pyrodigal

View on PyPIReverse Dependencies (12)

3.3.0 pyrodigal-3.3.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
pyrodigal-3.3.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
pyrodigal-3.3.0-cp39-cp39-win_amd64.whl
pyrodigal-3.3.0-cp39-cp39-macosx_10_9_x86_64.whl
pyrodigal-3.3.0-cp39-cp39-macosx_11_0_arm64.whl
pyrodigal-3.3.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
pyrodigal-3.3.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
pyrodigal-3.3.0-cp38-cp38-win_amd64.whl
pyrodigal-3.3.0-cp38-cp38-macosx_10_9_x86_64.whl
pyrodigal-3.3.0-cp38-cp38-macosx_11_0_arm64.whl
pyrodigal-3.3.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
pyrodigal-3.3.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
pyrodigal-3.3.0-cp37-cp37m-win_amd64.whl
pyrodigal-3.3.0-cp37-cp37m-macosx_10_9_x86_64.whl
pyrodigal-3.3.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
pyrodigal-3.3.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
pyrodigal-3.3.0-cp36-cp36m-win_amd64.whl
pyrodigal-3.3.0-cp36-cp36m-macosx_10_9_x86_64.whl
pyrodigal-3.3.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
pyrodigal-3.3.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
pyrodigal-3.3.0-cp312-cp312-win_amd64.whl
pyrodigal-3.3.0-cp312-cp312-macosx_10_9_x86_64.whl
pyrodigal-3.3.0-cp312-cp312-macosx_11_0_arm64.whl
pyrodigal-3.3.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
pyrodigal-3.3.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
pyrodigal-3.3.0-cp311-cp311-win_amd64.whl
pyrodigal-3.3.0-cp311-cp311-macosx_10_9_x86_64.whl
pyrodigal-3.3.0-cp311-cp311-macosx_11_0_arm64.whl
pyrodigal-3.3.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
pyrodigal-3.3.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
pyrodigal-3.3.0-cp310-cp310-win_amd64.whl
pyrodigal-3.3.0-cp310-cp310-macosx_10_9_x86_64.whl
pyrodigal-3.3.0-cp310-cp310-macosx_11_0_arm64.whl
pyrodigal-3.3.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
pyrodigal-3.3.0-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
pyrodigal-3.3.0-pp39-pypy39_pp73-win_amd64.whl
pyrodigal-3.3.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl
pyrodigal-3.3.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
pyrodigal-3.3.0-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
pyrodigal-3.3.0-pp38-pypy38_pp73-win_amd64.whl
pyrodigal-3.3.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl
pyrodigal-3.3.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
pyrodigal-3.3.0-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
pyrodigal-3.3.0-pp37-pypy37_pp73-win_amd64.whl
pyrodigal-3.3.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl

Wheel Details

Project: pyrodigal
Version: 3.3.0
Filename: pyrodigal-3.3.0-cp310-cp310-win_amd64.whl
Download: [link]
Size: 2855161
MD5: 9db5071bb620c551a0f08f47301e48dc
SHA256: 64804b79c4ee5db6146e2e0b3d214815fd9540927d4213d5189b717505722dd5
Uploaded: 2024-01-24 19:59:10 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: pyrodigal
Version: 3.3.0
Summary: Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes.
Author: Martin Larralde
Author-Email: martin.larralde[at]embl.de
Home-Page: https://github.com/althonos/pyrodigal
Project-Url: Documentation, https://pyrodigal.readthedocs.io/en/stable/
Project-Url: Bug Tracker, https://github.com/althonos/pyrodigal/issues
Project-Url: Changelog, https://github.com/althonos/pyrodigal/blob/master/CHANGELOG.md
Project-Url: Coverage, https://codecov.io/gh/althonos/pyrodigal/
Project-Url: Builds, https://github.com/althonos/pyrodigal/actions
Project-Url: Paper, https://doi.org/10.21105/joss.04296
Project-Url: PyPI, https://pypi.org/project/pyrodigal
License: GPLv3
Keywords: bioinformatics,genome,orf,gene,prodigal
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: C
Classifier: Programming Language :: Cython
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: Implementation :: CPython
Classifier: Programming Language :: Python :: Implementation :: PyPy
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Classifier: Typing :: Typed
Platform: any
Requires-Python: >=3.6
Requires-Dist: archspec (~=0.2.0)
Requires-Dist: isal (~=1.1); extra == "isal"
Requires-Dist: lz4 (~=4.0); extra == "lz4"
Requires-Dist: zstandard (~=0.22); extra == "zst"
Provides-Extra: isal
Provides-Extra: lz4
Provides-Extra: zst
Description-Content-Type: text/markdown
License-File: COPYING
[Description omitted; length: 12648 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.41.2)
Root-Is-Purelib: false
Tag: cp310-cp310-win_amd64

