covigator

View on PyPIReverse Dependencies (0)

2.2.3 covigator-2.2.3-py3-none-any.whl

Wheel Details

Project: covigator
Version: 2.2.3
Filename: covigator-2.2.3-py3-none-any.whl
Download: [link]
Size: 3267778
MD5: dc6dabf330f1e31ecfb6aae59bf6ad77
SHA256: ee091c6d67b2074aa98eb44b5c02070574a0d6880a50e9ec85de53524ab85ee6
Uploaded: 2024-01-04 14:39:14 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: covigator
Version: 2.2.3
Author: TRON - Translational Oncology at the University Medical Center of the Johannes Gutenberg University Mainz - Computational Medicine group
Author-Email: patrick.sorn[at]tron-mainz.de
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Healthcare Industry
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 3.8
Requires-Dist: numpy (==1.22.0)
Requires-Dist: pandas (==1.3.3)
Requires-Dist: requests (==2.31.0)
Requires-Dist: sqlalchemy (==1.3.20)
Requires-Dist: dask[complete] (==2022.9.2)
Requires-Dist: dask-jobqueue (==0.8.1)
Requires-Dist: distributed (==2022.9.2)
Requires-Dist: Werkzeug (==2.3.8)
Requires-Dist: cytoolz (==0.11.0)
Requires-Dist: logzero (==1.6.3)
Requires-Dist: psycopg2-binary (==2.8.6)
Requires-Dist: plotly (==5.18.0)
Requires-Dist: dash (==2.14.1)
Requires-Dist: dash-bootstrap-components (==1.5.0)
Requires-Dist: cyvcf2 (==0.30.4)
Requires-Dist: pycountry (==20.7.3)
Requires-Dist: pycountry-convert (==0.7.2)
Requires-Dist: tenacity (==6.3.1)
Requires-Dist: dash-bio (==0.6.1)
Requires-Dist: faker (==8.8.0)
Requires-Dist: colorlover (==0.3.0)
Requires-Dist: biopython (==1.76)
Requires-Dist: lz4 (==3.1.3)
Requires-Dist: scikit-bio (==0.5.6)
Requires-Dist: ipywidgets (==7.6.3)
Requires-Dist: ipython (==8.12)
Requires-Dist: parameterized (==0.8.1)
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 5461 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.42.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
covigator/__init__.py sha256=5vJQqqLfQMRcJUU2gZEQ7utwnu5TvLpim10Mqmmzb0Q 1440
covigator/command_line.py sha256=XQFHT8T0pQcG_FgEJlDGhDHbF7zkC_4QZNt2b0YFht8 7024
covigator/configuration.py sha256=e94-6ckTWH8Z-sUsuidN5ME9Do0C1z0D0uTbyKKxv2o 8414
covigator/exceptions.py sha256=WV-3GjS8XGwge3jhZRlc5GBbJUJ9r2PCnxLVCtFvhss 1738
covigator/wsgi.py sha256=Ip9umg7vbFpMRIz9ji7-ukVDXVTyM8PiiecYnwBiQLc 386
covigator/accessor/__init__.py sha256=sTygjLIdesomOFw3h0dxPA1dN0aoxPI78_7IHRlISM4 60
covigator/accessor/abstract_accessor.py sha256=VnyNmoXwdK_LfECYAD3-wUXt93aVOhRJXS7z_vlq8Nk 1882
covigator/accessor/covid19_portal_accessor.py sha256=vHBLwTkikgyjiZkfklRftwhsueErPkPMzMcJSNwTvS0 17131
covigator/accessor/ena_accessor.py sha256=NwVCI6JD9mpTtCCx72mvQ1RJgKVacPc94ga_-ecBzFs 10812
