sourmash

View on PyPIReverse Dependencies (19)

4.8.9 sourmash-4.8.9-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
sourmash-4.8.9-py3-none-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
sourmash-4.8.9-py3-none-win_amd64.whl
sourmash-4.8.9-py3-none-macosx_11_0_x86_64.whl
sourmash-4.8.9-py3-none-macosx_11_0_arm64.whl

Wheel Details

Project: sourmash
Version: 4.8.9
Filename: sourmash-4.8.9-py3-none-win_amd64.whl
Download: [link]
Size: 1924383
MD5: f5641d231a4e80046b68a3154b67eb6a
SHA256: ed7b322bce85f4a7d9d094441e3578d85e74425b9ce0fca236fa798eaf3ddc03
Uploaded: 2024-06-11 01:20:54 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: sourmash
Version: 4.8.9
Summary: tools for comparing biological sequences with k-mer sketches
Author: Luiz Irber, N. Tessa Pierce-Ward, Mohamed Abuelanin, Harriet Alexander, Abhishek Anant, Keya Barve, Colton Baumler, Olga Botvinnik, Phillip Brooks, Peter Cock, Daniel Dsouza, Jade Gardner, Laurent Gautier, Tim Head, Mahmudur Rahman Hera, Hannah Eve Houts, Lisa K. Johnson, Fabian Klötzl, David Koslicki, Katrin Leinweber, Marisa Lim, Ricky Lim, Bradley Nelson, Ivan Ogasawara, Taylor Reiter, Camille Scott, Andreas Sjödin, Connor T. Skennerton, Jason Stajich, Daniel Standage, S. Joshua Swamidass, Connor Tiffany, Pranathi Vemuri, Erik Young, Nick H, C. Titus Brown
Author-Email: Luiz Irber <luiz[at]sourmash.bio>, N. Tessa Pierce-Ward <tessa[at]sourmash.bio>
Maintainer-Email: "Luiz C. Irber, Jr" <luiz[at]sourmash.bio>, "C. Titus Brown" <titus[at]idyll.org>, "N. Tessa Pierce-Ward" <ntpierce[at]ucdavis.edu>
Project-Url: Homepage, https://sourmash.bio/
Project-Url: Documentation, https://sourmash.readthedocs.io
Project-Url: CI, https://github.com/sourmash-bio/sourmash/actions
Project-Url: Source, https://github.com/sourmash-bio/sourmash
Project-Url: Tracker, https://github.com/sourmash-bio/sourmash/issues
License: BSD-3-Clause
Keywords: minhash,bioinformatics
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Console
Classifier: Environment :: MacOS X
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Operating System :: POSIX :: Linux
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Programming Language :: Rust
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.10
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.10
Requires-Dist: screed (<2,>=1.1.3)
Requires-Dist: cffi (>=1.14.0)
Requires-Dist: numpy
Requires-Dist: matplotlib
Requires-Dist: scipy
Requires-Dist: deprecation (>=2.0.6)
Requires-Dist: cachetools (<6,>=4)
Requires-Dist: bitstring (<5,>=3.1.9)
Requires-Dist: pytest (<8.3.0,>=6.2.4); extra == "test"
Requires-Dist: pytest-cov (<6.0,>=4); extra == "test"
Requires-Dist: pytest-xdist (>=3.1); extra == "test"
Requires-Dist: pyyaml (<7,>=6); extra == "test"
Requires-Dist: diff-cover (>=7.3); extra == "test"
Requires-Dist: covdefaults (>=2.2.2); extra == "test"
Requires-Dist: recommonmark; extra == "test"
Requires-Dist: hypothesis; extra == "test"
Requires-Dist: build; extra == "test"
Requires-Dist: jupyter; extra == "demo"
Requires-Dist: jupyter_client; extra == "demo"
Requires-Dist: ipython; extra == "demo"
Requires-Dist: sphinx (<8,>=4.4.0); extra == "doc"
Requires-Dist: myst-parser (==3.0.1); extra == "doc"
Requires-Dist: Jinja2 (==3.1.4); extra == "doc"
Requires-Dist: alabaster; extra == "doc"
Requires-Dist: sphinxcontrib-napoleon; extra == "doc"
Requires-Dist: nbsphinx; extra == "doc"
Requires-Dist: ipython; extra == "doc"
Requires-Dist: docutils (<0.22,>=0.17.1); extra == "doc"
Requires-Dist: ipfshttpclient (>=0.4.13); extra == "storage"
Requires-Dist: redis; extra == "storage"
Requires-Dist: sourmash[demo,doc,storage,test]; extra == "all"
Provides-Extra: test
Provides-Extra: demo
Provides-Extra: doc
Provides-Extra: storage
Provides-Extra: all
Description-Content-Type: text/markdown; charset=UTF-8; variant=GFM
License-File: LICENSE
[Description omitted; length: 6000 characters]

