genomics-data-index

View on PyPIReverse Dependencies (0)

0.9.2 genomics_data_index-0.9.2-py3-none-any.whl

Wheel Details

Project: genomics-data-index
Version: 0.9.2
Filename: genomics_data_index-0.9.2-py3-none-any.whl
Download: [link]
Size: 2378099
MD5: 599f1f06a8aca845f7532a886ecd9d0d
SHA256: a123efbd1cc91100667e1a467c2a42f2aa2f673312b8a16c9bf9309c826cffb4
Uploaded: 2022-12-07 17:03:47 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: genomics-data-index
Version: 0.9.2
Summary: Indexes genomics data (nucleotide variants, kmers, MLST) for fast querying of features.
Author-Email: Aaron Petkau <aaron.petkau[at]gmail.com>
Project-Url: Homepage, https://github.com/apetkau/genomics-data-index
Project-Url: Bug Tracker, https://github.com/apetkau/genomics-data-index/issues
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Operating System :: POSIX :: Linux
Requires-Python: <3.10,>=3.8
Requires-Dist: biopython (>=1.70)
Requires-Dist: pandas (>=1.0.0)
Requires-Dist: numpy
Requires-Dist: scikit-bio
Requires-Dist: scipy (<1.9)
Requires-Dist: vcfpy
Requires-Dist: sqlalchemy
Requires-Dist: pymysql
Requires-Dist: requests
Requires-Dist: ete3
Requires-Dist: PyQt5
Requires-Dist: biocommons.seqrepo
Requires-Dist: click
Requires-Dist: click-config-file
Requires-Dist: coloredlogs
Requires-Dist: pyyaml
Requires-Dist: pyroaring
Requires-Dist: sourmash
Requires-Dist: pybedtools
Requires-Dist: snakemake
Requires-Dist: Jinja2
Requires-Dist: pathvalidate
Requires-Dist: pytest
Requires-Dist: zipp
Requires-Dist: packaging
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 13848 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.38.4)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
genomics_data_index/__init__.py sha256=oajJt3Ql4HWyLBla3cYG-B4GDODdrzI1Nd-Z1q9_ndk 27
genomics_data_index/ete3treeview.py sha256=xYUkwADSszWFrC5PVMbruCQ91q1zww4ydB9FMJFEm1g 5007
genomics_data_index/api/__init__.py sha256=6ORHcxeUNWuz3Be5f_oWBmxWqi6pr8NqavgOQ_VPj4U 78
genomics_data_index/api/query/GenomicsDataIndex.py sha256=4T0PQpSEH3eRvZ9-rIR_Z80552u2mr8i8xHyZOICVnw 21701
genomics_data_index/api/query/SamplesQuery.py sha256=byeU_8qsNdaS9YCVkrMFi3pP-O5KVQHelFjmwMRnEDc 29575
genomics_data_index/api/query/TreeBuilder.py sha256=cEYgpyyomoizQ1evjuTJxdnsblS9OXng_z43x_OG1jE 325
genomics_data_index/api/query/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/api/query/features/FeaturesComparator.py sha256=_GQ0mnlkfU3Pggk81XxjYayRsWyRo5PjooPAF0W51kg 5933
genomics_data_index/api/query/features/FeaturesFromIndexComparator.py sha256=QJozjlD1gxv_vD_wWVK6Fu0VjKgA8QbgPFwJQAH8uGY 14795
genomics_data_index/api/query/features/MLSTFeaturesComparator.py sha256=h_EeNbidE7GV7-u3wYsYRD1ru13ww69gFVidwATQCkM 3768
genomics_data_index/api/query/features/MutationFeaturesFromIndexComparator.py sha256=MCpGV3sFgQNjYea2osS7fGQi0l4I-qhr4RZ0jwcJHpI 4308
genomics_data_index/api/query/features/SampleCategoriesClustererExperimental.py sha256=cfW4W8MsBDEJQ1obd2MQYx1X76VvqMS3Xp1ri_oB-vE 2410
genomics_data_index/api/query/features/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/api/query/impl/ClusterScorer.py sha256=CsTQefDViZDJJoEw8ugE0Cgz75h0v6hw-cBRgwjxZiE 6899
genomics_data_index/api/query/impl/DataFrameSamplesQuery.py sha256=czrLfvcfte-OidEx5T7PqBu_a2eyGBEAi-BTsnkaAhw 18128
genomics_data_index/api/query/impl/ExperimentalTreeSamplesQuery.py sha256=QGr0XcHSTvPeabPx0T44CNktiCXS72Ii_yEwxtpf3Lw 8502
genomics_data_index/api/query/impl/KmerTreeSamplesQuery.py sha256=3uSVGQl3aDvmZ2mnE9k070sfunL_JTNxA1bVH7tkGaM 3274
genomics_data_index/api/query/impl/MutationTreeSamplesQuery.py sha256=iSHlqZT-DquaJJJ5YxqCzhP4IaVGxoGDXxC4W3Qrm7I 6542
genomics_data_index/api/query/impl/QueriesCollection.py sha256=CEbTPUFxpM-dC_gCJXhIT3a7M8EKwvNvc0IZBq1_9w0 794
genomics_data_index/api/query/impl/SamplesQueryIndex.py sha256=v0DtLTaebRfv0kc6gdWW8RBHEWj4tdVdiPElXXYaj98 37663
genomics_data_index/api/query/impl/TreeBuilderKmers.py sha256=an8-cV5Q873u3dWGFWMDdb17Ad94QwZKS5neQdV0Opw 1763
genomics_data_index/api/query/impl/TreeBuilderReferenceMutations.py sha256=BwjZwCpPg2Aryv772nlxQBcx8_QKyQMeHBj3s5UH0DY 3462
genomics_data_index/api/query/impl/TreeSamplesQuery.py sha256=PMPKSjVgmmzrvDiKtoFE6Cz2Y4axjBd4IxXmVl5oRxM 20897
genomics_data_index/api/query/impl/TreeSamplesQueryFactory.py sha256=jwUZbES35UY13VOLlY494s9DlilDJwhvv6LaspaWlB8 13681
genomics_data_index/api/query/impl/WrappedSamplesQuery.py sha256=d16gntcwQ6UF-0k35cAGb6ip3J-Tr4Md152rgmDbNUE 13072
genomics_data_index/api/query/impl/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/api/query/impl/cluster/ClusterScoreMRCAJaccard.py sha256=jKaksdp3_yVGwaa-l3-xNskVIGVt0OXCM4G925DoMSw 1083
genomics_data_index/api/query/impl/cluster/ClusterScoreMethod.py sha256=5HM7lk7BJwFIyrGsekm7P23VpBcS20UvyRFke7edgic 1079
genomics_data_index/api/query/impl/cluster/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/api/query/kind/IsaKind.py sha256=BqIX03Vb8ZFOra9FSpqFW10GJz9jTGRhbXslY-O4WqM 75
genomics_data_index/api/query/kind/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/api/query/kind/isa/DelegateIsaKind.py sha256=rA1fxXtEeTj9OlR3byIK_dOsVLwnc92bCShQbnXGtcw 477
genomics_data_index/api/query/kind/isa/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/api/query/kind/isa/typing/ExperimentalSARSCov2ConstellationsTyper.py sha256=FlD4YlAlliRmBPo-k3At_VbHrrUtycsEeKKjqVqpLd8 15032
genomics_data_index/api/query/kind/isa/typing/SamplesTypingIsaKind.py sha256=MtSDGz38KqwkMkaJGzzLnjI_mwWWMYgwq6nQkjbB9pk 942
genomics_data_index/api/query/kind/isa/typing/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/api/viewer/TreeSamplesVisual.py sha256=TCNwJ1jbC4vWDF3-iDNySu7slHMqRJ1a4psOs4FjkPM 6209
genomics_data_index/api/viewer/TreeStyler.py sha256=YXFTDEo-L6cAdxb7nG80oYibWMwH4GhIVo-78GZdRxA 52938
genomics_data_index/api/viewer/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/api/viewer/samples_visuals/AbstractAnnotationTreeSamplesVisual.py sha256=M-xpqx4TepxApodP9JoLFhsHec2wYVtO4BKHOl_ulKA 3283
genomics_data_index/api/viewer/samples_visuals/AnnotateTreeSamplesVisual.py sha256=B6iItZiiuizfqWMxtL7SVH9f3u841q9c-E6jcwfFPLk 8675