covigator/dashboard/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
covigator/dashboard/dashboard.py sha256=8CZwSDRQI4tVBXG16CDa_3hvmErQbpKkp3jNR7tzdRc 16818
covigator/dashboard/assets/2021_twitter_logo_blue.png sha256=JZbY9lmAvACnqfKX3pcTk16mPZj3npiP9fisWc_BvE4 19683
covigator/dashboard/assets/CV19DP_logo_oneliner2.svg sha256=sd0wsqHpobe8GNB0G1KOtxQSwTkZzpwAF6WQB4XQFxU 40495
covigator/dashboard/assets/CoVigator_ico.png sha256=jUtqcchoC5VS81Z4FyspkPF32ehkxOv-GNerezbC3EI 31369
covigator/dashboard/assets/CoVigator_logo.png sha256=6CbcPy71yYVKxaCzk2lFep2vK17c2XwWlHpUvfbRAEA 106477
covigator/dashboard/assets/CoVigator_logo_ENA.png sha256=SZXSRwaNrqmV5RdbvvUxBgzziRxCP3I3Vnk3kHBsEp0 1013129
covigator/dashboard/assets/CoVigator_logo_txt.png sha256=hTFrrjvKVKHD24-rbFNu8IRo1VcRCDVWdxl0pVH4D-s 43957
covigator/dashboard/assets/CoVigator_logo_txt_nobg.png sha256=VqnZ9Bdf8xIOpSjUSvIBlqRtRT-VRjf6nG_blQYX1qQ 46264
covigator/dashboard/assets/CoVigator_logo_txt_reg.png sha256=4eZo45gEYB9cpvqxNw-CGRiZH-ZMoXv4A_gXWsT9KAw 47880
covigator/dashboard/assets/CoVigator_logo_txt_reg_no_bg.png sha256=in6gW0N1DZZ405JA6mCXtC-ZhtDjToiCcGYnK2Nq5LU 55075
covigator/dashboard/assets/CoVigator_logo_txt_reg_no_bg_covid19_portal.png sha256=LR91L1Z-JWky_MX_gSUYvynkmdMkPsXO6ja8OWRLDrk 75513
covigator/dashboard/assets/CoVigator_logo_txt_reg_no_bg_covid19_portal.xcf sha256=-zJ0p8QTyQaQaY3qeg2sOzO8qIaceF5Xa0e7MbYv8tY 189872
covigator/dashboard/assets/CoVigator_logo_txt_reg_no_bg_ena.xcf sha256=PmlB9WrJBgOyX940BNgryPK1lE-o9COBrYkEj8fQuN8 165548
covigator/dashboard/assets/ENA_logo_2021.png sha256=QadPHf2_WP0ca44UcFNnrf4m2xdH2K3iKp4OKDG-uMM 49347
covigator/dashboard/assets/ENA_logo_2021_wo_text.png sha256=cS8135MLUrCXNMkdg8mU-1cSW1VreFh-SBZ7FHA51Ow 40828
covigator/dashboard/assets/favicon.ico sha256=jUtqcchoC5VS81Z4FyspkPF32ehkxOv-GNerezbC3EI 31369
covigator/dashboard/assets/favicon___.ico sha256=wT_7JeGkkgGf1j3nLB7CumFIOBb7LOSzrqtH5RDAai8 23354
covigator/dashboard/assets/resizing_script.js sha256=8hDqmVYzGIlSQoNOfhBY_2iap-talGM_8dGgjKprpwI 326
covigator/dashboard/assets/s1.css sha256=Gm3sRLN8KIpKm51sgxyBcTy6x5yhX6bdQ1Hhw7_5BSA 13254
covigator/dashboard/assets/styles.css sha256=vrSYAFEYgl1LNUhqNopWmQ7EawqLwczkSutKHZTj4ak 1928
covigator/dashboard/assets/tron_logo.png sha256=UvPBvHaKhkuZRJSuonDL2XwPbFAmG_u2Oeu-70KjmGo 12110
covigator/dashboard/assets/tron_logo_no_bg.png sha256=yNdKLPzfucXSf_ngc7U_z_pDRnbcpCL0i0GDGRMOKgw 14215
covigator/dashboard/assets/tron_logo_without_text.png sha256=sRwTRqb11mEQyoyyD7N7DQz_5GQRN9tmV5LxOlFTVi8 61168
covigator/dashboard/assets/wordcloud.png sha256=zwqxqtLqEWhwsYYQNsYFk_-hqSJ6uKqIP_oY8fsHDXA 344224
covigator/dashboard/figures/__init__.py sha256=Phkig71pGDb11ExtFrkG_3hhUWd96FoCkBlrI0bCqkg 278
