sourmash

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4.8.10 sourmash-4.8.10-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
sourmash-4.8.10-py3-none-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
sourmash-4.8.10-py3-none-win_amd64.whl
sourmash-4.8.10-py3-none-macosx_11_0_x86_64.whl
sourmash-4.8.10-py3-none-macosx_11_0_arm64.whl

Wheel Details

Project: sourmash
Version: 4.8.10
Filename: sourmash-4.8.10-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Download: [link]
Size: 2805549
MD5: 7260cf3e52276074e62fc99a2a08ce9d
SHA256: a93cebf4d0fde9c003ae441e471b4dc9345d8c9a5851c4df63a6e91540bfc39a
Uploaded: 2024-06-29 18:32:23 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: sourmash
Version: 4.8.10
Summary: tools for comparing biological sequences with k-mer sketches
Author: Luiz Irber, N. Tessa Pierce-Ward, Mohamed Abuelanin, Harriet Alexander, Abhishek Anant, Keya Barve, Colton Baumler, Olga Botvinnik, Phillip Brooks, Peter Cock, Daniel Dsouza, Jade Gardner, Laurent Gautier, Tim Head, Mahmudur Rahman Hera, Hannah Eve Houts, Lisa K. Johnson, Fabian Klötzl, David Koslicki, Katrin Leinweber, Marisa Lim, Ricky Lim, Bradley Nelson, Ivan Ogasawara, Taylor Reiter, Camille Scott, Andreas Sjödin, Connor T. Skennerton, Jason Stajich, Daniel Standage, S. Joshua Swamidass, Connor Tiffany, Pranathi Vemuri, Erik Young, Nick H, C. Titus Brown
Author-Email: Luiz Irber <luiz[at]sourmash.bio>, N. Tessa Pierce-Ward <tessa[at]sourmash.bio>
Maintainer-Email: "Luiz C. Irber, Jr" <luiz[at]sourmash.bio>, "C. Titus Brown" <titus[at]idyll.org>, "N. Tessa Pierce-Ward" <ntpierce[at]ucdavis.edu>
Project-Url: Homepage, https://sourmash.bio/
Project-Url: Documentation, https://sourmash.readthedocs.io
Project-Url: CI, https://github.com/sourmash-bio/sourmash/actions
Project-Url: Source, https://github.com/sourmash-bio/sourmash
Project-Url: Tracker, https://github.com/sourmash-bio/sourmash/issues
License: BSD-3-Clause
Keywords: minhash,bioinformatics
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Console
Classifier: Environment :: MacOS X
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Operating System :: POSIX :: Linux
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Programming Language :: Rust
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.10
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.10
Requires-Dist: screed (<2,>=1.1.3)
Requires-Dist: cffi (>=1.14.0)
Requires-Dist: numpy
Requires-Dist: matplotlib
Requires-Dist: scipy
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Requires-Dist: diff-cover (>=7.3); extra == "test"
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Requires-Dist: build; extra == "test"
Requires-Dist: jupyter; extra == "demo"
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Requires-Dist: ipfshttpclient (>=0.4.13); extra == "storage"
Requires-Dist: redis; extra == "storage"
Requires-Dist: sourmash[demo,doc,storage,test]; extra == "all"
Provides-Extra: test
Provides-Extra: demo
Provides-Extra: doc
Provides-Extra: storage
Provides-Extra: all
Description-Content-Type: text/markdown; charset=UTF-8; variant=GFM
License-File: LICENSE
[Description omitted; length: 5988 characters]

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entry_points.txt

sourmash = sourmash.__main__:main