WHEEL

Wheel-Version: 1.0
Generator: maturin (1.4.0)
Root-Is-Purelib: false
Tag: py3-none-win_amd64

RECORD

Path Digest Size
sourmash-4.8.9.dist-info/METADATA sha256=Ov9tNZDX0243XZEoFfTsrTVqPWTAxs1ODb5EqGYwQ2E 9616
sourmash-4.8.9.dist-info/WHEEL sha256=6MoywwTmRr6-H3mIbDc_W2EfllGfs6xh9bsvkmEvE1Y 93
sourmash-4.8.9.dist-info/entry_points.txt sha256=-_qPsYliTzhxqwQrDiL4Mgbru1bZGK6Dmy3CXmjgRx4 50
sourmash-4.8.9.dist-info/license_files/LICENSE sha256=KXCjlzckLj4BDEXuVJgdncRekANzooKPBvQC1cHhxzI 1931
sourmash/cli/.gitignore sha256=YlIJP4EDslv3fjFxv8mVK6nJZEgK6PMm3JxLsS5q6ig 14
sourmash/cli/categorize.py sha256=uCIq_VQEIZF7FiV4pqm9ZmTeJVvdbhi3a3EGpGWhqvA 1223
sourmash/cli/compare.py sha256=Wn4zkqr56JF6Ev1X0S29JA8N6g2OVrICZP-MlFfJ7Hw 4251
sourmash/cli/compute.py sha256=6QGLVVgQYWTgREbyphWBEYvadBptzIyT3odGhbWzI1Y 5030
sourmash/cli/gather.py sha256=ToOVqXvwy70CNCEhGgb6EWc8Sb-Gt9L_iQrS9YluFgc 6785
sourmash/cli/import_csv.py sha256=KCoCtH9KbLJQ0i-3hrhuUuu5tv4DO7Wom5Ztyy7LfxA 689
sourmash/cli/index.py sha256=8kBeQGRsRYKtsW5ftsFxIunb4n08WibiAZ0h35jc9gs 2922
sourmash/cli/info.py sha256=m4HjdDVMAkIbgI-BMI5W3s_my2zCw9VmdsFYwouuGIc 963
sourmash/cli/lca/classify.py sha256=VI96a-xe_6GmzQiEvyui2QGDP0wS8jUbM5BSb5Vc-ds 1464
sourmash/cli/lca/compare_csv.py sha256=a1b30QJQU-niUJ_8ZXQlZJPNuTZTpL11CCjShaQegDs 1483
sourmash/cli/lca/index.py sha256=w9MaTphaWE3ZAYuvr2N3lxviQO6jnC70LWt2iSRXokk 2684
sourmash/cli/lca/rankinfo.py sha256=QQUe2da6oQTLCUEmIACJX7cOYBDnbfxuUzS9JJkOJb4 747
sourmash/cli/lca/summarize.py sha256=YHQaMvAjdUVWtXpcKxfa9pvG8w5X6VK1J0tmZ6AmJvc 1523
sourmash/cli/lca/__init__.py sha256=Kdim7imEGRlgUQMFwpMM1IqxMIngLGHyaZVxFyCXo6c 1225
sourmash/cli/migrate.py sha256=lfmzgHARDkMGuAlPT4sRVF0fhmGNlgzX-vsVS-Ja8Xw 311
sourmash/cli/multigather.py sha256=FleSj8mSK3L7qPLEhMm29EexAF_xloX3a3gPoBEB-GM 3827
sourmash/cli/plot.py sha256=MrqBFcIB7ASZlLoPqQnA2WOe29mxdAttdCq1UpZBoB0 2512
sourmash/cli/prefetch.py sha256=drMGBfyq9_CW8sMFj63iKcFk7S3e5uIgluLNfiUKS00 2602
sourmash/cli/sbt_combine.py sha256=pordSa7JB9_Ok5nCvdhbmh0GjRuvUz6HLGOhCOSfWME 467
sourmash/cli/scripts/__init__.py sha256=Lhlzr0JeF9lHDZatbYQFre-zDoHpnmH_9Bsb_sDBrh0 1760
sourmash/cli/search.py sha256=buX7J9rZLaF70lNDjkmqE0082QvstCKqREkp4N7v7q4 4629
sourmash/cli/sig/cat.py sha256=inFNu9KI-k-_Y_Kim1W6kodJiNaLZMSbAHaxcC2kY_o 1739
sourmash/cli/sig/check.py sha256=TsPbE5yCshKGdcxbTOO7_90DfdeMCMdMQ1kq5gFtddw 3245