covigator/dashboard/figures/figures.py sha256=DQecHzEAQ7rqHBGjmiwAbHcRVe3C45VR1Ckv8pHKujU 741
covigator/dashboard/figures/intrahost_mutations.py sha256=3Z6GJmzkA9TIXOTJk4sHEWRhDb0ko1p0Op38KoNEB0k 16413
covigator/dashboard/figures/lineages.py sha256=HoI1NGLRB5Cf0Jq1u199ye9gyqPFtcpwuWRJBb3nFA8 10781
covigator/dashboard/figures/mutation_stats.py sha256=7a_sPyInCXcMwNA2OwbNXZbIX2HaeULWEsCTXUVGNbM 7227
covigator/dashboard/figures/recurrent_mutations.py sha256=2TaiGuHvNHAmRm2fBx3CBq8xCO7l09CVNlXro6BHn0k 42807
covigator/dashboard/figures/samples.py sha256=P18dh5q1gcZzLAiTlqqilJjWcIPYyTjwF7Jjr4EQBqY 4599
covigator/dashboard/tabs/__init__.py sha256=C3of_o4qdGCJsfiArMV8aLTDmtuXXm-SugDRhMf-B_0 725
covigator/dashboard/tabs/acknowledgements.py sha256=0RDScgxS1mBVCcDiDIg6ICz8avWIFZNYBH37azB4WaM 6156
covigator/dashboard/tabs/dataset_covid19_portal.py sha256=ahK8BwkcVZkypRulqg-bhEzOvSoOxVS8ROUZy0he0ug 7201
covigator/dashboard/tabs/dataset_ena.py sha256=xbReyETddFAq1i9oWjUu9G7VggmcMl8GupMT_nGP9ZU 13437
covigator/dashboard/tabs/download.py sha256=M_cIaaInxB-EW6m7TCuWsh7NZrEhKr2O4NEkq0KHhrY 3202
covigator/dashboard/tabs/footer.py sha256=BQvgr1zkGVPPU0Ziaf86MOBYA3IcJQ6xtK3MrsLnLYA 3036
covigator/dashboard/tabs/intrahost_mutations.py sha256=kILmfPgTpperaGptvjCpUuUPwSkpvvHATr3hszlA54w 11169
covigator/dashboard/tabs/lineages.py sha256=IERSFokbSe1bwtHyh_XfAyB7eltVwYxYKT8LHGjRBuY 10688
covigator/dashboard/tabs/mutation_stats.py sha256=ehb5T9fJ_jJoKwTwLxLp9qTpDG0T8i_HtudrY1j_404 6845
covigator/dashboard/tabs/overview.py sha256=2Y1Pivf7T3OPRERFQl3eT39OnGt9Q5otMDZy-7ICoew 13758
covigator/dashboard/tabs/recurrent_mutations.py sha256=bltxcJNQFQZva-10Uekr6WcrwkFKWGAPfM1V7O73_PI 15115
covigator/dashboard/tabs/samples.py sha256=x1u9ZDb2tHfR2lURRlsg59zAe4aCHPKipxsql-AOQxo 7595
covigator/database/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
covigator/database/database.py sha256=w1CeAfw-J5qmk3XmzN_eIQZS6PtYLUwHzuyzNH3OqjY 4035
covigator/database/model.py sha256=8MhdOnrXzw4GaN8GDDzjf58yVJmqxgwfswp2P_3g3s4 44830
covigator/database/queries.py sha256=kVbBBsv5_VN7uk95sLXkxm67LM3xbUefcHJqXvih_gM 42940
covigator/misc/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
covigator/misc/backoff_retrier.py sha256=uyVOrci0cJ9KlcTfv1PI0OI71Yo_BTOjTjJOYv76u_M 2175
covigator/misc/compression.py sha256=n-fGowBFF8NKzQkcKbgZTbCOmEVeqe62f1JFZAuJ7aE 249
covigator/misc/country_parser.py sha256=QWGFlR6Uqj25t3s0wxTg3V7AqWwkTPbqgvQLsZSDbKY 1688
covigator/pipeline/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
covigator/pipeline/covid19_portal_pipeline.py sha256=Gnnm9fVoKqV1VTp05GAvxgI0YCh3Wwq8FZRTd2x1b6o 3712
covigator/pipeline/downloader.py sha256=zKiDkM_rBw94xRcvQ5bXbWueP5E8qCNqMxy0Jm90H5A 2703