genomics_data_index/api/viewer/samples_visuals/AnnotationSpacingTreeSamplesVisual.py sha256=0DZmaV02eVZWKwhyHntDQ-GvRfTMaGlQeeOF4FfmJTg 1782
genomics_data_index/api/viewer/samples_visuals/HighlightTreeSamplesVisual.py sha256=uBbbdx4Vha61MmbLVyWl31kJkMw5s_xllTigFS5MOM8 3459
genomics_data_index/api/viewer/samples_visuals/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/cli/__init__.py sha256=EzpDcRGSXSz_uiwL6LMqRnfyD-BOQHQmXX3cc7B96VI 493
genomics_data_index/cli/gdi.py sha256=Tyf0WfUgkxjMDHm-mcODPb4XGAyssUhLXd97szuuj_w 52315
genomics_data_index/configuration/ConfigFile.py sha256=0n2ptO7Ok1uNj91UdfhqRFHwLMHVCM9bp0IaROsNfag 2496
genomics_data_index/configuration/Project.py sha256=VvVEpjZgo0vKFH5pgHHgnL04N9B-oQ__gMrzGFPa5Yk 3853
genomics_data_index/configuration/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/configuration/connector/DataIndexConnection.py sha256=U5SfUqTmm07v9L7u-5EYhFz8NJ9RiJI2qqI_10-uaT4 6708
genomics_data_index/configuration/connector/FilesystemStorage.py sha256=1JGAHCZ5pKslLn6b4z-kJ2TKUwale5wLFI7jcJbjtWk 2366
genomics_data_index/configuration/connector/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/pipelines/ExecutorResults.py sha256=_4F19odU9j0Gcru1xdY-8V6mwWFK5eXbPO0szcei7uM 226
genomics_data_index/pipelines/PipelineExecutor.py sha256=CBSumW45HPiDzHbF4BX6mwX1Dgj9bGEhsQFjsaJihXo 14375
genomics_data_index/pipelines/SnakemakePipelineExecutor.py sha256=7eLEDYrT2fEnwP7O19R61VvQn4_VOlvUEbPjMJMbgwY 8064
genomics_data_index/pipelines/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/pipelines/snakemake/main/README.md sha256=GV2jJNILDE_ERUnm-cmBGACHOwttsEU9MbE2h5jDyr4 1843
genomics_data_index/pipelines/snakemake/main/clean.sh sha256=xj4_eaiQ00PM6k2Oi3nZ27OnJWJ824dVqYdxXG6L-y8 194
genomics_data_index/pipelines/snakemake/main/config/config-all-data.yaml sha256=QeXgO1q70lm3KjjSltF5JcMeBaRWfiVvC2VYn2SYCCU 310
genomics_data_index/pipelines/snakemake/main/config/config-reads-single.yaml sha256=P9DDTFLkJzY0hsj50JoQMwEQhlTtmjcL_zkNs_8WfSk 303
genomics_data_index/pipelines/snakemake/main/config/config-reads-snpeff.yaml sha256=6E_En43cEFhYiVq8iFETrNonXBs3F8t2O-jIg7rR7WM 315
genomics_data_index/pipelines/snakemake/main/config/config-reads.yaml sha256=MRigGlgMgn_O1AB7dG4uU3CWYPzPoCH9mI4b4qAbj0M 296
genomics_data_index/pipelines/snakemake/main/config/config-snpeff.yaml sha256=cTYyrPWg89eY5TVV7ULyz_cd0aJJH1kthtwVtVGeEbU 367
genomics_data_index/pipelines/snakemake/main/config/config.yaml sha256=z5Pmi7H-wA_RYIaTyTBX6s_GaizvzqizTuvLFauJIts 349
genomics_data_index/pipelines/snakemake/main/config/samples-all-data.tsv sha256=Dd8_QLV-KvntGlAb8pqpgFpky2KOf4zjtC2dQoUcvKE 228
genomics_data_index/pipelines/snakemake/main/config/samples-reads-single.tsv sha256=CkoOVX28eHQC0e-uQJ0Tx1erEU27h-wTF5KnhcMUUYE 72
genomics_data_index/pipelines/snakemake/main/config/samples-reads-snpeff.tsv sha256=uX5ZDkqSZlnny9FcVyIUQT_S4Gr399a-tWB363R9EGM 115
genomics_data_index/pipelines/snakemake/main/config/samples-reads.tsv sha256=bMJZN6V8zHeAGc9HtBBN6c-HUbRkMM0XCtTISe8Ugtc 101
genomics_data_index/pipelines/snakemake/main/config/samples-snpeff.tsv sha256=l_AQ7X7YDwTBfmg6LgfkDmO2_G1lSpQMAx94QBPU-1w 75
genomics_data_index/pipelines/snakemake/main/config/samples.tsv sha256=BoFV4Mcerzamsg_j250s1BeKyaduGdfhaYprVFy1TEQ 67
genomics_data_index/pipelines/snakemake/main/input-data/NC_011083-5000-snpeff.gbk.gz sha256=VJM_El6ivAsn31-GWEb7XQeX2gNs26gK5SzEYR5X72I 5798
genomics_data_index/pipelines/snakemake/main/input-data/README.md sha256=ZkHAb8AI1AMsbhedpZ14dkiT6GRb6KxFnI5fYOPCcTY 296
genomics_data_index/pipelines/snakemake/main/input-data/SampleA-snpeff.fasta.gz sha256=15Rn--8ykeeyeqxmWSKOCFlaYF3yS5fT43WgUW4Wi5Q 1771
genomics_data_index/pipelines/snakemake/main/input-data/SampleA-snpeff_1.fastq.gz sha256=5jt-hQi5ysUjD0iX9fN1k4Kf4EoYBgHQ69sKUA42s9Q 31343
genomics_data_index/pipelines/snakemake/main/input-data/SampleA-snpeff_2.fastq.gz sha256=ldFEM1dpghFdYAo9fxKJVD28-ElGoqeOEUpsdMT7pME 41557
genomics_data_index/pipelines/snakemake/main/input-data/SampleA.fasta sha256=6ZvC0qe6vIxQtb6wdKctA4_HRBPTDv_S1kFo-CiN6Ec 4836
genomics_data_index/pipelines/snakemake/main/input-data/SampleA_1.fastq.gz sha256=2mSF6YZpFOaxef_F29FKZ_XnBKsvlgIooLDHiCPaJSA 26124
genomics_data_index/pipelines/snakemake/main/input-data/SampleA_2.fastq.gz sha256=pw3oipHv2T16Q4eLqJQYSdxp3AfD76GZFJrAtmyTjSM 34866
genomics_data_index/pipelines/snakemake/main/input-data/reference.fasta sha256=u9BvrFMM6I4LCp5EZ1i_oCXWmontJln1j-50bPxV1uA 5265
genomics_data_index/pipelines/snakemake/main/input-data/reference.fasta.fai sha256=smAOfc1Jnhv6ut64Bk1R_F_kkktV7FFUDnjKeCNsyD8 24
genomics_data_index/pipelines/snakemake/main/workflow/.gitignore sha256=kdh7pc6YuUXtpOA3sI5YOFIPJ1UBghRBcQv6m_YUjAY 44
genomics_data_index/pipelines/snakemake/main/workflow/Snakefile sha256=iPs_PNrBZ5lAaIOoQYNFQzorImBI0hrm6FfMulJWpVM 11912
genomics_data_index/pipelines/snakemake/main/workflow/envs/bcftools.yaml sha256=iszqOgN0MVZt6V4PXxmlAQb-5evbz7twFYkXGF7BZ-s 115
genomics_data_index/pipelines/snakemake/main/workflow/envs/bedtools.yaml sha256=mzfpneu3MP-gGk1BKQjH2T3XGKBtPSD0epnSvhplGYQ 88
genomics_data_index/pipelines/snakemake/main/workflow/envs/gdi.yaml sha256=RcH4mgyZNtiaQt36COxY87Jw7OQtVZ0OiTr2RBtLuyE 335
genomics_data_index/pipelines/snakemake/main/workflow/envs/main.yaml sha256=5QUyD0RRK8CH5aZJGrClKsrr_PYMPjuUPMkdyvBK8s8 154
genomics_data_index/pipelines/snakemake/main/workflow/envs/minimap2.yaml sha256=XHlqeNUH39d5wvL3_OJ2XrvqonVkkxflWiN374-cnpU 92
genomics_data_index/pipelines/snakemake/main/workflow/envs/mlst.yaml sha256=NMXRslVCQr4hamKioT4pbl8_YTFavy-eh8hV2r3rMks 75
genomics_data_index/pipelines/snakemake/main/workflow/envs/snippy.yaml sha256=127vWWgnigXFHqOxr-_Z8kY3S0F9Um3zQTNw0iaJcF0 77
genomics_data_index/pipelines/snakemake/main/workflow/envs/snpeff.yaml sha256=YHKiXBnpyD5iZauUodncM0rDksNGkPbUXReY4UqXHms 170
genomics_data_index/pipelines/snakemake/main/workflow/envs/sourmash.yaml sha256=pwY1EHngSwiLU6QRyLuIlKZoPT8-2v3QZ1nappSr1FU 88
genomics_data_index/pipelines/snakemake/main/workflow/scripts/create-snippy-mask.py sha256=jthUqECPEoWbXPUmH5KRchA8bi_b4ybrQ3wxf3kPaxs 681
