4M_HBtvBCP7wyUfAB2CjYzvr4 | 3668 |
| psamm-1.2.1.dist-info/WHEEL | sha256=z9j0xAa_JmUKMpmz72K0ZGALSM_n-wQVmGbleXx2VHg | 110 |
| psamm-1.2.1.dist-info/entry_points.txt | sha256=iPH13aXDlnWBhS5ViI5fpyrfe9A1S9DWIrLsL3_3KxE | 2078 |
| psamm-1.2.1.dist-info/top_level.txt | sha256=8-0A9SWXf5KM37YGvgWoi_5PAFN1SHdyPpuDdMyF8Zk | 6 |
| psamm-1.2.1.dist-info/RECORD | — | — |
top_level.txt
psamm
entry_points.txt
psamm-generate-model = psamm.generate_model:main
psamm-import = psamm.importer:main
psamm-import-bigg = psamm.importer:main_bigg
psamm-list-lpsolvers = psamm.lpsolver.generic:list_solvers
psamm-model = psamm.command:main
psamm-sbml-model = psamm.command:main_sbml
chargecheck = psamm.commands.chargecheck:ChargeBalanceCommand
console = psamm.commands.console:ConsoleCommand
dupcheck = psamm.commands.duplicatescheck:DuplicatesCheck
excelexport = psamm.commands.excelexport:ExcelExportCommand
fastgapfill = psamm.commands.fastgapfill:FastGapFillCommand
fba = psamm.commands.fba:FluxBalanceCommand
fluxcheck = psamm.commands.fluxcheck:FluxConsistencyCommand
fluxcoupling = psamm.commands.fluxcoupling:FluxCouplingCommand
formulacheck = psamm.commands.formulacheck:FormulaBalanceCommand
fva = psamm.commands.fva:FluxVariabilityCommand
gapcheck = psamm.commands.gapcheck:GapCheckCommand
gapfill = psamm.commands.gapfill:GapFillCommand
genedelete = psamm.commands.genedelete:GeneDeletionCommand
gimme = psamm.commands.gimme:GimmeCommand
masscheck = psamm.commands.masscheck:MassConsistencyCommand
modelmapping = psamm.commands.model_mapping:ModelMappingCommand
primarypairs = psamm.commands.primarypairs:PrimaryPairsCommand
psammotate = psamm.commands.psammotate:PsammotateCommand
randomsparse = psamm.commands.randomsparse:RandomSparseNetworkCommand
robustness = psamm.commands.robustness:RobustnessCommand
sbmlexport = psamm.commands.sbmlexport:SBMLExport
search = psamm.commands.search:SearchCommand
tableexport = psamm.commands.tableexport:ExportTableCommand
tmfa = psamm.commands.tmfa:TMFACommand
vis = psamm.commands.vis:VisualizationCommand
generate-biomass = psamm.generate_biomass:main
generate-database = psamm.generate_model:main_databaseCommand
generate-transporters = psamm.generate_model:main_transporterCommand
JSON = psamm.importers.cobrajson:Importer
MATLAB = psamm.importers.matlab:Importer
SBML = psamm.importers.sbml:NonstrictImporter
SBML-strict = psamm.importers.sbml:StrictImporter