covigator/pipeline/ena_pipeline.py sha256=-UzIZYCUe-n-vq0h2sAgqm2elJS6fXr4tD5I8wmLao4 6261
covigator/pipeline/runner.py sha256=p314XCEluocsYKMX_1swzlFWbdG-wYL4Rz4Nvkqt_Ms 883
covigator/pipeline/vcf_loader.py sha256=ZI2HrraNWGVtRddg2cTtovwVR7_GhrzzeTFw9yjQMgs 13976
covigator/precomputations/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
covigator/precomputations/load_cooccurrences.py sha256=11m2bnUcgZXTDbpyzkt8FZTp-bWZzXiW2wDORGZEStI 5594
covigator/precomputations/load_ns_s_counts.py sha256=6sxc3EgVZEImATxtIeKlMNprp_2HNTaTvJ7EeE7pxRY 5632
covigator/precomputations/load_top_occurrences.py sha256=J8RuiUtO2jX1_asKesSE4T-jQ88g4BIHFNCOpwZt-XE 5544
covigator/precomputations/load_variants_per_lineage.py sha256=j9MlFgWTU2S5F3zg2DSb5ncvDz27cdd4s72LOJm85WA 3453
covigator/precomputations/loader.py sha256=G8fkqcDa1n5PW7a8DbWbb4xzsXXMvPh8JGXVh0Hm7Js 17548
covigator/processor/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
covigator/processor/abstract_processor.py sha256=iaY-wgKKQWxAOakEnUKRSua5454KqMrp5xsDXrE_ojs 10544
covigator/processor/covid19portal_processor.py sha256=0bZ3q7r2pkw_gWYSEmycnrHGXvMn5-nbQU8n1HUC-A4 3081
covigator/processor/ena_downloader.py sha256=6kI8oWdE-YBvKgPKhNZG6gGfGXgNm8T5rwzEuuUo2KE 3552
covigator/processor/ena_processor.py sha256=BgkJZmUQzh0CW4vReNCjfe9aA7o85MoLt_mGFJqa330 5762
covigator/references/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
covigator/references/conservation.py sha256=BSaLwNLa1k150jC2WmKYzGbh0azu5tVYTZX0YIKa-yo 2503
covigator/references/domains_NS_S.csv sha256=LheYS-dNd9X3qaTm30TBFxcywv2iYkj4-pMoguEP95M 2965
covigator/references/gene_annotations.py sha256=dvzKIx4Nj9lT79RjPahfaeGsJxRwnfLzI7kqTlG1-X4 3699
covigator/references/genes_NS_S.csv sha256=OiG6Se80vRAquCCQpppnGE10J1N8KpcWUCQlQIZygSc 577
covigator/references/lineage_annotation.py sha256=Feza4rIYkUqSOFBRMUG-Fg46Cu1XUqSG2qDqsjc7Wgo 37762
covigator/references/sars_cov_2.json sha256=XCGkPI2ERp-E_wr2dUSd55qtrty_5be7gUnorxu1zFg 601324
covigator/references/wuhCor1.mutDepletionConsHMM.bed sha256=q36c8uuI16HaxnK3FpHXncgEi4rTGidNbzcyR-xzHrU 934358
covigator/references/wuhCor1.mutDepletionSarbecovirusConsHMM.bed sha256=sILS2KwdL0Xnxd6onuUa_HYSfT1Q2sYivQ4o4PN_NzY 932961
covigator/references/wuhCor1.mutDepletionVertebrateCoVConsHMM.bed sha256=ZTKtHxmiBNwzqerm0KJbnbLj2g3u34Lh5RA_9oFTIfE 931439
covigator/references/constellations/constellations/data/SARS-CoV-2.json sha256=Lc1KXH6m9NBxj73eVozrGbUoSE1eRHRS2o-tolGGqGE 33771
covigator/references/constellations/constellations/definitions/cA.23.1+E484K.json sha256=RfD-BKqMxLv5U1ORCZXXO5uwKk6Lhzi6DxcZxtg2w_E 893
