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ufish

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0.1.1 ufish-0.1.1-py3-none-any.whl

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Project: ufish
Version: 0.1.1
Filename: ufish-0.1.1-py3-none-any.whl
Download: [link]
Size: 644992
MD5: c3467cdd33ab9984800e349a0a597ce1
SHA256: a418812f559f7375297f4da85e05d52461c7c3cf6698e2d115d0bba9dbcd2a82
Uploaded: 2023-09-27 03:37:35 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: ufish
Version: 0.1.1
Summary: Deep learning based spot detection for FISH images.
Author: Weize Xu, Huaiyuan Cai, Qian Zhang
Author-Email: vet.xwz[at]gmail.com
Home-Page: https://github.com/GangCaoLab/U-FISH
License: MIT
Keywords: Spot detection,FISH,Bioimage analysis,Image processing,Deep learning,U-Net
Classifier: Development Status :: 3 - Alpha
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: License :: OSI Approved :: MIT License
Classifier: Intended Audience :: Science/Research
Requires-Python: >=3.9, <4
Requires-Dist: numpy
Requires-Dist: scipy
Requires-Dist: pandas
Requires-Dist: matplotlib
Requires-Dist: torch
Requires-Dist: torchvision
Requires-Dist: scikit-image
Requires-Dist: scikit-learn
Requires-Dist: fire
Requires-Dist: loguru
Requires-Dist: tensorboard
Requires-Dist: imagecodecs
Requires-Dist: onnx
Requires-Dist: onnxruntime
Requires-Dist: zarr
Requires-Dist: ome-zarr
Requires-Dist: pip; extra == "dev"
Requires-Dist: setuptools; extra == "dev"
Requires-Dist: wheel; extra == "dev"
Requires-Dist: twine; extra == "dev"
Requires-Dist: ipdb; extra == "dev"
Requires-Dist: pytest; extra == "dev"
Requires-Dist: pytest-cov; extra == "dev"
Requires-Dist: pytest-asyncio; extra == "dev"
Requires-Dist: flake8; extra == "dev"
Requires-Dist: mypy; extra == "dev"
Requires-Dist: mkdocs; extra == "dev"
Requires-Dist: mkdocs-material; extra == "dev"
Requires-Dist: mkdocstrings[python]; extra == "dev"
Requires-Dist: mkdocs-autorefs; extra == "dev"
Provides-Extra: dev
License-File: LICENSE
[Description omitted; length: 41 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.41.2)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
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ufish/__main__.py sha256=NfiV4bWVNhgFp0XxMIyECFanM37wQoaE1HrgRQ1VCCs 122
ufish/api.py sha256=Nezcny6yTGMwdmB8qZv5dyCAeDq1RCSvMcAiZmGcn1s 29658
ufish/cli.py sha256=gX62yRTaadDu2BtQ2ybo6fKZglE5dkIrWOhWRrJ9GOE 20699
ufish/data.py sha256=qhd2lW_UzjuqktYaDydL2GXQpMgd6UaQS6Suev1sLD4 10665
ufish/model/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
ufish/model/loss.py sha256=J6Oj2Fg1Zt04NneBhdjTpvb0BBvDc4wWfSsAf5cY8RA 1707
ufish/model/train.py sha256=jt4kciKbtnrRyHcu9x8RXvvKk3L01_KA_U7xxgQjZlY 6025
ufish/model/network/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
ufish/model/network/spot_learn.py sha256=yvyqXwqNHuc4bISo812GS7t6oJ_ZKcUuhlmpLYPeRek 1619
ufish/model/network/ufish_net.py sha256=ssxuV1qoa7Iod1KiNwQDtnYR41_fOH9cuAroco_sRcw 6424
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ufish/utils/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
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ufish/utils/ngff.py sha256=Fmv2bspmkXdIG4y6WLnZJnRZf2X6KOKo5ty3ik7EwDA 2795
ufish/utils/plot.py sha256=7LfJapDJT2MsigobeajymPu1s6MNpoL0qqBMNEDUnNs 5286
ufish/utils/spot_calling.py sha256=y7lSWOuxG7ca1nFz2uKC7x7aSzocqQu2p3tCijvvLSI 3970
ufish-0.1.1.dist-info/LICENSE sha256=lucdMgKg-lAp-NwoI2feyBrCrYYRpBP_WettZFHpvCw 1067
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ufish-0.1.1.dist-info/top_level.txt sha256=RQQG-gGMmWK9jzLLP_bjPYAuu5MjbWTKeoSdXblZlo0 6
ufish-0.1.1.dist-info/RECORD — —

top_level.txt

ufish

entry_points.txt

[console_scripts]
ufish = ufish.__main__:main