sourmash/cli/sig/collect.py sha256=5TmHVXlUy1ns4QIFDrNP1bDh6NQLAIsrYiVlEEvcULo 2661
sourmash/cli/sig/describe.py sha256=15fE9S7vfr76WlAvelalu8X3pczYATNDzioEOMfazn0 1656
sourmash/cli/sig/downsample.py sha256=P1p86F_D0GG2LLxAawrh_Kdbt8ryIG3m1iEq8VhfjkI 2053
sourmash/cli/sig/export.py sha256=uRP2HzwOLG_NnzHEmTYqnwKGlpi1fdbt8MNI8E2FtZo 1066
sourmash/cli/sig/extract.py sha256=bCWreqGpgNjDhMLpeOmxuTshQ2i6Sb387-tLiIlkc8A 2628
sourmash/cli/sig/fileinfo.py sha256=osO31kYs-U6fMs5XKIJdjS8ZdXwpQ8PmSUAZpmkGFeY 1213
sourmash/cli/sig/filter.py sha256=yCvJ16rndTo_UtQY45v-0pjbg3w9y_C-hM00TbMXxvM 1984
sourmash/cli/sig/flatten.py sha256=4RojycSfMVYrhLVMrD9QHxDT8sRIEAMWuf4IAmUWA8M 1749
sourmash/cli/sig/grep.py sha256=H7w2jPJt2NDpOuTrhr-12Scab6Blp12czGxFP0VkI2k 3225
sourmash/cli/sig/inflate.py sha256=50eFvHdLYk4N8-VED4n0IJz48-QGv5lmPhSct0Af5zw 956
sourmash/cli/sig/ingest.py sha256=oT8bljFG7MBuAbST89QG_B0OaCcRNTFnyvIRdVyOYxU 1360
sourmash/cli/sig/intersect.py sha256=ohSRQxLFUdb6LJRCz-xn6YmUJGa0L0Vu4ciOmTCb7rk 1970
sourmash/cli/sig/kmers.py sha256=CGzG7TraIn6r1ElGcPPrtKJ_S3OE0FnJ8Iv2dQ0tKos 3886
sourmash/cli/sig/manifest.py sha256=8ONKi4SzyaAvw7G6W3NMhPIZlcK_2VP4qSZ31ocjP6I 1666
sourmash/cli/sig/merge.py sha256=skyU_zEn4_PynOelgIJVwz6g2lROxcoeZ8uPb4yjgEY 1990
sourmash/cli/sig/overlap.py sha256=2iPszLGdS2NzQIqJ_ErPkzx_XSZq6I-_IiDXNn4mmwE 1471
sourmash/cli/sig/rename.py sha256=mDtaWwI_0qnMcVp0nyfqAQ2TK-_Fd-GgiUxNZhkifVg 1716
sourmash/cli/sig/split.py sha256=f-eRlTrCPy0MHbE-_o43S5QPz1K69Z2GzebYK2qJ1Wk 2456
sourmash/cli/sig/subtract.py sha256=sWRMsGD48plf3eFMRSSUI3B4A2FsqajWuuYtm0qnpSY 1793
sourmash/cli/sig/__init__.py sha256=BOA3bQAYbm9Hngh0jSjyM3uTRBBL1wGkUr33ImWUCU0 1672
sourmash/cli/sketch/dna.py sha256=Wkex3eUkkeqjVYZJvVkrWKOzJ_Zs9Wcih1mbszp8WM0 3322
sourmash/cli/sketch/fromfile.py sha256=2pdTzyqGsro0_RJUhm4Vw_Hm80Kt5gPaGsOR12ML26A 2999
sourmash/cli/sketch/protein.py sha256=MeTMpHNQGpXe1XdJggv3KHShXbqdG_rcA6IafSl_h2s 3500
sourmash/cli/sketch/translate.py sha256=6nd7VywGFj4cH0xAIRMYBFRPVBHi45y8Uub39-f-PmU 3527
sourmash/cli/sketch/__init__.py sha256=Ye2ip2665t3-TyHRcuRofBRt3B3hAinSUFPPgaDQRm0 1291
sourmash/cli/storage/convert.py sha256=qnmSovR2St90VDSkoqAH18ynGzc2LL23UsfYVaSOPx4 415
sourmash/cli/storage/__init__.py sha256=2w2rWJvfBnASzlYTENkAqfoXp4ns2PahTxvcZ-SIgaU 1141
sourmash/cli/tax/annotate.py sha256=AOttZWl0z_d_na6HBwkhLNTwQckTEnm-GOBYTT4CiG4 3146