covigator/references/constellations/constellations/definitions/cA.23.1.json sha256=0odn6Ghd_luKRrk1FpgihHjIGKp5N4AF6Zpsxx9j5Fo 702
covigator/references/constellations/constellations/definitions/cAV1.json sha256=oH8VHNUD9ZpRtG7TwkJkEJwEL0cE6Uk704vYZQuiBDM 555
covigator/references/constellations/constellations/definitions/cAY.4.2.json sha256=7yCTDhTiqucCjgE9UGecpAoHqki25Wmx2IHmKPAqgoA 564
covigator/references/constellations/constellations/definitions/cAY.4.json sha256=P8Hv4z8L-dsaCU7cf3mafod2lpc8XKk1Z-KSuBvltTo 1135
covigator/references/constellations/constellations/definitions/cB.1.1.318.json sha256=1HrXL3urkeAYwOMc0pBC9olhv8yOkgLeEY_Lnf46vns 942
covigator/references/constellations/constellations/definitions/cB.1.1.529.json sha256=dEAV7soXeKMkuIutHEgPXoeK1TYM2dugbmZ2Pv5QAHs 1456
covigator/references/constellations/constellations/definitions/cB.1.1.7+E484K.json sha256=Dzhz45PiXbCq_TpqM2Q8sSywo2kKIDvS8tXU4dQRCCE 926
covigator/references/constellations/constellations/definitions/cB.1.1.7.json sha256=V_5n8jBdyif_0r6nNrCrYoh1P2tKNPcX9VMrslL27VM 843
covigator/references/constellations/constellations/definitions/cB.1.351.json sha256=ifjs6xODUKyrq_oh0pIMedZgkCiFamHvP32KcMCNcwQ 863
covigator/references/constellations/constellations/definitions/cB.1.427.json sha256=9E6IV9Zr0Jjr4YuSgGUiXyMxaf3FaLKCesJmNYgDRjM 841
covigator/references/constellations/constellations/definitions/cB.1.429.json sha256=eNJtyjjnvq3-_GM-nlHp2yZgZxkzL6nt30sV9OMAYZ0 865
covigator/references/constellations/constellations/definitions/cB.1.525.json sha256=JXZ-Ul5eVO5ZVDUUbMs7KMb2IkJAEg3-nBOWw9rCaq4 975
covigator/references/constellations/constellations/definitions/cB.1.526.json sha256=8G9M-cL17ZjgII2Z7ogUS3bBck18Onj9zMD7hU9tlss 808
covigator/references/constellations/constellations/definitions/cB.1.617.1.json sha256=ShFhkhu7ibVtt4GMbVHBh8mkti2IiCIGzE-tkS4_n20 919
covigator/references/constellations/constellations/definitions/cB.1.617.2+K417N.json sha256=1SwZ90Jiq35_UqN9SP5IR64LS-nCrsxFn7yqvebyi2E 1023
covigator/references/constellations/constellations/definitions/cB.1.617.2.json sha256=aXPsgpT9YqGh0VDBa_rIX3UUTo3coHMTFlC3ljgVkN4 1098
covigator/references/constellations/constellations/definitions/cB.1.617.3.json sha256=kofCZ7lNV5olLS99V_HQcNGQoA1iRhk9qKE1YOxevSU 932
covigator/references/constellations/constellations/definitions/cB.1.621.json sha256=gzxz4dWtzzgB25uYeLre_OAN5200FePY__xbrJkoyZ8 1304
covigator/references/constellations/constellations/definitions/cBA.1.json sha256=ZLMO9h8e0uV-muBx7Fjnl91ksPJ-d9WRogQjaR0tmhM 1332
covigator/references/constellations/constellations/definitions/cBA.2.json sha256=mjBerQzaBvS1MhNOspfU0_aQxvOCvyOolgk3iguIhn8 1353
covigator/references/constellations/constellations/definitions/cBA.3.json sha256=PoVAWdMhDYGbMejRxvJoeXZ0lfeAIz2OCHjiJ5TBwtA 1066
