gilda

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1.2.0 gilda-1.2.0-py3-none-any.whl

Wheel Details

Project: gilda
Version: 1.2.0
Filename: gilda-1.2.0-py3-none-any.whl
Download: [link]
Size: 181689
MD5: 98d350cccc9baa9f661c74feaeec0db2
SHA256: 0ed74847d4f52cea9d48e38aa32c431e787f905676c1a5e111a9f59ae20e9696
Uploaded: 2024-04-30 20:06:54 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: gilda
Version: 1.2.0
Summary: Grounding for biomedical entities with contextual disambiguation
Author: Benjamin M. Gyori, Harvard Medical School
Author-Email: benjamin_gyori[at]hms.harvard.edu
Home-Page: https://github.com/indralab/gilda
Keywords: nlp,biology
Classifier: Development Status :: 4 - Beta
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Requires-Dist: regex
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Provides-Extra: benchmarks
Provides-Extra: docs
Provides-Extra: terms
Provides-Extra: test
Provides-Extra: ui
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 7519 characters]

WHEEL

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Tag: py3-none-any

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gilda-1.2.0.dist-info/RECORD

top_level.txt

gilda

entry_points.txt

gilda = gilda.app:main