genomics_data_index/pipelines/snakemake/main/workflow/scripts/fasta-to-genome-bedtools.py sha256=1ZmRVWKCnPSi0voYyVqly0uQz9U8KI2-tDzVYM5v6_k 684
genomics_data_index/pipelines/snakemake/main/workflow/scripts/gdi-create-fofn.py sha256=VWELgN9W0X-QNq23ws5JSmz8zHDK0lu4WmyWkelMjnI 2376
genomics_data_index/pipelines/snakemake/main/workflow/scripts/prepare-reference.py sha256=2Q1PbKgAqAKgxO0z6kohg3If8UgJK70h7HsvP7xVaeY 373
genomics_data_index/pipelines/snakemake/main/workflow/scripts/prepare-snpeff-database.py sha256=OTnFQbnlQ5h5Hz1QC_dcVPU7Hn82ew84HcjpBVC6kk8 1096
genomics_data_index/pipelines/snakemake/main/workflow/scripts/variant-snpeff.py sha256=NtvD9Z3z1AIiLDNYNs8Wzjfhqjuvkt5429yjZ9NFBU0 458
genomics_data_index/storage/MaskedGenomicRegions.py sha256=mvqIzr7VU-hW8M1dSm4C6ysaar6iR8EY4yIAtQrTyc4 8203
genomics_data_index/storage/SampleSet.py sha256=FAdEeTvIW4GbqDKJpZxYNJ81A2B5X3uZpqciyKchgQ4 5286
genomics_data_index/storage/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/storage/index/KmerIndexer.py sha256=QOFsRp_ncEklzUBm8fxSXguabpSUA0L43FImnaDW5Us 4524
genomics_data_index/storage/index/KmerSearchManager.py sha256=HbjskW8gYFM5F-hZ0AXHjFrYBPcf_GrX5U1OpgsBzds 2754
genomics_data_index/storage/index/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/storage/io/FeaturesReader.py sha256=loWE-P8nCCljQMMRJH68cpJsuZEt7Sq_I5b4cvsyvlQ 1980
genomics_data_index/storage/io/SampleData.py sha256=-e0_V2_AsB2_wDKyTnQAa1t6c5gHg0iScvHiqpqxZYw 1497
genomics_data_index/storage/io/SampleDataPackage.py sha256=aWxwN74pVfgCP5GCG8AecuwcKD39iDPXhXrDETMFnOU 826
genomics_data_index/storage/io/SampleDataPackageFactory.py sha256=dq4BIeztrf3zfI-m7VEII04HKwwedlSLku80KLkbQ6s 431
genomics_data_index/storage/io/SampleFilesProcessor.py sha256=_o_ChNiYknC-c8XAuJJHKVdJHelfzVH8_XPsNAAQKps 318
genomics_data_index/storage/io/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/storage/io/mlst/MLSTChewbbacaReader.py sha256=jnsQiCs5QYKJp3aYJxA119jAGDAFnO-jIEd3ShMIouI 1698
genomics_data_index/storage/io/mlst/MLSTFeaturesReader.py sha256=mvISnWUvXrQgZktA8XBxtmaNWNtRtuV2takRO9W168Q 2827
genomics_data_index/storage/io/mlst/MLSTSampleData.py sha256=grNNJqmpk5JDWrRUvVOl0ftNKpPD4Ol9ASMvRz8KK0Q 726
genomics_data_index/storage/io/mlst/MLSTSampleDataPackage.py sha256=sJBNb4GUWoc6dCdmWkELKPf0rQLMRU1ZUzN0DZQDqOo 1618
genomics_data_index/storage/io/mlst/MLSTSistrReader.py sha256=3Vb7eKVN8uyovhbpK9KXKCOHvVXhyhETBsQpEJvaHtQ 1608
genomics_data_index/storage/io/mlst/MLSTTSeemannFeaturesReader.py sha256=jDlqWTx5LqscNTHgyMDcscKVfhk5tqB1CykVBXCRQ70 1868
genomics_data_index/storage/io/mlst/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/storage/io/mutation/NucleotideFeaturesReader.py sha256=jW9qzETD84u08x7GFwWesS_MigElsvDq2Qpn4P7Qoh4 531
genomics_data_index/storage/io/mutation/NucleotideSampleData.py sha256=nQZ-E4lmxI926GfmTF2_D_3V-SmuCEI5rRJjAH4t5DQ 7257
genomics_data_index/storage/io/mutation/NucleotideSampleDataBedMask.py sha256=Jh2gziixZ-u7bXsxAaIu1bh-jdQ2i38TCPuYamiHfz4 1830
genomics_data_index/storage/io/mutation/NucleotideSampleDataPackage.py sha256=7mdxMBNR7iNqdxoffvpR0G16YV-Svzf_pZkUcDsSO1w 8349
genomics_data_index/storage/io/mutation/NucleotideSampleDataPackageFactory.py sha256=C1DZYBtL_ujr0MQI8o4Lk9Houu8wpKBxkJkXpqaNtso 8536
genomics_data_index/storage/io/mutation/NucleotideSampleDataSequenceMask.py sha256=ooV3zngbiz0lJRT_7zWuqiSnSGpjYNTzgz4aXeRX0FQ 2866
genomics_data_index/storage/io/mutation/SequenceFile.py sha256=zlhyUV_RL8uvVC-Lo6yw_vGIuwSLljCKXePgKbOF7wc 10537
genomics_data_index/storage/io/mutation/SnpEffDatabase.py sha256=Lsnq2oZssA5LmBDO5aUsrnBuu3rWxetHo9zcr2GPxB0 3595
genomics_data_index/storage/io/mutation/VariationFile.py sha256=Mv457WXq4gOpebd7N0gfZqQY3EffLlOHqYbdiGxhNN8 10610
genomics_data_index/storage/io/mutation/VcfSnpEffAnnotationParser.py sha256=OOI7kXqEw0dT_8m6G0hOqwgkAQL2H6vkZxM3Rrcb29c 12046
genomics_data_index/storage/io/mutation/VcfVariantsReader.py sha256=luTwS6GIhkCLZm4EfaeeXhr4C8PfbQyPNOYfSTYHWjw 3716
genomics_data_index/storage/io/mutation/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/storage/io/mutation/templates/snpEff.config sha256=ah1PeyLrcvBRqlLhAYINS3D1QwnHcRGjNTwNdIIv2a4 14952
genomics_data_index/storage/io/mutation/variants_processor/MultipleProcessVcfVariantsTableProcessor.py sha256=A_lQxNWAUGZX4-ceP2CL9uyl1nZZzIFH1e5aIaFAvGw 2444
genomics_data_index/storage/io/mutation/variants_processor/SerialVcfVariantsTableProcessor.py sha256=5pPKJze8AwiTWW2Cqc3708CyNTpMGM5oxz-y4z8BZ7g 1627
genomics_data_index/storage/io/mutation/variants_processor/VcfVariantsTableProcessor.py sha256=yWHNvpfjQRlHoyWfMPt2cOMJ7MlRQlGKNHaFoRAkip0 1875
genomics_data_index/storage/io/mutation/variants_processor/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/storage/io/processor/MultipleProcessSampleFilesProcessor.py sha256=wquvakfNmYbG5ku9vfCauWKGNm70ygJFqZ3pd1p43KA 1868
genomics_data_index/storage/io/processor/NullSampleFilesProcessor.py sha256=IjzB8x8tK5tpMdCP8l0Eb2ORi4G4VpWUKyMSbp1XjgA 721
genomics_data_index/storage/io/processor/SerialSampleFilesProcessor.py sha256=391A69AonD2Ugf_1D4QWTzgPZEgNDmYZmoT9Em3t8_A 726
genomics_data_index/storage/io/processor/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/storage/model/NucleotideMutationTranslater.py sha256=TyoYSSCJnZwemIXv9YTkZOSr2XEbzTsO-cZo6CZsDCg 2904
genomics_data_index/storage/model/QueryFeature.py sha256=qGzzZ_4aVKNy4CvrOl-lfgOvBNpZi0uVrRQcp48V6-o 1509
genomics_data_index/storage/model/QueryFeatureFactory.py sha256=mrWTvVi7gIrMe4VIMf0-O3hGoiIH5iJPBoO2wpXAB-8 1661
genomics_data_index/storage/model/QueryFeatureHGVS.py sha256=VFY97XaoomOHABUzjdkGNLup1LxTuK0ZNXMMv-LsP_c 4421
genomics_data_index/storage/model/QueryFeatureHGVSGN.py sha256=g1X7tiI5D1-uNLCISQBjBMALXBZf1n18U9cl71sk5do 2195
genomics_data_index/storage/model/QueryFeatureMLST.py sha256=EMpVAYqHH8v8LzdV9AFYyUS2XLCK35jC4Kpj5yxhczU 2874
genomics_data_index/storage/model/QueryFeatureMutation.py sha256=hjBoEXp65oBEkpbbsx3DuQs0HT2BE7Wshd5XO1Y8hvI 189
genomics_data_index/storage/model/QueryFeatureMutationSPDI.py sha256=ucOxqFhGwVFCjspOjKCcPzyt3ZpHKUfrQRQgVnI-6ms 3327
genomics_data_index/storage/model/__init__.py sha256=Sr0t47QguCEvft3Lxy5U-fkowXtaoOoriT5xv3RBCLg 136
