cooler

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0.9.3 cooler-0.9.3-py3-none-any.whl

Wheel Details

Project: cooler
Version: 0.9.3
Filename: cooler-0.9.3-py3-none-any.whl
Download: [link]
Size: 103746
MD5: 7bfb402aec328852d7a219f88a6ed54e
SHA256: a52584e8df0f2ff7187f03cfee2dc4d94d85c5c17dcd90c91c946b7c7532441c
Uploaded: 2023-09-11 22:57:22 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: cooler
Version: 0.9.3
Summary: Sparse binary format for genomic interaction matrices.
Author-Email: Nezar Abdennur <nabdennur[at]gmail.com>
Maintainer-Email: Open2C <open.chromosome.collective[at]gmail.com>
Project-Url: homepage, https://open2c.github.io/cooler
Project-Url: documentation, https://cooler.readthedocs.io
Project-Url: repository, https://github.com/open2c/cooler
Project-Url: changelog, https://github.com/open2c/cooler/blob/master/CHANGES.md
License: BSD-3-Clause
Keywords: Hi-C,bioinformatics,contact,format,genomics,hdf5,matrix,sparse
Classifier: Development Status :: 4 - Beta
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
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Provides-Extra: complete
Provides-Extra: dev
Provides-Extra: docs
Provides-Extra: test
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 5779 characters]

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entry_points.txt

cooler = cooler.cli:cli