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stemia

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0.7.5 stemia-0.7.5-py3-none-any.whl

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Project: stemia
Version: 0.7.5
Filename: stemia-0.7.5-py3-none-any.whl
Download: [link]
Size: 52645
MD5: 0a469f1123fc28cd750b724536bfddc9
SHA256: 1fdc64765dd674f4bc1e254d36185ef094a3be53e6d6771bfb1a5fd2073417bc
Uploaded: 2024-01-16 16:43:40 +0000

dist-info

METADATA · WHEEL · RECORD · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: stemia
Version: 0.7.5
Summary: A personal collection of (sometimes...) useful scripts and tools for cryoem/cryoet.
Author-Email: Lorenzo Gaifas <brisvag[at]gmail.com>
Project-Url: homepage, https://github.com/brisvag/stemia
Project-Url: repository, https://github.com/brisvag/stemia
License: GPLv3
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Requires-Python: >=3.8
Requires-Dist: click
Requires-Dist: mrcfile
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: rich
Requires-Dist: scipy
Requires-Dist: sh
Requires-Dist: starfile; extra == "align-filament-particles"
Requires-Dist: stemia[cryosparc]; extra == "all"
Requires-Dist: stemia[image]; extra == "all"
Requires-Dist: stemia[relion]; extra == "all"
Requires-Dist: stemia[warp]; extra == "all"
Requires-Dist: scikit-image; extra == "center-filament"
Requires-Dist: edt; extra == "classify-densities"
Requires-Dist: matplotlib; extra == "classify-densities"
Requires-Dist: plotly; extra == "classify-densities"
Requires-Dist: edt; extra == "create-mask"
Requires-Dist: stemia[csplot]; extra == "cryosparc"
Requires-Dist: stemia[fix-filament-ids]; extra == "cryosparc"
Requires-Dist: stemia[generate-tilt-angles]; extra == "cryosparc"
Requires-Dist: ipython; extra == "csplot"
Requires-Dist: magicgui; extra == "csplot"
Requires-Dist: plotly; extra == "csplot"
Requires-Dist: black; extra == "dev"
Requires-Dist: ipython; extra == "dev"
Requires-Dist: pdbpp; extra == "dev"
Requires-Dist: pre-commit; extra == "dev"
Requires-Dist: rich; extra == "dev"
Requires-Dist: ruff; extra == "dev"
Requires-Dist: stemia[all]; extra == "dev"
Requires-Dist: cryohub; extra == "extract-z-snapshots"
Requires-Dist: cryotypes; extra == "extract-z-snapshots"
Requires-Dist: napari[pyqt5]; extra == "extract-z-snapshots"
Requires-Dist: starfile; extra == "fix-filament-ids"
Requires-Dist: mdocfile; extra == "fix-mdoc"
Requires-Dist: eulerangles; extra == "flip-z"
Requires-Dist: starfile; extra == "flip-z"
Requires-Dist: starfile; extra == "generate-tilt-angles"
Requires-Dist: stemia[center-filament]; extra == "image"
Requires-Dist: stemia[classify-densities]; extra == "image"
Requires-Dist: stemia[create-mask]; extra == "image"
Requires-Dist: stemia[extract-z-snapshots]; extra == "image"
Requires-Dist: stemia[flip-z]; extra == "image"
Requires-Dist: starfile; extra == "merge-star"
Requires-Dist: mdocfile; extra == "offset-angle"
Requires-Dist: starfile; extra == "prepare-isonet"
Requires-Dist: stemia[align-filament-particles]; extra == "relion"
Requires-Dist: mdocfile; extra == "spoof-mdoc"
Requires-Dist: tabulate; extra == "summarize"
Requires-Dist: stemia[fix-mdoc]; extra == "warp"
Requires-Dist: stemia[merge-star]; extra == "warp"
Requires-Dist: stemia[offset-angle]; extra == "warp"
Requires-Dist: stemia[prepare-isonet]; extra == "warp"
Requires-Dist: stemia[spoof-mdoc]; extra == "warp"
Requires-Dist: stemia[summarize]; extra == "warp"
Provides-Extra: align-filament-particles
Provides-Extra: all
Provides-Extra: center-filament
Provides-Extra: classify-densities
Provides-Extra: create-mask
Provides-Extra: cryosparc
Provides-Extra: csplot
Provides-Extra: dev
Provides-Extra: extract-z-snapshots
Provides-Extra: fix-filament-ids
Provides-Extra: fix-mdoc
Provides-Extra: flip-z
Provides-Extra: generate-tilt-angles
Provides-Extra: image
Provides-Extra: merge-star
Provides-Extra: offset-angle
Provides-Extra: prepare-isonet
Provides-Extra: relion
Provides-Extra: spoof-mdoc
Provides-Extra: summarize
Provides-Extra: warp
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 14825 characters]

