enformer-dna-diff

View on PyPIReverse Dependencies (0)

1.4 enformer_dna_diff-1.4-py3-none-any.whl

Wheel Details

Project: enformer-dna-diff
Version: 1.4
Filename: enformer_dna_diff-1.4-py3-none-any.whl
Download: [link]
Size: 39258
MD5: 32b120ab5af5d3d174ab818a3d526a77
SHA256: bcc576d82d4b4b90b82da02f6b297fcc46fc60aec86d8625ad80ed6aa4222ee0
Uploaded: 2023-06-25 16:28:29 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: enformer-dna-diff
Version: 1.4
Summary: This is a package for that combines DeepMind Enformer model with DNA Diffusion project
Author: Tin M. Tunjic
Author-Email: tunjictin[at]gmail.com
Home-Page: https://github.com/ttunja/Enformer_DNA_Diffusion.git
Requires-Dist: absl-py (==1.4.0)
Requires-Dist: argcomplete (==3.1.1)
Requires-Dist: argh (==0.28.1)
Requires-Dist: array-record (==0.3.0)
Requires-Dist: arrow (==1.2.3)
Requires-Dist: asttokens (==2.2.1)
Requires-Dist: astunparse (==1.6.3)
Requires-Dist: attrs (==21.4.0)
Requires-Dist: backcall (==0.2.0)
Requires-Dist: binaryornot (==0.4.4)
Requires-Dist: cachetools (==5.3.1)
Requires-Dist: certifi (==2023.5.7)
Requires-Dist: chardet (==4.0.0)
Requires-Dist: charset-normalizer (==2.0.12)
Requires-Dist: click (==8.1.3)
Requires-Dist: cloudpickle (==2.2.1)
Requires-Dist: colorlog (==6.7.0)
Requires-Dist: comm (==0.1.3)
Requires-Dist: contourpy (==1.1.0)
Requires-Dist: cookiecutter (==2.1.1)
Requires-Dist: cycler (==0.11.0)
Requires-Dist: debugpy (==1.6.6)
Requires-Dist: decorator (==4.4.2)
Requires-Dist: deprecation (==2.1.0)
Requires-Dist: dm-tree (==0.1.8)
Requires-Dist: etils (==1.3.0)
Requires-Dist: executing (==1.2.0)
Requires-Dist: flatbuffers (==23.5.26)
Requires-Dist: fonttools (==4.40.0)
Requires-Dist: future (==0.18.3)
Requires-Dist: gast (==0.4.0)
Requires-Dist: gffutils (==0.11.1)
Requires-Dist: google-auth (==2.17.3)
Requires-Dist: google-auth-oauthlib (==1.0.0)
Requires-Dist: google-pasta (==0.2.0)
Requires-Dist: googleapis-common-protos (==1.59.1)
Requires-Dist: grpcio (==1.54.2)
Requires-Dist: h5py (==3.8.0)
Requires-Dist: idna (==3.4)
Requires-Dist: igv-notebook (==0.5.2)
Requires-Dist: importlib-resources (==5.12.0)
Requires-Dist: ipykernel (==5.5.6)
Requires-Dist: ipython (==7.34.0)
Requires-Dist: jax (==0.4.10)
Requires-Dist: jedi (==0.18.2)
Requires-Dist: Jinja2 (==3.1.2)
Requires-Dist: jinja2-time (==0.2.0)
Requires-Dist: joblib (==1.2.0)
Requires-Dist: jupyter-client (==6.1.12)
Requires-Dist: jupyter-core (==5.3.1)
Requires-Dist: keras (==2.12.0)
Requires-Dist: kipoi (==0.8.6)
Requires-Dist: kipoi-conda (==0.3.1)
Requires-Dist: kipoi-utils (==0.7.7)
Requires-Dist: kipoiseq (==0.5.2)
Requires-Dist: kiwisolver (==1.4.4)
Requires-Dist: libclang (==16.0.0)
Requires-Dist: Markdown (==3.4.3)
Requires-Dist: MarkupSafe (==2.1.3)
Requires-Dist: matplotlib (==3.7.1)
Requires-Dist: matplotlib-inline (==0.1.6)
Requires-Dist: ml-dtypes (==0.2.0)
Requires-Dist: natsort (==8.3.1)
Requires-Dist: ncls (==0.0.68)
Requires-Dist: nest-asyncio (==1.5.6)
Requires-Dist: numpy (==1.22.4)
Requires-Dist: oauthlib (==3.2.2)
Requires-Dist: opt-einsum (==3.3.0)
Requires-Dist: packaging (==23.1)
Requires-Dist: pandas (==1.5.3)
Requires-Dist: parso (==0.8.3)
Requires-Dist: pexpect (==4.8.0)
Requires-Dist: pickleshare (==0.7.5)
Requires-Dist: Pillow (==8.4.0)
Requires-Dist: platformdirs (==3.7.0)
Requires-Dist: promise (==2.3)
Requires-Dist: prompt-toolkit (==3.0.38)
Requires-Dist: protobuf (==3.20.3)
Requires-Dist: psutil (==5.9.5)
Requires-Dist: ptyprocess (==0.7.0)