genomics_data_index/storage/model/db/DatabasePathTranslator.py sha256=_A5xBdVdj-0ziiks6al7KoVKX0ULXmwMh6Hg0dBJj80 1513
genomics_data_index/storage/model/db/__init__.py sha256=SypoLaw4sZ_pF--fA6nH-doZQ93rqWK5jnimqPf1I54 16251
genomics_data_index/storage/service/CoreAlignmentService.py sha256=moUYnhk6RKNJ92kVy8uSLm3WXW-h3urg7i2FU2OBro0 12034
genomics_data_index/storage/service/FeatureService.py sha256=a9-wfc1-B4-8eKSFHtCIwyHHcLlaaD5ZaE_Q4nngVs8 13688
genomics_data_index/storage/service/KmerService.py sha256=6n3fT7GgLpXUTi7XMlS5_WQo8oWVra8dsnBQ9Oz23lA 6652
genomics_data_index/storage/service/MLSTService.py sha256=8qFbEl8ugMDXOErMO2iZHj7HDO0gN8EbfiQR9dUf9rc 6775
genomics_data_index/storage/service/ReferenceService.py sha256=umN3xDIME60Nfw3LTUEsOaJ2Pz9in2mYL2vdbe69g5o 5904
genomics_data_index/storage/service/SampleService.py sha256=MeQUfBOCnaU9OZa2FK0Kom-w_Iv1KM6yBY1mzMdaVl4 23812
genomics_data_index/storage/service/TreeService.py sha256=Pk8p4tlEYq3-8x2hqcH3q6vv2aTPRkI25yj1jAMiDQs 5264
genomics_data_index/storage/service/VariationService.py sha256=N6kQ2UZ0d4G9S1erj4UY_kXyMf6fbQeGzjOJUk30IIs 18769
genomics_data_index/storage/service/__init__.py sha256=GkK-p8C1bDToj39TfT3K1uB1DWcrOls2po16zoq-Omk 5839
genomics_data_index/storage/util/ListSliceIter.py sha256=2YbYCapCMqlKKf7h7SfQ4Fltf5Gjr2cvinBTOlAO5tY 768
genomics_data_index/storage/util/SamplesProgressLogger.py sha256=vCy0rCFAhhFCrtEMGkanzE9h67wLbVQLtgoPiBDq2R0 1712
genomics_data_index/storage/util/__init__.py sha256=pwW9tWCf3xE_lUttQ4__cOLwGn2NNwvCBmI3MfNTnm4 950
genomics_data_index/test/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/integration/__init__.py sha256=B4arywBh-QHTmIRSWZ25LDSgNtmquFA6wb3T8MjmM-c 4397
genomics_data_index/test/integration/api/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/integration/api/test_GenomicsDataIndex_api_import.py sha256=TCKsYLj4CFCq3QcEERE_JwVMAsGVM_EnE5oxGa8Ghzg 3138
genomics_data_index/test/integration/api/query/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/integration/api/query/conftest.py sha256=qtFqS41yoN6WazRKCyS3JZIX5k7FOiV0CEj3_7bJJ5g 10913
genomics_data_index/test/integration/api/query/test_ClusterScorer.py sha256=NOl2MxqvHwmFUI1vaxUucc-7tpvrPgpi3BLIvEU4CPc 9614
genomics_data_index/test/integration/api/query/test_GenomicsDataIndex.py sha256=bysps2NcXtcDhKG3p5DHl0Eo1uZ5WO0tNPDrD7Cs4YY 31789
genomics_data_index/test/integration/api/query/test_GenomicsDataIndex_from_project.py sha256=Ih_8KEsshKZ96aAWSK9_NEkV8yHvvd85xFlQaVqX2-E 1346
genomics_data_index/test/integration/api/query/test_GenomicsDataIndex_samples_query.py sha256=r7NsQCVbXT3ucJTF9bp0-8TqpKtXGh_SDe4e3uD4Axc 285216
genomics_data_index/test/integration/api/query/test_TreeBuilderReferenceMutations.py sha256=UAlTGGmpXWBwLNOykMRwlyeUcpTAWpw8ma5MBwd5VX0 3596
genomics_data_index/test/integration/api/query/test_TreeSamplesQueryExperimental.py sha256=FcFjssot43v_YDlgfbUCqjEkeDuwc0LLExa_NHA6__A 2473
genomics_data_index/test/integration/api/query/features/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/integration/api/query/features/test_MLSTFeaturesComparator.py sha256=VHP7gLz0vi6r6knIuGQFfmSeKOr_SB82Jv-qirKketc 63356
genomics_data_index/test/integration/api/query/features/test_MutationFromIndexFeaturesComparator.py sha256=tozhPSnJkzGTgOeL3lP6LcaMQtu95sjtnECs8xKcNkE 87052
genomics_data_index/test/integration/configuration/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/integration/configuration/test_Project.py sha256=wXobsMYfkf3WLTAF6p5JdfZeeykhStfoZLdLgieiTLw 1879
genomics_data_index/test/integration/configuration/connector/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/integration/configuration/connector/test_DataIndexConnection.py sha256=IREyIlac7Owiolj8en1RUjYdBDrlZ91ufVHNBnG9VTU 2022
genomics_data_index/test/integration/data/consensus/SampleA-consensus-nomask.fasta.gz sha256=mO2DyZr8cQYAUolOccwbVQtEKbOTfsR4YIZvvidwiP0 1779
genomics_data_index/test/integration/data/consensus/SampleA-consensus-withmask-over-mutation.fasta.gz sha256=OP39V-rLG5ih3RE9Cnzd43afgNecZwSVvzSAmZ-Yr-E 1789
genomics_data_index/test/integration/data/consensus/SampleA-consensus-withmask.fasta.gz sha256=xHSk-z6pfJwlafEOhnrmfICJGWTOlE5PATw150Ch7-U 1775
genomics_data_index/test/integration/data/empty_vcfs/SampleA/snps.aligned.fa sha256=Uc8SQXj3duP2TaQOnyFaBd3y_jWRNVG2wEk8QT4jVpo 5278
genomics_data_index/test/integration/data/empty_vcfs/SampleA/snps.vcf.gz sha256=5cpi3UImWCjTr6Ui6EvZx2NNzIT7CU3ajnuBphiKxfo 986
genomics_data_index/test/integration/data/extra-snippy-samples/SampleB-empty.snps.fill-tags.vcf.gz sha256=XqGNByLJZof2ZQTpVXAkHuld6UrrBPNgA6TzzdBl8I0 1079
genomics_data_index/test/integration/data/extra-snippy-samples/SampleB-empty.snps.fill-tags.vcf.gz.csi sha256=rZImhHmL9yor7yeUcVciutcFBhpAti8YDKEqu63n_So 79
genomics_data_index/test/integration/data/extra-snippy-samples/SampleB2.snps.fill-tags.vcf.gz sha256=7fLGZv5wKFRkbhlCoNzWa9HIHpbhE51I8sIEpSbFwnc 2429
genomics_data_index/test/integration/data/extra-snippy-samples/SampleB2.snps.fill-tags.vcf.gz.csi sha256=Tz6TuXPbq7STSWFQ1eELCrY5SWvViWe-oPHP_e_Al5w 121
genomics_data_index/test/integration/data/extra-snippy-samples/SampleB3.snps.fill-tags.vcf.gz sha256=zS4v0-_kSR4iJSaGatvpHd26EyFqfF8tsD6TQYal-8o 2136
genomics_data_index/test/integration/data/extra-snippy-samples/SampleB3.snps.fill-tags.vcf.gz.csi sha256=Hb01dnbDGp6nF_JUp1NeAy4JMjy87cDEwt6VcVQDILE 121
genomics_data_index/test/integration/data/extra-snippy-samples/SampleB4.snps.fill-tags.vcf.gz sha256=ci5rSP-tDRoE1L_AjCxPY59yTAweYMPVXZjvpjQhQ5Y 1598
genomics_data_index/test/integration/data/extra-snippy-samples/SampleB4.snps.fill-tags.vcf.gz.csi sha256=goT-RTOYe9IZ6LOj7qm5TYPGpzx5Oa0-V-WQXIOwu0c 121
genomics_data_index/test/integration/data/extra-snippy-samples/SampleB5-different-allele-ambiguous.vcf.gz sha256=MEi-t3-_qi50cGjkleQBMXd0oUNWnOR54kw6G7sPJJI 1451
genomics_data_index/test/integration/data/extra-snippy-samples/SampleB5-different-allele-ambiguous.vcf.gz.csi sha256=MUMncomthT7S0yD-UDtMLl2NWj4Q-sFQhHvSrZxOvNk 121
genomics_data_index/test/integration/data/extra-snippy-samples/SampleB5-different-allele.fill-tags.vcf.gz sha256=SY1qb_ODibOyVoo34tWDrHbTgMIuIAkRrkiikjPa16Y 1450
