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snpio

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1.0.5.2 snpio-1.0.5.2-py3-none-any.whl

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Project: snpio
Version: 1.0.5.2
Filename: snpio-1.0.5.2-py3-none-any.whl
Download: [link]
Size: 102694
MD5: 9d11063ec7fbdc9a51c5166cae0025b1
SHA256: 05450af96d42e2309bec087e9f7ddcbd11f49c446be63707e147ec6ad1012ebf
Uploaded: 2023-09-17 09:53:04 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: snpio
Version: 1.0.5.2
Summary: Reads and writes VCF, PHYLIP, and STRUCTURE files and performs data filtering on the alignment.
Author: Bradley T. Martin and Tyler K. Chafin
Author-Email: evobio721[at]gmail.com
Home-Page: https://github.com/btmartin721/SNPio
Project-Url: Source Code, https://github.com/btmartin721/SNPio
Project-Url: Bug Tracker, https://github.com/btmartin721/SNPio/issues
License: GPL3
Keywords: genomics,bioinformatics,population genetics,SNP,VCF,PHYLIP,STRUCTURE,missing data,filtering,MAF,biallelic
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Platform: Any
Requires-Python: >=3.8
Requires-Dist: biopython
Requires-Dist: bokeh
Requires-Dist: ete3
Requires-Dist: holoviews
Requires-Dist: kneed
Requires-Dist: matplotlib
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: panel
Requires-Dist: plotly
Requires-Dist: requests
Requires-Dist: versioned-hdf5
Requires-Dist: pysam
Requires-Dist: scikit-learn
Requires-Dist: scipy
Requires-Dist: seaborn
Requires-Dist: toytree
Requires-Dist: kaleido
Requires-Dist: psutil
Requires-Dist: memory-profiler; extra == "dev"
Requires-Dist: sphinx (<7); extra == "docs"
Requires-Dist: sphinx-rtd-theme; extra == "docs"
Requires-Dist: sphinx-autodoc-typehints; extra == "docs"
Requires-Dist: scikit-learn-intelex; extra == "intel"
Provides-Extra: dev
Provides-Extra: docs
Provides-Extra: intel
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 12801 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.41.2)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
snpio/__init__.py sha256=Qfmvtk1E8yukBHuhszITuHhRuAvtYMuzgG3yTU0X0Oc 152
snpio/filtering/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
snpio/filtering/nremover2.py sha256=L7AmYHiG3gKts4P8YW9lj4gj5dUjViMLtcC6kNXyIM4 66620
snpio/plotting/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
snpio/plotting/plotting.py sha256=j8MK9JiF618Q0QWtFIHPBTvCwDINKoQGsRaXcbRBEWg 79887
snpio/popgenstats/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
snpio/popgenstats/pop_gen_statistics.py sha256=ek9UWUP4gho2POc4n5_T-vTgooXbwk5XUgUXd3Z207Y 26425
snpio/read_input/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
snpio/read_input/genotype_data.py sha256=P4mXjQOTR0OUP3ov6CmjKplEGt9LKE5ckkipC7HAmgY 150001
snpio/read_input/popmap_file.py sha256=mf_6i6tO42Eao10SLmH4aoujmLsYe6xzk6etGm-b880 11342
snpio/utils/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
snpio/utils/custom_exceptions.py sha256=OVIErWFTwYSd3zgiY29yYrqda8fueSSpIjBlvwRVkw0 1231
snpio/utils/misc.py sha256=J1p8cU1i5EgC-CVTJaKgXO987EpWyzOhhT-1MYohdwE 25828
snpio/utils/sequence_tools.py sha256=1JUzwia3_kT807RyUg1r7hgOzIg4zt6--Wm07zccjGk 22414
tests/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
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tests/filter_packages.py sha256=RDkT6mKNlPkMqWn-nHOGwJcTGAJB3vNtgyZTWQuzeUU 498
tests/get_docstrings.py sha256=yrTfbIKFOpkaWVGLco95C0IEC9TFYoZjoF5CTsm31CM 538
tests/get_pkg_resources.py sha256=0tTKY-VoHkBrKhAbYWtyqwi6uuDzOJJikXjlA1ODE3g 462
tests/modulefinder.py sha256=h507eVTcV5a5z7Ctpc8AQNEzkp6KduwUK82aHfou6qo 883
tests/test.py sha256=egq6ZvHiObxj26mrpOqg0alTVfK1dV5qDiL2tatBUSE 3959
snpio-1.0.5.2.dist-info/LICENSE sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY 35149
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snpio-1.0.5.2.dist-info/entry_points.txt sha256=Gq6S6Wlm1VskeyGRpG_3istNFQUL76XGMPJYO8-8Ruw 44
snpio-1.0.5.2.dist-info/top_level.txt sha256=mAoS5UOSw_lB8bEFMucF2w_VbbhJMeBBmocCd3aHYF0 12
snpio-1.0.5.2.dist-info/RECORD — —

top_level.txt

snpio
tests

entry_points.txt

[console_scripts]
snpio = run_snpio.py:main