Wheelodex » Projects » cellarium-ml

cellarium-ml

View on PyPI — Reverse Dependencies (1)

0.0.3 cellarium_ml-0.0.3-py3-none-any.whl

Wheel Details

Project: cellarium-ml
Version: 0.0.3
Filename: cellarium_ml-0.0.3-py3-none-any.whl
Download: [link]
Size: 57270
MD5: e9db6aaaec9c51cd5e8f49da90339a19
SHA256: 058fbbb5a82a0d871431edeb9296d95825b5a4fe62ff57e85d8f49a813533af2
Uploaded: 2023-12-13 16:06:13 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: cellarium-ml
Version: 0.0.3
Summary: Machine learning library for single-cell data analysis
Author-Email: Yerdos Ordabayev <yordabay[at]broadinstitute.org>, Mehrtash Babadi <mehrtash[at]broadinstitute.org>
Project-Url: Homepage, https://cellarium-ai.github.io/cellarium-ml
Project-Url: Source Code, https://github.com/cellarium-ai/cellarium-ml
Project-Url: Bug Tracker, https://github.com/cellarium-ai/cellarium-ml/issues
Project-Url: Discussion Forum, https://github.com/cellarium-ai/cellarium-ml/discussions
License: Copyright (c) 2023, Broad Institute Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.10
Requires-Dist: anndata
Requires-Dist: boltons
Requires-Dist: braceexpand
Requires-Dist: crick (>=0.0.4)
Requires-Dist: google-cloud-storage
Requires-Dist: jsonargparse[signatures]
Requires-Dist: lightning (>=2.0.9)
Requires-Dist: pyro-ppl
Requires-Dist: torch (>=2.0.0)
Requires-Dist: transformers
Requires-Dist: cellarium-ml[docs,lint,mypy,test]; extra == "dev"
Requires-Dist: Pillow; extra == "docs"
Requires-Dist: sphinx; extra == "docs"
Requires-Dist: sphinx-rtd-theme; extra == "docs"
Requires-Dist: sphinx-autodoc-typehints; extra == "docs"
Requires-Dist: sphinx-copybutton; extra == "docs"
Requires-Dist: black[jupyter]; extra == "lint"
Requires-Dist: ruff; extra == "lint"
Requires-Dist: mypy; extra == "mypy"
Requires-Dist: pytest; extra == "test"
Requires-Dist: pytest-xdist; extra == "test"
Requires-Dist: tensorboard; extra == "test"
Provides-Extra: dev
Provides-Extra: docs
Provides-Extra: lint
Provides-Extra: mypy
Provides-Extra: test
Description-Content-Type: text/x-rst
License-File: LICENSE.md
[Description omitted; length: 138 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.42.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
cellarium/ml/__init__.py sha256=h2heoSViVbL-0_JSPA10BGsSafjWvNtpaaxYpMQRNKI 227
cellarium/ml/cli.py sha256=0iQ-l2HgKixcrUFtKadCRd7fpZQOT_yt3eX_5O0JgCU 15398
cellarium/ml/py.typed sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cellarium/ml/callbacks/__init__.py sha256=BHyBJYKVOrg0zIVI_52SvubjdsMvyypP0M8fBukudtw 281