genomics_data_index/test/integration/data/extra-snippy-samples/SampleB5-different-allele.fill-tags.vcf.gz.csi sha256=7m7MsnECPiJH5acfqrqrhOISJxrnMccYAb4xxiHKAjQ 121
genomics_data_index/test/integration/data/extra-snippy-samples/SampleB5.snps.fill-tags.vcf.gz sha256=p44Wy7RwfanzI0ca--ui1eAAuynJ39InZA7tN8lyuOI 1450
genomics_data_index/test/integration/data/extra-snippy-samples/SampleB5.snps.fill-tags.vcf.gz.csi sha256=7m7MsnECPiJH5acfqrqrhOISJxrnMccYAb4xxiHKAjQ 121
genomics_data_index/test/integration/data/mlst/mlst-basic.tsv sha256=x435n8-tZgHoHpzqTbo6BvMBEhzC-V3_UpakM1apD_A 530
genomics_data_index/test/integration/data/mlst/mlst-chewbbaca-small.tsv sha256=VYhlNFAG5W0ZYXs3SF5NGCKk28zsQM4Y-90Y3yXbBUI 513
genomics_data_index/test/integration/data/mlst/mlst-single-scheme.tsv sha256=72PYtpRKMUx-0UG7CZufBW6ZZI9r7RFFZGSDZ5jffdc 186
genomics_data_index/test/integration/data/mlst/mlst-single-scheme2.tsv sha256=eOOOgLC8fAhNebuk4DVJW2GvYB7f0TjqJSQowBvXJvI 196
genomics_data_index/test/integration/data/mlst/mlst-single-scheme3.tsv sha256=pc5c5zKw_G4c95IYmN3Te9DmpqOEKt8qOIMI2-B9Grc 190
genomics_data_index/test/integration/data/mlst/mlst-sistr.csv sha256=wzJcMBH4AwTsKd9YZXkQGoZVc8o5tZkVPihi6e6KF7Y 14150
genomics_data_index/test/integration/data/mlst/mlst-snippy-data.csv sha256=2DgPNQEnBBzILlHRiOErRJj8ihuqdbNJO83VYCM210E 243
genomics_data_index/test/integration/data/mlst/mlst-unknown.tsv sha256=46GU4PYaomSD4uyDwq8PLN3C68mCDsVUNFycftGx8LE 364
genomics_data_index/test/integration/data/regular-vcf/SampleA.vcf.gz sha256=rPApVIHpNYdaRJD_Vd4moI-utmNnNK1DYsS1i5icAy4 1313
genomics_data_index/test/integration/data/regular-vcf/SampleB.vcf.gz sha256=-QP1SedL0fPoPS6diwiPa5uTQDlEUestXlKeBktl6xU 1395
genomics_data_index/test/integration/data/regular-vcf/SampleC.vcf.gz sha256=EKN7sq4idROaGBtKWSymQk75FgOjgxcMcHDsh_VkuOU 1174
genomics_data_index/test/integration/data/snippy/README.md sha256=Vlc7CIzZ2mMAfcx--9gPx7RiW6u0ckRO6QXm1svjf04 1590
genomics_data_index/test/integration/data/snippy/features_in_A_not_BC.txt sha256=sHbck1uyVfbW0UKNwNyKEfN9Vpk3kw4E-o_NxVu37ag 919
genomics_data_index/test/integration/data/snippy/features_in_BC_not_A.txt sha256=5VbunqLfxdmk3Y7YyQKFmkYVRU4-Rzzl8oO4xfcYfoM 1351
genomics_data_index/test/integration/data/snippy/genome.fasta.bz2 sha256=uOt7qXBwx_OfulEeqb7DfrmwwqE-31cCRL5WySKHTIk 1599
genomics_data_index/test/integration/data/snippy/genome.fasta.gz sha256=Fn1VG_bI0DomHkEiGBA71w7d9kFWyQpQN_sZbj-4ciM 1761
genomics_data_index/test/integration/data/snippy/genome.fasta.xz sha256=GQuto0hHH4JmZ55b63-u1kZckgUg-DneatdaPPbp09Q 1792
genomics_data_index/test/integration/data/snippy/missing-all.bed.gz sha256=tXf6DJkMdjKUcyd1_S1ITHPP0pnWvBOb5sB6RwoKwqQ 150
genomics_data_index/test/integration/data/snippy/missing-any-AB.bed.gz sha256=iz5gc3e5DLE60c4DlvPSXFmYtLBJTKXnfCkxlAwy73A 134
genomics_data_index/test/integration/data/snippy/missing-any-BC.bed.gz sha256=mdWDKmTYAHbQhTRsbHg4qDk1DkIY2yp8lcYhB8S8MpU 109
genomics_data_index/test/integration/data/snippy/missing-both-AB.bed.gz sha256=rwbOWvDlFAYqYT0gixGNTIZOivznozotv6_kD4yWozg 93
genomics_data_index/test/integration/data/snippy/missing-both-AC.bed.gz sha256=alEDAZ8USWmi0Y0yX6mBcboAhqF3SWGZvIq03NAiFbU 76
genomics_data_index/test/integration/data/snippy/missing-both-BC.bed.gz sha256=rwbOWvDlFAYqYT0gixGNTIZOivznozotv6_kD4yWozg 93
genomics_data_index/test/integration/data/snippy/position-in-beds.py sha256=FShyBNrkGL4PZYAzRat_4yaBKUjKyeKdRhAqicsoJg8 825
genomics_data_index/test/integration/data/snippy/print-length-bed.py sha256=2VgRqibL3t0I8C0sj6DeMY8v0Q7Ca08mdoxkJIqvlA8 300
genomics_data_index/test/integration/data/snippy/print-nucleotide-position.py sha256=jni8xDCI6faLnooAVTMJeIPDRcxWi6T6_0zKfWT8wso 620
genomics_data_index/test/integration/data/snippy/print-positions-bed.py sha256=pKsBYigdpBIcAcYq7jLsEnkCL4M8SPd_E_TzD3pqMoA 411
genomics_data_index/test/integration/data/snippy/print-unknown-missing.py sha256=G-y0rRjmYxZ43L0EHfGQFzQr2p8iEed5tgF3T_ryR3w 510
genomics_data_index/test/integration/data/snippy/sequence_vcf_to_mask.py sha256=B51FYOj_v3MB4T5ZMXUOhhgPVNI6qc0eJhpcoM1GY78 952
genomics_data_index/test/integration/data/snippy/snippy.core.aln sha256=ywX3saD0EQwhaS9yRjdEhJbRfUTFo9nxpt4gxrI_ONY 282
genomics_data_index/test/integration/data/snippy/snippy.full.aln sha256=q9kb19NebbhnUy0A_Sh45k1f8Mh7UnI7vBPIk668Wpk 21106
genomics_data_index/test/integration/data/snippy/tree.tre sha256=cGhj-SRpy0hbB723jHsR30kBtGwD7gZ3Yr73KUwEPmc 46
genomics_data_index/test/integration/data/snippy/SampleA/mutations-dataframe.all.tsv sha256=kTM38pTp4avqXvOJdi-5l0856J1xfrqbHNsVnPO7kjU 2113
genomics_data_index/test/integration/data/snippy/SampleA/mutations-dataframe.snps.tsv sha256=JP_-lEYmLxfFsa40YzP3DMc69Wc4CcTKCnhYVH5nzVM 1133
genomics_data_index/test/integration/data/snippy/SampleA/snps.aligned.bed.gz sha256=E5yGqEtkbPbL_EZdUqOphrx82VEN2IygzrqRqqx0wmU 179
genomics_data_index/test/integration/data/snippy/SampleA/snps.aligned.fa sha256=Uc8SQXj3duP2TaQOnyFaBd3y_jWRNVG2wEk8QT4jVpo 5278
genomics_data_index/test/integration/data/snippy/SampleA/snps.aligned.minus-vcf.bed.gz sha256=kbsmZ6a4N4GgjMs8YAUVsolGtYn6ZZA4wjg1RbjSZJ0 154
genomics_data_index/test/integration/data/snippy/SampleA/snps.aligned.nogap.fa.gz sha256=ZF2zQIdntV-LwvlGinAd9ELS4v5-V2UoNI-ArKObFKw 1696
genomics_data_index/test/integration/data/snippy/SampleA/snps.fill-tags.vcf.gz sha256=02011iR6du5gf14SArE5Ebs5h6uqYfErHzpvBTJrS4A 2787
genomics_data_index/test/integration/data/snippy/SampleA/snps.fill-tags.vcf.gz.csi sha256=BA1bqKaH3ll_jO-5pn2d_qbRis7ifxEJSrFZnp1fX0U 120
genomics_data_index/test/integration/data/snippy/SampleA/snps.vcf.gz sha256=wcVGovlf7rhx4iD6HhWvhZ3HEZAYFgLNP4EYaCmN5Ks 2725
genomics_data_index/test/integration/data/snippy/SampleA/snps.vcf.gz.csi sha256=xnEN5EkyCDoenqzyd-KtuHkPbWBcVZw4Huw0a6NWYA8 122
genomics_data_index/test/integration/data/snippy/SampleB/mutations-dataframe.all.tsv sha256=YXQk-9xA7eEuGP4G6O1MEEVNSlpeudQ_283_WZOCUo8 2333
genomics_data_index/test/integration/data/snippy/SampleB/mutations-dataframe.snps.tsv sha256=drFUqOu4NjCqIvkwz_11VhVPrRSqbxhqowE9UJl1JZI 1175