Requires-Dist: pure-eval (==0.2.2)
Requires-Dist: pyasn1 (==0.5.0)
Requires-Dist: pyasn1-modules (==0.3.0)
Requires-Dist: pyBigWig (==0.3.22)
Requires-Dist: pyfaidx (==0.7.2.1)
Requires-Dist: Pygments (==2.14.0)
Requires-Dist: pyparsing (==3.1.0)
Requires-Dist: pyranges (==0.0.127)
Requires-Dist: python-dateutil (==2.8.2)
Requires-Dist: python-slugify (==8.0.1)
Requires-Dist: pytz (==2022.7.1)
Requires-Dist: PyYAML (==6.0)
Requires-Dist: pyzmq (==23.2.1)
Requires-Dist: related (==0.7.3)
Requires-Dist: requests (==2.27.1)
Requires-Dist: rsa (==4.9)
Requires-Dist: scipy (==1.10.1)
Requires-Dist: seaborn (==0.12.2)
Requires-Dist: simplejson (==3.19.1)
Requires-Dist: six (==1.16.0)
Requires-Dist: sorted-nearest (==0.0.39)
Requires-Dist: stack-data (==0.6.2)
Requires-Dist: tabulate (==0.8.10)
Requires-Dist: tensorboard (==2.12.3)
Requires-Dist: tensorboard-data-server (==0.7.1)
Requires-Dist: tensorflow (==2.12.0)
Requires-Dist: tensorflow-datasets (==4.9.2)
Requires-Dist: tensorflow-estimator (==2.12.0)
Requires-Dist: tensorflow-gcs-config (==2.12.0)
Requires-Dist: tensorflow-hub (==0.13.0)
Requires-Dist: tensorflow-io-gcs-filesystem (==0.32.0)
Requires-Dist: tensorflow-metadata (==1.13.1)
Requires-Dist: tensorflow-probability (==0.20.1)
Requires-Dist: tensorstore (==0.1.38)
Requires-Dist: termcolor (==2.3.0)
Requires-Dist: text-unidecode (==1.3)
Requires-Dist: tinydb (==4.8.0)
Requires-Dist: toml (==0.10.2)
Requires-Dist: tornado (==6.3.1)
Requires-Dist: tqdm (==4.65.0)
Requires-Dist: traitlets (==5.7.1)
Requires-Dist: typing-extensions (==4.6.3)
Requires-Dist: tzdata (==2023.3)
Requires-Dist: urllib3 (==1.26.16)
Requires-Dist: wcwidth (==0.2.6)
Requires-Dist: Werkzeug (==2.3.6)
Requires-Dist: wget (==3.2)
Requires-Dist: wrapt (==1.14.1)
Requires-Dist: zipp (==3.15.0)
License-File: LICENSE
[No description]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.38.4)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
enformer_dna_diff/__init__.py sha256=8B_4G0wD2Mr65qE6cArFZas-hY2bkZtGfcM4pL1TTjA 43
enformer_dna_diff/enformer.py sha256=9o2mMAT7ABVZGM_qD-LSp3sDN-EAmA2nAnlCdgXw52Y 3851
enformer_dna_diff/enformerops.py sha256=pD0tQt3MDSqyTlcJGYaURmtBZXoGe0qYcBscisq180w 12998
enformer_dna_diff/main_script.py sha256=IvqLykp_1tW63c7-v0t7Ns5nTkHprHdP-6WmGFU1vd8 33364
enformer_dna_diff/real_main_script.py sha256=mF_N-BeeuwjpCDyfiWDog-qoYRD8rPfxhlGD2Jj87QY 11745
enformer_dna_diff/utils.py sha256=5Mgmhveo2NgNMWBzdbocxR7t9uTD1g7Gxfv6DKFzEAo 2511
enformer_dna_diff-1.4.data/scripts/get_data.py sha256=F-tVqnDIzC0h62mMNLoVaJ2lMonx4Exs-v5PbOiAduw 1999
src/__init__.py sha256=8B_4G0wD2Mr65qE6cArFZas-hY2bkZtGfcM4pL1TTjA 43
src/enformer.py sha256=9o2mMAT7ABVZGM_qD-LSp3sDN-EAmA2nAnlCdgXw52Y 3851
src/enformerops.py sha256=lUwWKf4YS5fZaOyByroyQ2kjawaFu0Nj9qM_O3Fu_Os 12996
src/main_script.py sha256=IvqLykp_1tW63c7-v0t7Ns5nTkHprHdP-6WmGFU1vd8 33364
src/real_main_script.py sha256=mF_N-BeeuwjpCDyfiWDog-qoYRD8rPfxhlGD2Jj87QY 11745
src/utils.py sha256=38UVYcPvveaIT5ZtkH9X6obP7qexJa7hEYjSlMNq464 2510
enformer_dna_diff-1.4.dist-info/LICENSE sha256=4PhYk4_XAJ1J1TaRNfcsAAdkUaBhgFibcOJExuPMcLo 1063
enformer_dna_diff-1.4.dist-info/METADATA sha256=lXpn17v0sjHgR-02jS4-ClDKcv1YavJRf32rmdg3dgU 4903
enformer_dna_diff-1.4.dist-info/WHEEL sha256=2wepM1nk4DS4eFpYrW1TTqPcoGNfHhhO_i5m4cOimbo 92
enformer_dna_diff-1.4.dist-info/top_level.txt sha256=pXNcmkPk8V3dGDo8se2M5sU-oDYB43ysJJWV5S14Ixs 18
enformer_dna_diff-1.4.dist-info/RECORD

top_level.txt

enformer_dna_diff