sourmash/cli/tax/genome.py sha256=HSxfPENJVqhCuGhRds63VdNe8Qn5Y_oMa-hKEGvbBKU 5255
sourmash/cli/tax/grep.py sha256=lRNAXxCHujTkMDL9wh5jYs1-C1WyvxEvXPoAhr4s_iY 2648
sourmash/cli/tax/metagenome.py sha256=tUORxboJ2bQFC3ZbObSYAdPKa8zRE5jCKU3pLocPe0k 4801
sourmash/cli/tax/prepare.py sha256=jxY1oPVF6yzDoHA_5lN880GPMKpWQX_gp6BpJM4enXw 2151
sourmash/cli/tax/summarize.py sha256=571TKCBJSReR2BSLom7HxX4aJsSaz27gHmmi1S7AZog 2228
sourmash/cli/tax/__init__.py sha256=3Rn4t13bKPP_lfEVQbqwGV8MVE3y1q7GuwL23hO7A78 1333
sourmash/cli/utils.py sha256=JVOGg-lG1FiStsulaqRyBymTtnx7OmfDlgPe2iDI7UQ 8725
sourmash/cli/watch.py sha256=NK6onOCFX0yuDi-I57W3cctOsPCZqISYVTVu2hsA87U 1225
sourmash/cli/__init__.py sha256=tH83Is7yqANlnDGs4WXExQ_EQ6K5QdRekVGs7c-TqKM 5808
sourmash/commands.py sha256=BVcM_KTrG-YOcvQPzraER3xQYIuqaGszBDpnLDfiMEo 61071
sourmash/command_compute.py sha256=awqX6WZ8zTdshnGWMjVkuasPzVCskeRPlHluO1VR8Co 18875
sourmash/command_sketch.py sha256=lDoIzl8jBT_ftEIgB7uKhKOcaHdiVONgf_vfOBkjqmM 36606
sourmash/compare.py sha256=BLx_03fpITvPr7TXAD93CxOexRn9xefO85BU6J5l5zY 13780
sourmash/distance_utils.py sha256=No3SXTIJHBeQ9YM8JHffcXMKh8hUVVqdNDgoQ2ok_LY 14292
sourmash/exceptions.py sha256=c32bnq3_iHNYYdqQ_DZEr07B2C7tvdeevHI9m0GuYvY 2057
sourmash/fig.py sha256=5dGGNEENUgwH3sOyd1fiSBU-UNW6_DAocA4ORbPiu6I 2475
sourmash/hll.py sha256=rVXOhvlHKR-DYYy5UM9UhJxGlmTLQbt4TFudEMmhz_I 3869
sourmash/index/revindex.py sha256=ZjlyRDqfPyzRmqxWCulpuZwRgWqXhnDrf7t3e-pEK3o 8379
sourmash/index/sqlite_index.py sha256=VofdSQN1UZr0m8tHwk-FKU93DMW1uIeTTsB0ehjNuf0 41401
sourmash/index/__init__.py sha256=sXgxuCGA14NOJ6vAo2GB29Er8Ryx9f28g13oAFtu_Mo 42843
sourmash/lca/command_classify.py sha256=AW-BbxSL_ss2lrVbqd-MCkvpQ4c2J1WTyOue8LTGqIA 5500
sourmash/lca/command_compare_csv.py sha256=IoOYDjhRDCYmzHcSk4bOvGVTtalvJb7tv_ecKt-zI38 3372
sourmash/lca/command_index.py sha256=M9lb1P7QsZgXMq6kP_unSNPIEFXutMBhaOmEwJ58I14 13718
sourmash/lca/command_rankinfo.py sha256=8wBnzHNq-gnh_Qqq-ccVJCHhomR6JUNIBAK3F-W_4h8 2449
sourmash/lca/command_summarize.py sha256=WNkUSt02EzxmvXx4t4ILRmvKfsGn2oO63zumLWeitWQ 6829
sourmash/lca/lca_db.py sha256=9KFY2r2QM02iH40c3PkiuVDPWsS6TTQCOqlyW2Q-4U8 25091
sourmash/lca/lca_utils.py sha256=0foLQDGUNMiO9NuQJl_xYaXZR9dhuegJlPF9ZALQaCQ 7560
sourmash/lca/__init__.py sha256=c2pFiibZQNIAztJrfCinOBkZISdXB1jjJXoluuSt2-M 440