covigator/references/constellations/constellations/definitions/cBA.4.json sha256=avOyZgoLxLUZ5iLEBV-lnsdEMlErtYTaQR0Px-TTudA 1391
covigator/references/constellations/constellations/definitions/cBA.5.json sha256=urvbGbhTUzpSTfTMuKrigPBzsdYJjjz6to7guK47Xog 1353
covigator/references/constellations/constellations/definitions/cC.37.json sha256=PU9DNpZBuBZtuDJlFhENlsurq8ojlqR9pANuYmgr_CU 787
covigator/references/constellations/constellations/definitions/cP.1.json sha256=fAW_ob7AUbE0kzhHIOOZHyHFxyPthMiHiE1suFYPO58 964
covigator/references/constellations/constellations/definitions/cP.2.json sha256=y4cfY3cWNVxBLcK6WTVY__hTnb0AowYK3pKzBzbmXrE 706
covigator/references/constellations/constellations/definitions/cP.3.json sha256=3k4fheEulE8gPCNcOUfADx4SNGD45TJlqIiqKMHp_dk 1051
covigator/references/constellations/constellations/definitions/cXBB-parent1.json sha256=HQTq13SzbyjjYsHPCdblDnt4i6e7_ZnXnALSfLxKTtI 646
covigator/references/constellations/constellations/definitions/cXBB-parent2.json sha256=PiptDcul3c9cmq--qbUlAUMBK31_9rCT-x3UkFqU5Ls 568
covigator/references/constellations/constellations/definitions/cXBB.1.16.json sha256=1A4T-SCzPSRlgOitxpVrNu41ltSEIFnpZvmj-nwqiPM 707
covigator/references/constellations/constellations/definitions/cXBB.1.5.json sha256=Is5I1UEpCjcXTHfaeAEMiskQJuqR0S3xbHMxAdw9qXU 681
covigator/references/constellations/constellations/definitions/cXBB.1.json sha256=YMb_giswM9z8zKKE3JntpWVaWxHKNAPFBQ9VW0gOPFk 634
covigator/references/constellations/constellations/definitions/cXBB.json sha256=PGeQky3aPPH_fNuc4t6PiuDnLYIPdRZRYLwQxJZFxd8 873
covigator/references/constellations/constellations/definitions/cXE-parent1.json sha256=m54_dhV-gYpIIjZPF__7Kk6LGalAEfkgwm-JoGOqHjQ 667
covigator/references/constellations/constellations/definitions/cXE-parent2.json sha256=UNoMEO5IpeMYo8SClw7xNaosvogmlwZfxrQuO3sNTn0 980
covigator/references/constellations/constellations/definitions/cXE.json sha256=A8W0kbr3zcyGgS21puo8mIdpuZ7FIREduROEu0k-d5k 750
covigator/tests/__init__.py sha256=OVZOq5wGc59howDsKgAomlo0IT4pXYmIgaupKkZcK-o 56
covigator/tests/integration_tests/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
covigator/tests/integration_tests/integration_tests.py sha256=ZtBUftC2skxaOnJwmANPsdYj4-uELjrNlixI0VLn1fg 1330
covigator/tests/integration_tests/test_downloader.py sha256=CX6PCoGMUUeVOLOOjUdrS4qc3INxkAo9wRxk25TWOZw 1423
covigator/tests/integration_tests/test_gene_annotations.py sha256=92zn2FntfrmBUIH0s9a3RIF4Lc6w1y7ATfhGO-BuXyw 293
covigator/tests/integration_tests/test_pipeline.py sha256=3w_OB-E_HCU62iw_29_Bnuk-PbHAeLUeCKkXaBXAHh8 827
covigator/tests/integration_tests/test_vcf_loader.py sha256=mYbDMt379dFUgMTSMLIr2x3dbRKXKChCsso1l715zQA 773