RECORD

Path Digest Size
pyrodigal/__init__.py sha256=hYr4C9obSQr74y1QirCcZt5FddmoyuasuZAO_BTpdZ0 1491
pyrodigal/__main__.py sha256=Sm7wOoERtBfGI8_wxRXpx8g2ZJJAw7LosnSPhUxn4Yc 55
pyrodigal/_connection.h sha256=g-Hbr6-jjEjyaEYQf9na_ZpJ4sNl6RK3d3BSZqGYfOM 13476
pyrodigal/_connection.pxd sha256=mrViFOVU1olC5PjvFSdRj6DVsmDMrVRWShnOb-Slc-E 1888
pyrodigal/_sequence.h sha256=nCWNB2a_lUAMYfA30_GbAstXdvSHgXi7EovKZGhA0ZE 5563
pyrodigal/_sequence.pxd sha256=rPoOcfBKkbvToj8GjQUSpKHThLI2nt5iRuaWoWKVCLU 1443
pyrodigal/_version.py sha256=2_VyVJsD2VAJyFvLxoV02WgrbYyDsxItsYyFAAOqmg8 23
pyrodigal/cli.py sha256=dEzhJlkKCuNLVHjIog3eLv6vjwSFnQnk1NOXm75WNGo 9936
pyrodigal/lib.cp310-win_amd64.pyd sha256=X32XxkOjBiZm2hrrt9ehCN-aUpjLlXnNbMJBjF86nJ4 28568064
pyrodigal/lib.pxd sha256=wieI8rm96zngc1JQY2YwEn3Z7wOG9CDXlaHDNhtrjuc 11957
pyrodigal/lib.pyi sha256=e5DG3m5RWjR-nB5M6mongfGw-dQ2pyq6Iu9qjg6MI1M 13882
pyrodigal/lib.pyx sha256=DiAFDdS0TjE2j6y7gXqKHVAHQE5MMWuBwW1GYOz0Les 220755
pyrodigal/py.typed sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
pyrodigal/cpu_features/__init__.pxd sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
pyrodigal/cpu_features/aarch64.pxd sha256=NMGo6VMlIf5-43TQUPq8UKwKsKPT9hmYxFNyT4xxTEM 1287
pyrodigal/cpu_features/arm.pxd sha256=rlYOf0AcpqggmiFABIgNtGENNFfX_WdZhuiqFCYw0xw 834
pyrodigal/cpu_features/x86.pxd sha256=PRAxajv5ZVdgLdTXr7Blh9xr9ZhVwTISLciRDubR3So 521
pyrodigal/impl/__init__.pxd sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
pyrodigal/impl/avx.c sha256=zWRdUwTi4PC68wSfiZ_k-b8Vs9poXrLNgG1eUe_Lfso 947
pyrodigal/impl/avx.h sha256=ymmy5VRU1_yrXH9cxwy2zcCH8gA74fjIM-3mdDM-urQ 197
pyrodigal/impl/avx.pxd sha256=Rkf1C5IOPDzpIH34tyKQRzen-roKQFMfjdh1VIRyEyE 194
pyrodigal/impl/avx512.c sha256=xvLIoxtzrFa0Zm4ylyxtM8WXb765xczDioFCO7nmTLU 962
pyrodigal/impl/avx512.h sha256=hcrWUzo7rKBDJAc5VFW7DXRE1YTc2Wc4poSxGWJgWJY 206
pyrodigal/impl/avx512.pxd sha256=_seEJLlkCcgTTLkXvhMuoh19svmPPiTYj8l2O-1kBig 200