sourmash/lca/__main__.py sha256=uBCXDEcvM4XNQgwTCpmH23vFaDuf2UVuNrLEQV9SbbY 1095
sourmash/logging.py sha256=sS8CkVKtW6xIASPjRg4R3WzG7MEybwNOTuewfvD-oX4 4072
sourmash/manifest.py sha256=d0-ErzSUdjO5nbc6uXlaFQEt5XPOlxy9aFhmp5f-5hI 11648
sourmash/minhash.py sha256=dGHoA995XroNKb1Zibg1mJh-kG7NLxMhzj2al4RUfDU 41578
sourmash/nodegraph.py sha256=pHoXknL-llmOtoXvmsMyNHjxSREOnxGpTplx2pzQD8E 5623
sourmash/np_utils.py sha256=fWUevQZmIq3nQl2dHVmSefVFQNeFP8O-5VzinVUYZZM 849
sourmash/picklist.py sha256=ZYLBCpqz-8weCu6hf0CabCz8WRZemzZLY6bMSvbD6T4 11218
sourmash/plugins.py sha256=PdCX16QToF5bMt_JXstytYlG55tLD7-HTaORmqsJ-WE 6514
sourmash/save_load.py sha256=fDsUW-MCViOuTa2dTMj7dfgX-khW_r9BZvEhmib_Nu8 16278
sourmash/sbt.py sha256=OoSpDQIy8rMniKQVLdaNIygewJ1qAYCjiYwc4akkv-A 52675
sourmash/sbtmh.py sha256=JeYcOI2M7twLG5seTtKU2UQUA6h6vt-U7XhhU7pl_3s 2258
sourmash/sbt_storage.py sha256=-KzpMs4UwD2-7CyzGBZXgDerGC0g786Q_KJ9HwVVmaU 16328
sourmash/search.py sha256=Y6V8mQ1tSwUl2NgDwg88IEUfWxRNRtPRx75IhzyFluk 35001
sourmash/sig/grep.py sha256=iozYpmvKeHgMdjHRFkAhx2SoGEGuCtmficpxMMEc6dk 4701
sourmash/sig/__init__.py sha256=iWxhLLaKwei7_qXw2N4q9EzTrVoFnHhZFDzZXPXSeeE 83
sourmash/sig/__main__.py sha256=qT3uXQFu9pcEUireqsxU9ltVejKT818KcPZT64FT7J0 54894
sourmash/signature.py sha256=wUflBolE9liDtqL6gHyITnL4fALSqahVu1uJAYCNDL8 15540
sourmash/sketchcomparison.py sha256=oPCgaYiA8-wmiYXumXot8ab3lQvdKpzmux72V51CFTY 9958
sourmash/sourmash_args.py sha256=RqYYYRj_4hL5E6Nx3FU60SA8GUw0rr4GM1_e-FmQK24 27304
sourmash/sqlite_utils.py sha256=5VPR06uluGvtzLewJ_FP815gGk8s2DUM6qkgLWeVwGk 2489
sourmash/tax/tax_utils.py sha256=vaabrXmV7EgVz_N4cwuVozMhIfmdi8w1fG9LGhNY1ko 109238
sourmash/tax/__init__.py sha256=8zoe-LMCDMBGQx7g4SDoHmo7kCkLVRisl0YjBxG8Tds 28
sourmash/tax/__main__.py sha256=DbEiCpG_zb-qm7NjNTv4Ewrc_wSuId_GZYz4Z_K4XUU 24194
sourmash/utils.py sha256=-a4tJB9SUB6ES9k8P9EgMShtnejr2Zh1LZDnmlC4NDQ 2147
sourmash/__init__.py sha256=FWekX8XUuFI2kmlpU117t4s5tcThRg0jeYKKc_Ysafo 4403
sourmash/__main__.py sha256=IGR5LyGM5HBtnPTdhylPYznc-W_cJYRNXNPGA8VV5HU 597
sourmash/_lowlevel/__init__.py sha256=hsVZR7agC05B2LKh1o3-Xj95Uziyiy2NP0_kS0aEM4k 136
sourmash/_lowlevel/ffi.py sha256=Ogscu0dRyBLRGyCkt9Q60LaP0Lq-82ktpltg5OxfW70 17530
sourmash/_lowlevel/native.so sha256=k0-XbaDVTX9CKrPPJmaLTp4SfpTYaf0bcPZ1gJdLdsg 4075520
sourmash-4.8.9.dist-info/RECORD

entry_points.txt

sourmash = sourmash.__main__:main