covigator/tests/resources/MN908947.3.fa sha256=7sLFCFAJ_QLIxrTbBZg9Nu8fBKhNHxy9uN6R0W6HQjo 30427
covigator/tests/resources/Sars_cov_2.ASM985889v3.pep.all.fa sha256=14c4yBL80zTr3b3rbPTmhBhWj6t4mvf6oMaYS2eMTJY 18016
covigator/tests/resources/Sars_cov_2.all_variants.snpeff.vcf.gz sha256=0ZSKQKqbSzNijkdPVBczP6BBZ_YnqFIeP3PET7wPfJ8 1231182
covigator/tests/resources/Sars_cov_2.all_variants.snpeff.vcf.gz.tbi sha256=9BDA4zsj24aiuoEw53M03levVdF6_MEXvAv7nN8MB-k 132
covigator/tests/resources/domains_NS_S.csv sha256=opB9iukthBWLL4OtqlPc9gbrCoyfSzhA7zJbIVMD36Q 4422
covigator/tests/resources/genes_NS_S.csv sha256=OiG6Se80vRAquCCQpppnGE10J1N8KpcWUCQlQIZygSc 577
covigator/tests/resources/gisaid_allprot0526.fasta sha256=W4JINFVMpsNe1VBskPOA1q2NtUh3hrU5UDlL3nfQszA 13972
covigator/tests/resources/gisaid_allprot1208.fasta sha256=7A_ykddbzTQ0mLgeHjrNYxNqPrwU1m-ZxdxgGUU4rMM 27733
covigator/tests/resources/gisaid_allprot1208.with_mutations.fasta sha256=2PV_A0yjPqMd7LSJuknnN7AFlMCDvobCguJeAJo3Y9M 27784
covigator/tests/resources/sars_cov_2.json sha256=XCGkPI2ERp-E_wr2dUSd55qtrty_5be7gUnorxu1zFg 601324
covigator/tests/resources/sars_cov_2_dn_ds.json sha256=Qeneues16jQrkrD7LZ5t5JOAQd8c1RI8_nHciaxs4Zg 765
covigator/tests/resources/snpeff.vcf sha256=pa13G8QOlCPvzJiPbeNoU_ujlD3It8kJAL3aa0W2xYM 7041
covigator/tests/resources/snpeff_with_deletion.vcf sha256=krH47Ql3hShMPdexqPdQhCaNQkAvmM63XpdbYVJ22H8 4041
covigator/tests/resources/snpeff_with_insertion.vcf sha256=ufY9YvkN5FUth-s4m0n_b1JSiNsma-nItm7Yk3y3FE0 4041
covigator/tests/resources/snpeff_without_annotation.vcf sha256=5PsRi99jOV55om0Axawrn2yDrh-Duwo2fJfjhlfi4gU 3877
covigator/tests/resources/snpeff_without_dp4.vcf sha256=odi0ktfCiIBF8kvaEb9m2Eo_tXjduDwHP821jLLfYEE 4023
covigator/tests/resources/test.another_pangolin.csv sha256=N_9Vm3H1kwzDge_71TyNm1kjpYhIJKcbGBEiqmNyo0o 910
covigator/tests/resources/test.assembly.vcf.gz sha256=U0WXOzmO1XhMRud5TCFljUx1Eopu7MWFG4Pj9i-8Ev4 2148
covigator/tests/resources/test.assembly.vcf.gz.tbi sha256=QjQPjox5Ve74X_vB_J0wpqE35KiJljjs-kh3DzGuf2c 126
covigator/tests/resources/test.coverage.tsv sha256=re7GVceFurClsbUSClDjVYl_Xy8W9ODPhH07eO33JhA 133
covigator/tests/resources/test.deduplication_metrics.txt sha256=wr_V7qWQJoku8p1mffFOcqPwW60-PEs7guw0vlM0ylU 3483
covigator/tests/resources/test.lofreq.pangolin.csv sha256=Jhh06EFXHHU_kY2LyAhFxXlzkruLHtYIdC-cHpRb_wg 395
covigator/tests/resources/test.lofreq.pangolin.with_none.csv sha256=Pbs4Wxw57rW8i2sjqCx7d7RhF33jAvz1WKk4Buly6lI 398
covigator/tests/resources/test.lofreq.vcf.gz sha256=U8RJURLSMjAzWufVud6KdE9K04eji8g7OD9RZvcPATo 3357
covigator/tests/resources/test.lofreq.vcf.gz.tbi sha256=9dD2OVW6xb7x_sJdfHUxuQpm-fZ73UTc9Q0H_JWCAMQ 126