pyrodigal/impl/generic.c sha256=IoVW5vznoKD7uYM4d4341KT7NBUNkIjVvS4iCPU0W6c 387
pyrodigal/impl/generic.h sha256=C4Izg9aHz3_8zE6rbHR9taQ9QDwaqcRqj6kOcfUUMiI 1267
pyrodigal/impl/generic.pxd sha256=wg5yD9n7YXZtg-5AtnE9IyJ_iq8-Y2EKgCAXOA1NWOw 202
pyrodigal/impl/mmx.c sha256=dcNaglXZeTq81JE7SYd4Bet0FWBuOR28Z0qRvCCZpCo 889
pyrodigal/impl/mmx.h sha256=XUAfqVpW46xhs_g1AoBSghbBnqcOfksn3yHexkB7u70 197
pyrodigal/impl/mmx.pxd sha256=OKpoyTA0L4gcELOZPLDT69qkigFiJSzWs2PwdayWrac 194
pyrodigal/impl/neon.c sha256=JFJPax0eQmD-YBQFPhR3HtqiDTQLPT2JnD2lED7TXdg 897
pyrodigal/impl/neon.h sha256=2_luFN_tBed_EomDFEiQ_R0JjcFn7dGUXGBVhQ1DsDU 200
pyrodigal/impl/neon.pxd sha256=9e3PJm3PT8Iw4SjSK48lE3xENRNCGjW_7hp4dw4VSuU 196
pyrodigal/impl/sse.c sha256=rb8tZOrsOWI0docWuxh01cJ7B_BjegtlmhpJ6obUezA 923
pyrodigal/impl/sse.h sha256=Z3Ia5X78DebKSBInPLOY5FGxIKoFk9b8iglbzpsQjII 197
pyrodigal/impl/sse.pxd sha256=5jxtZt7C-t8gkuUfhX3vVJ3qYkFdvrtBwyASA-eBTxg 194
pyrodigal/impl/template.h sha256=oM20-YPA9TwaQNJdkK4ZhIKENf6r71GhMdYAWRiC6PE 4790
pyrodigal/prodigal/__init__.pxd sha256=frcCV1k9oG9oKj3dpUqdJg1PxRT2RSN_XKdLCPjaYaY 2
pyrodigal/prodigal/bitmap.pxd sha256=BrKYQSOMSf7KtNglZxhibGyPT1R75GzQ6ft4H8ZkurQ 360
pyrodigal/prodigal/dprog.pxd sha256=pWeW-w7jBf4ohxPzo0JO4b0-aGAQrpIkrob2JW81ro0 413
pyrodigal/prodigal/gene.pxd sha256=Yz1HQZD0qgBxxU79SQjKcszKsHGG4NoxH95QBz1PY1k 987
pyrodigal/prodigal/metagenomic.pxd sha256=3AMMDt3g6jS8Qwd8-eQEV_CgFW7BAQrnyvw2DVh5tRc 645
pyrodigal/prodigal/node.h sha256=DY_VvFCOGuSXje_QrN-vWWM5Rtipao6GlaTDvsTWLDc 5692
pyrodigal/prodigal/node.pxd sha256=cgJOkCQw1GDNtZrZMBinBBAAiMsaQ7aY4zg7NL2Y_P0 3176
pyrodigal/prodigal/sequence.pxd sha256=CfuSXsHGh--_q7U1p10iY2y8nXmMpnsZOApyO2TiXMY 1725
pyrodigal/prodigal/training.pxd sha256=ToXApiaugsSLKAJcoCAPc7IDihu1pWUKAqo4OSLIIAw 342
pyrodigal/tests/__init__.py sha256=OkCvEvGobytTi1rpCbzhoGOCUUzV1voourRec_zIYHo 825
pyrodigal/tests/fasta.py sha256=v7uJk9geJd24Aq7wxeTHPCeimY9XqDVCcW8DL0Aq4Q4 2764
pyrodigal/tests/requirements.txt sha256=OLFASSvnf_DRf_-tpWbweEtYGO8PkwG5VWu2K5rENl0 64