genomics_data_index/test/integration/data/snippy/SampleB/snps.aligned.bed.gz sha256=RJJhdbg0ma2e7g9BxCiCkbZitlnUtiFCQWptGrdJrXI 182
genomics_data_index/test/integration/data/snippy/SampleB/snps.aligned.fa sha256=Lm1O60xmPwF01DcIMuAhXPwjnRWpdslc51z3Dvw8Cr4 5278
genomics_data_index/test/integration/data/snippy/SampleB/snps.aligned.minus-vcf.bed.gz sha256=IWmoakr7VMtUrxmz_-Ii6uzvEkxeqZI_IH5jeWk0xMs 143
genomics_data_index/test/integration/data/snippy/SampleB/snps.aligned.nogap.fa.gz sha256=bVhKe3k3G6KP2WfVtsm0qYk3qUMByPcSyAvAKdku3EQ 1742
genomics_data_index/test/integration/data/snippy/SampleB/snps.fill-tags.vcf.gz sha256=wx1TczclwDByhFnZs-4x4m3B_YIn_cHOq9jl44gvmJE 2959
genomics_data_index/test/integration/data/snippy/SampleB/snps.fill-tags.vcf.gz.csi sha256=9GYJRj_mMBvqxdrTMsL6PzWmsj9fp33T22fZV3Uts0U 121
genomics_data_index/test/integration/data/snippy/SampleB/snps.vcf.gz sha256=7TgZCZcnTux5bnFsAHw1tktTezUPqK9ynHOOqEkBhSg 2892
genomics_data_index/test/integration/data/snippy/SampleB/snps.vcf.gz.csi sha256=bLTx_6mM-bZWBoB9WwU479AnCJ7M5SQDnASSfPkz0q0 122
genomics_data_index/test/integration/data/snippy/SampleC/mutations-dataframe.all.tsv sha256=OJA8Og6r6CA2ZJofq0JjGsCDPJkhHO53ZZE-V9O8Jeg 1565
genomics_data_index/test/integration/data/snippy/SampleC/mutations-dataframe.snps.tsv sha256=AH_WBnGqDy-5R32xYVdh5T6eQgax_G_o64NGPQpEBIg 761
genomics_data_index/test/integration/data/snippy/SampleC/snps.aligned.bed.gz sha256=tnM2bV96gn5AhgOBkP-aWtirSsEV0aeIPfvW4vAY920 162
genomics_data_index/test/integration/data/snippy/SampleC/snps.aligned.fa sha256=pJRNSk33YPvv9Z_9BphvNwXHQhNV2o04mBscFcPErlI 5278
genomics_data_index/test/integration/data/snippy/SampleC/snps.aligned.minus-vcf.bed.gz sha256=ZKQ8o5ErAOEK4Bvf3q4ZHrOEROebH_EbjECNWG4bF38 126
genomics_data_index/test/integration/data/snippy/SampleC/snps.aligned.nogap.fa.gz sha256=CbTHw1bHntWld4bi0RLGXMFsMrmFK1wkF0T7psGR8-I 1723
genomics_data_index/test/integration/data/snippy/SampleC/snps.fill-tags.vcf.gz sha256=jmEWxukDUOFVzAXt543tZ0c5NH6NbqVE7UXrBdEStBQ 2410
genomics_data_index/test/integration/data/snippy/SampleC/snps.fill-tags.vcf.gz.csi sha256=BNMpEwXiOZ4RGxkRWGho1Kunu2hsfNwijJn_c4IUusQ 121
genomics_data_index/test/integration/data/snippy/SampleC/snps.vcf.gz sha256=_JL8Jg4x5K5PjXe-6zhRiDxMyMJl-IYPvAJryzgBdEw 2346
genomics_data_index/test/integration/data/snippy/SampleC/snps.vcf.gz.csi sha256=TpF-0qU0LdDL7Ze-8SM8UXlV5OFZBaJ3a7O4vQjcqks 121
genomics_data_index/test/integration/data/snpeff-database/NC_011083-5000.gbk.gz sha256=VJM_El6ivAsn31-GWEb7XQeX2gNs26gK5SzEYR5X72I 5798
genomics_data_index/test/integration/data/snpeff-database/NC_011083_CP001602-5000.gbk.gz sha256=hDIpPD_JoBR772_rf0qSynOWIfuP8DfipaZAF9QzRWI 10555
genomics_data_index/test/integration/data/snpeff-database/README.md sha256=0RO13SsfDFSsSMO9JWV-rk378t0Fi_xopjkcvVQeCPk 571
genomics_data_index/test/integration/data/snpeff-database/SampleA.vcf.gz sha256=-Lqg5ojurRU-e3nhvhLOzKm4lNVg08We1ENSudA1yrA 1176
genomics_data_index/test/integration/data/snpeff-database/ref.fasta.gz sha256=X-RqIyd2dOTTA-e3as3qEtMT24EB4pr7V5QEIMcS-Zc 1811
genomics_data_index/test/integration/data/snpeff-database/input/SampleA.fasta.gz sha256=15Rn--8ykeeyeqxmWSKOCFlaYF3yS5fT43WgUW4Wi5Q 1771
genomics_data_index/test/integration/data/snpeff-vcf/NC_011083.fasta.gz sha256=oQR776uDWQimiXCWV4VryWONV3lEv595dBzYvD754mI 1470533
genomics_data_index/test/integration/data/snpeff-vcf/README.md sha256=kBTcdcxA4U5jgEgU4A3QOwpk5HdBBLj7ZYl37KEt6e8 1297
genomics_data_index/test/integration/data/snpeff-vcf/SH10-014-dup-gene-variant-2.vcf.gz sha256=rTiTYs_V_4eaRFASye086nl8jE_MlLgluDaNqo1pmL4 1807
genomics_data_index/test/integration/data/snpeff-vcf/SH10-014-dup-gene-variant.vcf.gz sha256=u_zKtuhBeVXzJmmbXBv6tmuxiaqsiSyV-0RGOsT_dkY 1987
genomics_data_index/test/integration/data/snpeff-vcf/SH10-014.bed.gz sha256=Hd3AJB-BsdyQ4gORh1FjRVOwATf86G6oKd4IVQqd_-g 95
genomics_data_index/test/integration/data/snpeff-vcf/SH10-014.vcf.gz sha256=M7N7eCJ6g-y25iHylR-AMb6dpWpr1U_dhimUy1KlenM 35620
genomics_data_index/test/integration/data/snpeff-vcf/SH14-001.bed.gz sha256=odSh1gnMOi0-CBzFZELgvcKdRn-DWm9uOryhGcG_xIw 115
genomics_data_index/test/integration/data/snpeff-vcf/SH14-001.vcf.gz sha256=23xnJB96wY-Tpob9CpcbH7WOzEfewfXzAlfGFqQgJ9g 30418
genomics_data_index/test/integration/data/snpeff-vcf/SH14-014.bed.gz sha256=_rhrEpKCQnc5GBt4_dt2ohrBl0Y0lGb0CF09dwoduBs 129
genomics_data_index/test/integration/data/snpeff-vcf/SH14-014.vcf.gz sha256=dZ0QKZlUHEKiDguTRaNp_CIQiZzWLz3XI5cNORpPRgM 28931
genomics_data_index/test/integration/data/snpeff-vcf/USA__CA-CDPH-3000143037__2021.noann.vcf.gz sha256=j3xWqAOFCHPKQlTqlEAZIJ8Lj5tuQMA74AkCEtu3L-I 1948
genomics_data_index/test/integration/data/snpeff-vcf/USA__CA-CDPH-3000143037__2021.vcf.gz sha256=_JEIvc2Rc104LrQMdObE8uS0Jz9ePFyrR5J8Tpj6Rws 3482
genomics_data_index/test/integration/data/snpeff-vcf/sh10-uniq.txt sha256=H9a_aFTgDYPWuDMJrFboBJF7WOsqUB3Y5hYr_4EJN00 1377
genomics_data_index/test/integration/data/snpeff-vcf/tree.txt sha256=eZfjtrJhzSeGla5iOduX0xGZrTNsb6aW3f5MVRVm_F8 99
genomics_data_index/test/integration/data/sourmash/README.md sha256=bzIceDPqbjbJ9Aax8xQv1qHAnDvmPVt9LWMoziHYBvg 177
genomics_data_index/test/integration/data/sourmash/SampleA.sig.gz sha256=6KRq8kYHL1eZkQ8zgZhQ9UJ7Rf2tw8eEODH1lbsbSuQ 12983
genomics_data_index/test/integration/data/sourmash/SampleB.sig.gz sha256=yp00ubuhLi8O-rN6bn182lUQVeRK1DsZQdNNNgevaG4 13254
genomics_data_index/test/integration/data/sourmash/SampleC.sig.gz sha256=m4dTdpLhAgULK_cHzv-UlBkIMuWwanLs3T8U-WB2qf0 13266
genomics_data_index/test/integration/data/test_project_dir/gdi-config.yaml sha256=Mr0tAmjxVRI_Ar2cq14zuMFNpy3SX1yQN2Vldy_4r0o 73
genomics_data_index/test/integration/data/test_project_dir/.gdi-data/gdi-db.sqlite sha256=Spal3_IWNwEDdyym8soKBYoNlpPsylkbXSTaIRlFKds 57344
genomics_data_index/test/integration/data/variation/SampleA-mask-over-mutation.bed.gz sha256=R20kxJU4NeDi25lV-NZmD-JD0zwUGH_IYLWpw4HBgDs 86
genomics_data_index/test/integration/data/variation/SampleA.bcf sha256=asS8SPzBoER-WsYwnuUh2_DR9CEPsdp8Z0IMa7gKmfY 2818
genomics_data_index/test/integration/data/variation/SampleA.bcf.csi sha256=Ha9odY_vVW_ek8aDNITPy5ytTCW_cGxs4J0txcZt7d4 89
