readfish

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2024.2.0 readfish-2024.2.0-py3-none-any.whl

Wheel Details

Project: readfish
Version: 2024.2.0
Filename: readfish-2024.2.0-py3-none-any.whl
Download: [link]
Size: 111294
MD5: c3d29e593cfc0fab441f7b59251b3aea
SHA256: b7bed81503ea34ed898b1249c14b6d6ac22f59bc63d1b0ea131ce5d5c1af185d
Uploaded: 2024-05-09 14:45:37 +0000

dist-info

METADATA

Metadata-Version: 2.3
Name: readfish
Version: 2024.2.0
Summary: ONT adaptive sampling
Author: Alexander Payne
Author-Email: Rory Munro <rory.munro[at]nottingham.ac.uk>, Matt Loose <matt.loose[at]nottingham.ac.uk>
Project-Url: Documentation, https://looselab.github.io/readfish
Project-Url: Bug Tracker, https://github.com/LooseLab/readfish/issues
Project-Url: Source Code, https://github.com/LooseLab/readfish
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: Implementation :: CPython
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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Provides-Extra: tests
Provides-Extra: tests-mappy
Description-Content-Type: text/markdown
License-Expression: MIT
License-File: LICENSE
[Description omitted; length: 71989 characters]

WHEEL

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Generator: hatchling 1.24.2
Root-Is-Purelib: true
Tag: py3-none-any

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entry_points.txt

readfish = readfish._cli_base:main