pyrodigal/tests/test_connection_scorer.py sha256=4B1-sXBg72W1JrAR_uv-gL1ZeOEpGHzPS6oRv4NVg1U 3992
pyrodigal/tests/test_doctest.py sha256=bZfpduNdhh7_76UKWkimN9rFVwix62cxrgKL1jbI9Ls 3174
pyrodigal/tests/test_gene.py sha256=izo1vhPlnwu26l7zxWKJ-yo84eFB2hy7MRaql-4nyOc 1856
pyrodigal/tests/test_gene_finder.py sha256=xLg5b9Zdam_qsQozHZINjVMMw-1tlh9o0ewqHw6j1_s 18998
pyrodigal/tests/test_genes.py sha256=QlnhZdn5iusUpx3wxEnt2LUKI70jRB0ZiflZUZN76BE 8089
pyrodigal/tests/test_mask.py sha256=Ypw8UMbqPgMZdrkwDYJioJLCcDZLYgg8c0ynnhaduFQ 701
pyrodigal/tests/test_nodes.py sha256=y_QLPutV8Ctfn8P-k4RemHdSCxSxwjR8YiQzZG_nZIQ 4255
pyrodigal/tests/test_sequence.py sha256=nPq9lsIlUhAUXdP6gYvkHs4vmCJFN1lnKRvezBdwCPU 3077
pyrodigal/tests/test_training_info.py sha256=2L3JR6_O2M7enSwAmy4VqsFZ7Wfp_mbd6kQZSZgGuOk 2982
pyrodigal/tests/data/GCF_001457455.1_NCTC11397_genomic.fna.gz sha256=6fiMwaXB8OEPNy35GFLkRjDL6x1CSjRWbtFZ5elIULM 737378
pyrodigal/tests/data/GCF_001457455.1_NCTC11397_genomic.tinf_closed.bin sha256=uxRFx7i2DVrnhrCffZnms2dFCs8xnyk_mZnlPSd6-kk 558392
pyrodigal/tests/data/KK037166.fna.gz sha256=yUc8xB-3I6i5tZU_TCNluPntsXEQnM7DsA_V3p0WTlE 6264
pyrodigal/tests/data/KK037166.meta+mask.fna.gz sha256=udhrkz-wxHblwdgTuQDlhaPSafenk0TCRShQIZsPOw4 5134
pyrodigal/tests/data/KK037166.meta.faa.gz sha256=VwDeO6fVlwd-B1eV1_cJbDebEAciGlPRXhNkvlbKFX8 3699
pyrodigal/tests/data/KK037166.meta.fna.gz sha256=zEHNZyOpip7kleiavc0Kd4tBV2ksGX4N57TvWdlB_3Y 5406
pyrodigal/tests/data/KK037166.single.faa.gz sha256=wkxO-cum2XjS0UBVaTIwWu3Bbp_RcN_r-hYp-sf4-5U 3994
pyrodigal/tests/data/KK037166.single.fna.gz sha256=GXQKGXoTqITzsodiGNyUeR-ldTfEnHjBbbEMoObWULs 5876
pyrodigal/tests/data/MIIJ01000039.faa.gz sha256=RTFfRcNQf2B6c7TxWscJdm3ReODWLnovC0nDKpHvw-M 89413
pyrodigal/tests/data/MIIJ01000039.fna.gz sha256=7HULsBM5cNvdcmP2PXLCHuXZZO1zNiVvvJw6pIpT4g8 139037
pyrodigal/tests/data/MIIJ01000039.meta+mask.faa.gz sha256=BaTem2OGy6eqgCdHl0UsVDOm91etoQyV2wdCPGMHmdo 87775