covigator/tests/resources/test_data.fasta sha256=C2PT_fmnM-JUIj5ta_1lYPbV7mvTtiRJaRzOCr_Mnbw 30247
covigator/tests/unit_tests/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
covigator/tests/unit_tests/abstract_test.py sha256=73_TwGMV7hJTghyDc1NORJkgY5KOwrs8wpYj0K0IJtA 3419
covigator/tests/unit_tests/faked_objects.py sha256=xVITMv-yyJemU5msKi1HjitjKWlW7OyCjqt7VBq78EU 4049
covigator/tests/unit_tests/mocked.py sha256=u0CzDiAjq3fO6g5YRIiQBXD5C8aPOtXGirdeeL_PlE8 9533
covigator/tests/unit_tests/test_compression.py sha256=Fc2_fw1Mz2J_IqdHlzjfRwjoAvMYipfsmDVrkIN9nuM 413
covigator/tests/unit_tests/test_country_parser.py sha256=-oSyeZHpngOQDGr95TK8haFwDzAIX35-UHwRGanYDX4 1308
covigator/tests/unit_tests/test_database_initialisation.py sha256=4wKk0BJUAlU0ngcGQ3vsbKwv2lEUqW_BjebTUTjfuDo 8228
covigator/tests/unit_tests/test_downloader.py sha256=bx7uUE4AJZdC1mE1cVt4RToIZ2oOtdkcbFdPBpychAM 3117
covigator/tests/unit_tests/test_ena_accessor.py sha256=p2XCyZijuWa9pDOOGriGi-yNodVmX5siLFjPHoQXaug 33940
covigator/tests/unit_tests/test_figures.py sha256=RR9slKpQ3BVjYYmTSMMEJj5L-zfI2l_VvB8Lx-mRls8 7491
covigator/tests/unit_tests/test_lineage_annotation.py sha256=7xkZr88eRENIA8MOuFNpvYn13abDQ_JWXl0XcZcqt1Y 10320
covigator/tests/unit_tests/test_precomputer.py sha256=2zPXDoY0D2bNgnlTQhmjagbgjJoJ7ARG1FuyLyXeXW4 10466
covigator/tests/unit_tests/test_processor.py sha256=mVnBziiOtHuRdDgrdFEm6DwsAKsF6sn4sXUuKlXZ2ug 8107
covigator/tests/unit_tests/test_queries.py sha256=y5tzfexiTy56nPe7vaJBXQDjl853MFgZg5pAanYeBdE 15886
covigator/tests/unit_tests/test_vcf_loader.py sha256=0lE8c5caTjw4pj6_8vHPTEmR9sBwK3xEdeGBcLVRj38 13056
covigator-2.2.3.dist-info/LICENSE sha256=L3fneZGpwXnQ0oSiDCKYvr6IOfd8lKMqjnlvAXW2ICg 1066
covigator-2.2.3.dist-info/METADATA sha256=Rkl-FF1vD5krMwG97r7hTZjT8YnPNZKdJNFW1JepMaE 6973
covigator-2.2.3.dist-info/WHEEL sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM 92
covigator-2.2.3.dist-info/entry_points.txt sha256=mzmXrdZZ74KjjqrJTIzp38gXzxKZ6IAMfhkr1_gDQMU 524
covigator-2.2.3.dist-info/top_level.txt sha256=Xl3mQ6bTGEX194dvSgMcwtVinuWYLFHmnxGg4Zm7ueg 10
covigator-2.2.3.dist-info/RECORD

top_level.txt

covigator

entry_points.txt

covigator-cooccurrence-matrix = covigator.command_line:cooccurrence
covigator-covid19portal-accessor = covigator.command_line:covid19_portal_accessor
covigator-dashboard = covigator.dashboard.dashboard:main
covigator-ena-accessor = covigator.command_line:ena_accessor
covigator-ena-downloader = covigator.command_line:ena_downloader
covigator-pipeline = covigator.command_line:pipeline
covigator-precompute = covigator.command_line:precompute_queries
covigator-processor = covigator.command_line:processor