genomics_data_index/test/integration/data/variation/SampleA.bed.gz sha256=LX6yZ5w7SmBtghv3-HXhxuww8-t4HGKbPM6Yp6zHv54 59
genomics_data_index/test/integration/data/variation/SampleA.vcf.gz sha256=pTzpsV3bh4P9m-R7ZFKzewnXdQcsVk5ELCNVpoKJbqI 2808
genomics_data_index/test/integration/pipelines/__init__.py sha256=z6YJKMNN77yvvdsfQYqR6Qe_9pi03OB3UvLvsRW2WRY 1236
genomics_data_index/test/integration/pipelines/test_SnakemakePipelineExecutor.py sha256=X2MtSooZOdfq1G_n56fqFutm903DFNGzQZq6xkQKpG0 32262
genomics_data_index/test/integration/pipelines/data/assemblies/README.md sha256=X2nUyYD1iqQPAAMM-_7c4YxzUJnU4524Ie1-NzZZ5UM 439
genomics_data_index/test/integration/pipelines/data/assemblies/genome.fasta sha256=Pwe1wxiQREbVESnypGov_FJnF0IcedOm-k8uvPjls9M 5278
genomics_data_index/test/integration/pipelines/data/assemblies/expected/SampleA-mutations.txt sha256=UV21sesDoRUxRymJkmVr1h4sJm-kPCKpKVRfyrLRgfs 507
genomics_data_index/test/integration/pipelines/data/assemblies/expected/SampleB-mutations.txt sha256=yZV89KDoajATxKD3o_XJwd9bcJ3zhFhvufzhkv0mR5s 527
genomics_data_index/test/integration/pipelines/data/assemblies/expected/SampleC-mutations.txt sha256=pCKOuuwGryG8SpbNGgSaMpEHiUL8RPP1X907kMoSNP8 340
genomics_data_index/test/integration/pipelines/data/assemblies/expected/SampleD-mutations.txt sha256=1pl8q3knb8J4fj2RpBK013mhJgYdG_eVcTMaAdggxEk 471
genomics_data_index/test/integration/pipelines/data/assemblies/expected/SampleD.bed.gz sha256=P-RoX0mvtJjqn8kh64h_sWIQCuDRLgsqSQvpfBGlifE 48
genomics_data_index/test/integration/pipelines/data/assemblies/expected/SampleE-mutations.txt sha256=ywix6Tma_bZdblQKGcu1cgUFXDlCvl7rAJfqKO03kWs 432
genomics_data_index/test/integration/pipelines/data/assemblies/expected/SampleE.bed.gz sha256=onGYLKNH3cGhi6US7AEMhXOHh7Ij-4VHP30bbi_hT1Y 52
genomics_data_index/test/integration/pipelines/data/assemblies/expected/SampleF-mutations.txt sha256=j0p-JSh5psYxER2MHSiK21YpTKFQC9Q2NSgMd7NBWK8 245
genomics_data_index/test/integration/pipelines/data/assemblies/expected/SampleF.bed.gz sha256=d7qN9_r8wmrAYa2iQNGVhJGhTPAwVW19ndqL5IxldyE 52
genomics_data_index/test/integration/pipelines/data/assemblies/expected/SampleH-mutations.txt sha256=euMjVD9viIlE8XDDXYpnCWcOvHzN6Y6FKgNjrOeCTbE 21
genomics_data_index/test/integration/pipelines/data/assemblies/expected/SampleH.bed.gz sha256=zhfEQmS3Vnchqy6_TgarCcgNsFroZyfb5HvIANIziAI 80
genomics_data_index/test/integration/pipelines/data/assemblies/expected/empty.bed.gz sha256=EBALizrDlQ-cfvUuR9rjAgId2qXBtTNww7h9xXqCfkI 30
genomics_data_index/test/integration/pipelines/data/assemblies/samples/SampleA.fasta sha256=18TWMDouyEj2aC1QtATyV1qhbQAiClr8Yx2KoxbZMAY 5278
genomics_data_index/test/integration/pipelines/data/assemblies/samples/SampleB.fasta sha256=W7G2QU8LJ4dcBQykqqEL8Nm6PvR6e7CY001x-5fFrxM 5278
genomics_data_index/test/integration/pipelines/data/assemblies/samples/SampleC.fasta sha256=P8T-lUWRPnKWWn9sl51QRVv4o5XLUHxTBalUCNVBzVE 5278
genomics_data_index/test/integration/pipelines/data/assemblies/samples/SampleD.fasta sha256=zyTd5uDFvMNQxbjit1MRSH1hlC-UnQYivmMjUITB-Ls 5278
genomics_data_index/test/integration/pipelines/data/assemblies/samples/SampleE.fasta sha256=sLdHZY50W1RpEC_4V5UNUlRzhTN2sVAKWOCoCbvXtAQ 5278
genomics_data_index/test/integration/pipelines/data/assemblies/samples/SampleF.fasta sha256=eu7tZll7YSntdw79B25_AzcAerweCzAPCz-REQCqJBg 5278
genomics_data_index/test/integration/pipelines/data/assemblies/samples/SampleH.fasta sha256=lAoAppg-4fRQz-Hbxys_fgZ_ql0FNdsvHzKByawk8cA 5286
genomics_data_index/test/integration/pipelines/data/reads/SampleA-single-snpeff.fastq.gz sha256=5jt-hQi5ysUjD0iX9fN1k4Kf4EoYBgHQ69sKUA42s9Q 31343
genomics_data_index/test/integration/pipelines/data/reads/SampleA-snpeff_1.fastq.gz sha256=5jt-hQi5ysUjD0iX9fN1k4Kf4EoYBgHQ69sKUA42s9Q 31343
genomics_data_index/test/integration/pipelines/data/reads/SampleA-snpeff_2.fastq.gz sha256=ldFEM1dpghFdYAo9fxKJVD28-ElGoqeOEUpsdMT7pME 41557
genomics_data_index/test/integration/storage/__init__.py sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs 1
genomics_data_index/test/integration/storage/index/__init__.py sha256=TXgtpagazom_8OMmfC9i7C6Y2Casj1R0RKzjD6sViKc 305
genomics_data_index/test/integration/storage/index/test_KmerIndexManager.py sha256=4leqFWEiVwCHk2vAkL7wCRF8w5DtK2oZ3Nnxdpok4mo 1463
genomics_data_index/test/integration/storage/index/test_KmerIndexer.py sha256=nD3QeFaSa7_Wv3hGmWsm9P_Tz-NYYkA_hn4j_8VsVjs 2269
genomics_data_index/test/integration/storage/index/test_KmerSearchManager.py sha256=i7GKoxM195wRXFlY2CvWLBMeBwJnezllIxT_PFcIEGQ 4533
genomics_data_index/test/integration/storage/io/__init__.py sha256=FMJC89SW7QK1elWwtl0zaXDF4OtJCD9BKG3gSwHQBgk 306
genomics_data_index/test/integration/storage/io/test_MLSTChewbbacaReader.py sha256=qzuFeo8U9LpYawUyLXzJSPhc7gX6oCnG36SlYxFN1t8 1985
genomics_data_index/test/integration/storage/io/test_MLSTSampleDataPackage.py sha256=La66JNaS_DMCdlTy_l-t4gZtcJZY5zc-vLu5R0sDNA0 1697
genomics_data_index/test/integration/storage/io/test_MLSTSistrReader.py sha256=WsnsE_qxcicuVJ-y-Lu-tS8FQqf-zALzIIf_r9A0C4Y 2586
genomics_data_index/test/integration/storage/io/test_MLSTTSeemannFeaturesReader.py sha256=CrDgTmfJU4VsMhwoKIlyyRDya4XOEaaTM9hatVwFb10 5100
genomics_data_index/test/integration/storage/io/test_VcfVariantsReader.py sha256=ylRwK2mE1WKknfAd1oY2lxCf2Km_eqS7oisjs1OfXYQ 27682
genomics_data_index/test/integration/storage/io/mutation/__init__.py sha256=9X2unQO5WXUtiI4Q0hld2NC4XbWnM7IrrbkhmY1Ck7E 1353
genomics_data_index/test/integration/storage/io/mutation/conftest.py sha256=74LiGxa1WGqyJlxJfjk4V3mvuCneBaYzuOY8CuMOdWc 504
genomics_data_index/test/integration/storage/io/mutation/test_NucleotideSampleData.py sha256=qiYEVyCGPfSaRnbuoZFotFSTOlkRL8DimA3NegDwavI 7286
genomics_data_index/test/integration/storage/io/mutation/test_NucleotideSampleDataBedMask.py sha256=FibVcFLhSLJwxMoerRAOVkTcLIWKLRCRk266u0yFxek 3056
genomics_data_index/test/integration/storage/io/mutation/test_NucleotideSampleDataPackage.py sha256=3egwfAd87nssVnTU0xRXQdU-Uxx_ot9s_zP2AoLJqTM 19571
genomics_data_index/test/integration/storage/io/mutation/test_NucleotideSampleDataPackageFactory.py sha256=6zIFlPtk9ZV1DBy3h8RXa3SAcMXvHfze0NB53b6YCXE 17160