pyrodigal/tests/data/MIIJ01000039.meta+mask.fna.gz sha256=i8DGnOAxvfLpYwu18jXYnQ2ghbwNyDyosTrAm6dLu9w 129127
pyrodigal/tests/data/MIIJ01000039.meta.faa.gz sha256=HGIBQsfny3nuYyBwwuodrMzOTM4RSQWsXFjBi3qkbRA 89491
pyrodigal/tests/data/MIIJ01000039.meta.fna.gz sha256=dcCHZGLplZAG9G2388BCUeZjWYwO0ZJD8R7nWYe1McI 132891
pyrodigal/tests/data/MIIJ01000039.single.faa.gz sha256=RvC81QeFcmVzp3p5I7VXgbLsJV1I9wo5sw5WeLEDvDQ 90959
pyrodigal/tests/data/MIIJ01000039.single.fna.gz sha256=MmKapPlMAo7fHtSpldFKuX48H8Brc_v-CBqVjcKL3Hw 134986
pyrodigal/tests/data/SRR492066.fna.gz sha256=SE5Qzz8O0KPV6jXiJK0bX2Bgwfux40I0qumWPkBtOLc 23514
pyrodigal/tests/data/SRR492066.meta.faa.gz sha256=6CUk7HXIpFplaed57tqEWrGUEEUloAyIbXzzX3SBa5c 15876
pyrodigal/tests/data/SRR492066.meta.fna.gz sha256=rsbS5ud0qwMwp89bpu5xrey72nRd8NnnVdbMzjQoHzo 22885
pyrodigal/tests/data/SRR492066.meta.gff sha256=URLBis06Urt0Pz3B9PFMP4nrmy4lmjz4BgSXbwBaTCQ 17744
pyrodigal/tests/data/SRR492066.meta.tsv sha256=P7S9BDyfVrG3rmedPygSMl6Nc1nJll-tUJ-gDvikPns 172882
pyrodigal/tests/data/SRR492066.single.faa.gz sha256=l7iBDEhxv5UJ2kSMiwJmWTly-X4YxmQX84LW66OMjPw 16249
pyrodigal/tests/data/SRR492066.single.fna.gz sha256=S3CcXCnMOoD7_F_N4eGfJYjvwFbH5Lt1c0XBaPwNv_M 23382
pyrodigal/tests/data/SRR492066.training.bin.gz sha256=dO0pIB5N5vxk6za6JH4l50mb54tACaVNyz-a_03VBjk 13099
pyrodigal/tests/data/__init__.py sha256=JnSWGIo3ThkKlbZLTFxP-fVBxSTN4Yw5YAzQqa_IpXM 705
pyrodigal-3.3.0.dist-info/COPYING sha256=lE9DJUN_D0B-V6xgf_SX0xjldzX1TGs1xKyMvBdnWCM 35822
pyrodigal-3.3.0.dist-info/METADATA sha256=1JG4pwNHhe7HkqpBRVDAsyb1vl8Bfta0fFh5ehMeS6Y 15133
pyrodigal-3.3.0.dist-info/WHEEL sha256=yrvteVAZzxQvtDnzdCRh4dP01sPIxYhLXIXplC7o50E 102
pyrodigal-3.3.0.dist-info/entry_points.txt sha256=zE76M0Tw4wwmFepWsQdFT7bgqb_S4_pv0Qn46HSO5-4 49
pyrodigal-3.3.0.dist-info/top_level.txt sha256=uha8DLotKH02piJwtNyIssael00b_HwJSrhHxsl2K84 10
pyrodigal-3.3.0.dist-info/RECORD

top_level.txt

pyrodigal

entry_points.txt

pyrodigal = pyrodigal.cli:main