WHEEL

Wheel-Version: 1.0
Generator: hatchling 1.21.0
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
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stemia/aretomo/__init__.py sha256=x5U3qfLkwji2oAh_Z_gBzUIYjTIWWPO1aZlHGHb_oSc 57
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stemia/aretomo/batch.sh sha256=5xe1LYJyHlM-2aPyR3WRD6aurOV29Li4vK-PoazPZ2Q 343
stemia/cryosparc/__init__.py sha256=DQosZnBmmkNlMGYayw9F9YUHCpf9_5bat8UUpCQnimk 59
stemia/cryosparc/fix_filament_ids.py sha256=q5hf8K7DJOWn-ToJ1_xkT2dEjmqASS3FTNqW5rCjjDU 1237
stemia/cryosparc/generate_tilt_angles.py sha256=uMAPSHJYEXC3UkVsAPEtHzlEd5sf51wq3NQZniW8wiI 2168
stemia/cryosparc/merge_defects_gainref.py sha256=9DBP6ZFcCMA7tQXY8hiSv7pPRtnVRLWZKfBPiq0Bp98 1677
stemia/cryosparc/csplot/__init__.py sha256=78xQXAVUXVZWoJ_aEwZM8TtTrOWtH8e1q2umnxV6hoA 41
stemia/cryosparc/csplot/main.py sha256=2ZYcn8GMNzOKlX5Foh8zJaKqIKmw8JhLtCSK8jz-CjE 1692
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stemia/image/extract_z_snapshots.py sha256=e1VAjYJLUCpofB9wWermLTgMATyVdG82wjzIeWJAiik 2910
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stemia/image/rescale.py sha256=IMIFYdiT4qrgburBxgu9F-ZCnqcFgXjoFyuFMrc8yuw 1340
stemia/image/center_filament/__init__.py sha256=8YoCtfNNPwsNJNNEqShHIbTVBPE52VDQ1jEMiDPm5kc 52
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stemia/relion/__init__.py sha256=lwfMFUu7FIDYO33xT8g-Te2ZccuzJ0NemWQS1aVRb-I 56
stemia/relion/align_filament_particles.py sha256=DEkrmqssPJeXsz8TYv7aXDOpIAYE26NGczePGFHm6C8 3893
stemia/relion/edit_star.py sha256=Y52I4srLHZxT5E1IUCwUp7-lp3xTjJL1C1GTrY4i4FI 2049
stemia/utils/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
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stemia/utils/image_processing.py sha256=dQkv_txGxtBL3XXSm9HTKP-Mf-_Mlmw8itVZu6--DyM 4613
stemia/utils/io_.py sha256=Gn0JZkBvlcfD4wCbXfIVoTsPrhsfPQImOfJYoWZjkwQ 2837
stemia/warp/__init__.py sha256=fV9NLxvv8N3k0tqsIvDCwRlyiN1hlU_VvRprkVI1dFc 54
stemia/warp/fix_mdoc.py sha256=IzrWykUYPB9Uw_Pu9B5nPeSxkF7vdRI_qGAeA4oLDA8 2444
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stemia/warp/parse_xml.py sha256=sWCYM-QyZyhiNquENTT-iJYEzHbQrr3jBWARWmuKzes 312
stemia/warp/prepare_isonet.py sha256=eH3nvamP1Pyqk6bpZ_rZ4pAhpzdV7R0GDeaonm73YRU 1083
stemia/warp/preprocess_serialem.sh sha256=ENroa91-M-S9og2XtoyDQSL_FceZxdzX5KVGhMp-fJg 1252
stemia/warp/spoof_mdoc.py sha256=RnhJkM_S3OnnyzslbHVr-1s1HI7X8IaQTOE_RCWulLY 1940
stemia/warp/summarize.py sha256=b53YFAJQ7LWD4gBlI_eKxKq5MLjr-m7vkrBMJ1LqrLs 2023
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stemia-0.7.5.dist-info/entry_points.txt sha256=JrJR0WtiNgrDWHDiEV5Wqn9I-5yMeHgolHICHBnGiPc 38
stemia-0.7.5.dist-info/licenses/LICENSE sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY 35149
stemia-0.7.5.dist-info/RECORD — —

entry_points.txt

[console_scripts]
stemia = stemia:cli