genomics_data_index/test/integration/storage/io/mutation/test_NucleotideSampleDataSequenceMask.py sha256=BLqNiKvDQGFAdZc03zJFUdhov2-HVEX8vPkD97GsvKg 10689
genomics_data_index/test/integration/storage/io/mutation/test_SequenceFile.py sha256=QEb9OCV8Q7g7vM-ewwmro3fAQvjkEYmqCAeoDj9LWxs 7466
genomics_data_index/test/integration/storage/io/mutation/test_SnpEffDatabase.py sha256=PpTe4rC46yGAc_mew_9hB-tmdL6NFK-BkV9icJU5oiI 1725
genomics_data_index/test/integration/storage/io/mutation/test_VariationFile.py sha256=zkH0MA7dmJxmGuGjvu7ieHhyvoc3EUAb0JNIr6z48lE 34427
genomics_data_index/test/integration/storage/service/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/integration/storage/service/conftest.py sha256=av6bOqY9MNtUohU4QhVCoIvaOeBAEqYdh1jpyDXc1sU 17156
genomics_data_index/test/integration/storage/service/test_CoreAlignmentService.py sha256=rDoHnErJiBkLMXbMYS4793fp6-RKhctoCX5idvuTDUk 17148
genomics_data_index/test/integration/storage/service/test_DatabaseConnection.py sha256=L43pU7N-QofZ5om4QgoB-Gs2SDlsxwrESH25ojv_ZNo 6876
genomics_data_index/test/integration/storage/service/test_KmerService.py sha256=8U3GAjWOrwaDA5XuMKJdU5Tba-eQl7mA2d_66FTdBYg 8832
genomics_data_index/test/integration/storage/service/test_MLSTService.py sha256=X-OD6Li3t5pdl0Z6l5bBAylJE98Yc3byYN0zKMHs-v0 21467
genomics_data_index/test/integration/storage/service/test_ReferenceService.py sha256=KONN6uS-w7qDFzL75HbZ8spOcjchzpyDGVvA86iCv8E 7817
genomics_data_index/test/integration/storage/service/test_SampleService.py sha256=YOcW7eAsF9eY1dXjqFtvh2EVSBWsqdsKosRYixOvdYc 61621
genomics_data_index/test/integration/storage/service/test_TreeService.py sha256=WwPwXjRESG9_Q_j-H9vpRfrb3rOM2URhXnXL9FaJ95U 3701
genomics_data_index/test/integration/storage/service/test_VariationService.py sha256=8AgZvBk-eXVw5uEnDaD4pyBKWTNXgZgns-PJ8_W8KXg 63111
genomics_data_index/test/unit/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/unit/api/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/unit/api/query/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/unit/api/query/kind/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/unit/api/query/kind/test_ExperimentalSARSCov2ConstellationsTyper.py sha256=LPRKZC9FrC82A5a1T5Jcd0kZl52ghyYIcg7FobnDJRo 1515
genomics_data_index/test/unit/data/NC_045512.2.gb.gz sha256=Iu8q3ko3owzw24Y-YtXBDRg0yb5kTj_23RON2-3A4fc 24244
genomics_data_index/test/unit/variant/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/unit/variant/test_MaskedGenomicRegions.py sha256=txpEUjstVdt6OHxn2AM3JbWXDVxYEfXBuRLYHTYBjcg 18383
genomics_data_index/test/unit/variant/test_SampleSet.py sha256=FP0aZirFbeju7Nee642AAvISoxLcS_-8zpsTqOFubAE 8656
genomics_data_index/test/unit/variant/data/snps-for-mask.vcf.gz sha256=ERQRvkYp4ELp6yUk5dQcBqqrUc1LDYYKCrwBmUbYUC8 1325
genomics_data_index/test/unit/variant/io/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/unit/variant/io/test_MLSTSampleData.py sha256=UspQnkZ-SLCDoaqJyY0ez4IAt-yrX2RVFCnlkrCdGK0 658
genomics_data_index/test/unit/variant/io/mutation/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/unit/variant/io/mutation/test_NucleotideSampleData.py sha256=1ibHxsywciSqvh-mZdjjTSbvBuNavIx2va-JknrDlDA 9465
genomics_data_index/test/unit/variant/io/mutation/test_SequenceFile.py sha256=P8S3_9cX1mHV1l6sDVxBVolXiZvgOBEP1VtLIk3YHhE 4872
genomics_data_index/test/unit/variant/io/mutation/test_VcfSnpEffAnnotationParser.py sha256=GYmP1Qz5McSPnKpnsSE6Gt6Ko8KDFPBY1U8h8xqedEw 34744
genomics_data_index/test/unit/variant/model/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/unit/variant/model/test_NucleotideMutationTranslater.py sha256=ct24dhFR_5KHsiCS-8WuZS97ZwmY7ZCn9gNd3yi0Uxc 5533
genomics_data_index/test/unit/variant/model/test_QueryFeatureFactory.py sha256=Fno1Q435WSPknjOk8E_5rlFfCICxpTSkdM6waaDC3Ws 5293
genomics_data_index/test/unit/variant/model/test_QueryFeatureHGVS.py sha256=jKtNDEZTOwYRBi3iTUJLpvi1FGKm5Dv_gQ-ihGznzF8 3907
genomics_data_index/test/unit/variant/model/test_QueryFeatureHGVSGN.py sha256=4hOH4w7n_DnlGBdWtl3t1Zo5aRIpW9dPfKCnSSgoClM 2305
genomics_data_index/test/unit/variant/model/test_QueryFeatureMLST.py sha256=uCdPnrqN0AAcu8fLyuHZfsVP6qZJex2nqJe8blDp5VY 1430
genomics_data_index/test/unit/variant/model/test_QueryFeatureMutationSPDI.py sha256=ANcLCo-zauxGUzkO015jJTE2vMXYNWhXG6ysYVY4s-o 2283
genomics_data_index/test/unit/variant/model/db/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/unit/variant/model/db/test_DatabasePathTranslator.py sha256=EIYvb43GeqBINnLqqnZQqq_UaXvieSC4OM1oKxjgm-E 1807
genomics_data_index/test/unit/variant/model/db/test_MLSTAllelesSamples.py sha256=83sBAkhddWZcR7M78BCpH0L0wNyW7XPcer5R22SfK44 2640
genomics_data_index/test/unit/variant/model/db/test_NucleotideVariantsSamples.py sha256=PFQVHKiaNlTus8jzUtvi7Hp0kznEvhqRzeOk6oDSgP8 4684
genomics_data_index/test/unit/variant/pipelines/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/unit/variant/pipelines/test_SnakemakePipelineExecutor.py sha256=36t6zoh08g0Tx-XAoov22K_xcgzaTgf4OzU42Xhaaxs 17295
genomics_data_index/test/unit/variant/service/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/unit/variant/service/test_SQLQueryInBatcher.py sha256=C6xOpR_tE182K0QqBmGx3VphMpOuA1OzrLj2kF-F-2o 2422
genomics_data_index/test/unit/variant/util/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genomics_data_index/test/unit/variant/util/test_ListSliceIter.py sha256=cG1CZ-VT1Jh4qusYGaADA-aaNi1D-_P84fhn4Yp8ziA 1441
genomics_data_index-0.9.2.dist-info/LICENSE sha256=7sLm4E5Wue8emPsYXuAfP_ZdPsxe8AnB7BNwRrwIBCA 11326
genomics_data_index-0.9.2.dist-info/METADATA sha256=YWzZa20g4jjS9yWhR43_swMi-QaU3CurGg-Tg0CQ6p4 15377
genomics_data_index-0.9.2.dist-info/WHEEL sha256=2wepM1nk4DS4eFpYrW1TTqPcoGNfHhhO_i5m4cOimbo 92
genomics_data_index-0.9.2.dist-info/entry_points.txt sha256=tQfHk3rZgEiW64siKcHTDWhV8KfPdyKHNznp7Fp6Sb8 57
genomics_data_index-0.9.2.dist-info/top_level.txt sha256=POrJlLYV3zNC8obunPqfqZF_8gyga1kBSSGYVxgPt7o 20
genomics_data_index-0.9.2.dist-info/RECORD

top_level.txt

genomics_data_index

entry_points.txt

gdi = genomics_data_index.cli.gdi:main