cellarium/ml/callbacks/prediction_writer.py sha256=MwzAXS4ynNAlj_w0jYKKv81uunOgWSTubxjtLkPyjr4 2666
cellarium/ml/callbacks/variance_monitor.py sha256=-tyamjw2-4eU0lw2Wccds5Sd2CKtfX3urRe2mSq5hOY 2830
cellarium/ml/core/__init__.py sha256=GP88sHBYtY0_eulF8w70GRU8fPNkDw29kdfR3A_80TU 274
cellarium/ml/core/datamodule.py sha256=8GZPZAYUfDxXxTTwNPocnAwkHRF2TCC5ur6c5I3JFak 8631
cellarium/ml/core/module.py sha256=9JUx9BqqnCwsJ7JZ99i2LqsGa-SuXjwgx7ZHgBQH29w 10789
cellarium/ml/core/saving.py sha256=7klRxTa8YWqhK_GyGVYVWt_uJHgeyJA5YgSUyc4i1pM 1998
cellarium/ml/data/__init__.py sha256=xQujQ4EIYB3jQEPaIAVH1dv1XvuhJVam6UydVUqTRFI 741
cellarium/ml/data/dadc_dataset.py sha256=CYQrVqloPdZ9dWMp8blSSqtM2ec7HiooJBhoP_xd7z8 12591
cellarium/ml/data/distributed_anndata.py sha256=G8sYk7OqYtYHp3Ok1ot1huSQ7gcgckwfKbD3ODJOqxU 15400
cellarium/ml/data/fileio.py sha256=PCm21Svkn_GfitDc9ioJ04KesV8xiimfJCasTdL7xp0 2407
cellarium/ml/data/schema.py sha256=1nJrY9Freg6geN1sGYjimpbpit9K69qJdKFB9AWvvjU 3970
cellarium/ml/lr_schedulers/__init__.py sha256=BWpLJfA12xaoMUBWsw4isN1VSUXJe22hVUF2VUPSZHs 174
cellarium/ml/lr_schedulers/linear_lr.py sha256=MNvUvlYalDeLpIkgdNy7rc0xXbtFjSBfvOk1P5bBqHg 1480
cellarium/ml/models/__init__.py sha256=Dgkf8jqHYup8j91d9qbo0WBk5Aq19aJKClM9TJGBHKw 1103
cellarium/ml/models/from_cli.py sha256=VPaY00MNzP0_E81w6c0T39gQ9YrTnFhQHX4ngYEHRqI 10649
cellarium/ml/models/gather.py sha256=f2W78JjF-gKbyjNrohLLS1Jm9lMoDJsDHyryR8uiKKw 767
cellarium/ml/models/geneformer.py sha256=-Hnwv4KyFvxgjmzzAhvVFI3Ug5PPTiBtSSKu5pzLjxM 5443
cellarium/ml/models/incremental_pca.py sha256=KuxlraxeWaCYg48_eyW0R3aFqNgl3xLb5vUomLeiLRA 9693
cellarium/ml/models/logistic_regression.py sha256=WBdDMK5RMegWGaRWFOkyPS_NZdsDWNdpv3jn0awY_Gc 4017
cellarium/ml/models/model.py sha256=iMQAFnH-EF3-HshDDj3SXmhTCIZZSxo7bjfOc8QSJig 2788
cellarium/ml/models/onepass_mean_var_std.py sha256=enPfl1SX__0iNcA8WpcYq5Mvl5MV1Ik5Y3KndJMmOHw 2939
cellarium/ml/models/probabilistic_pca.py sha256=C-RKMQ3mckEwgG4k-6OU8WO5hkp767tWgxh9stQMgsI 6761
cellarium/ml/models/tdigest.py sha256=0006wG_SuMm6Un73uZLuS1av45sAjDPXL_jlJgM5mJc 3723
cellarium/ml/preprocessing/__init__.py sha256=rvyn-FZjYTTJkOFEU28C_87DUbkwx1AHQ5mYC3ZmnMQ 220
cellarium/ml/preprocessing/highly_variable_genes.py sha256=DgoEzJ07vO6rSyp3xk88CpaG_vWZVUQedWWnRKm8fzg 5097
cellarium/ml/transforms/__init__.py sha256=iQ0CIPu6VEmz07qV8r7dKGrGuE7LMi4iC8a4OXpXtyE 450
cellarium/ml/transforms/divide_by_scale.py sha256=xsW4_iolROJ2zph6-g_InBwbOnQIiDF4x9Bk4kU-Lyk 1907
cellarium/ml/transforms/filter.py sha256=iNC6H_adcZtEIMf_iynLI-4gIfIbDCVi_Q3iYJ9-1Ok 1944
cellarium/ml/transforms/log1p.py sha256=cB0hpRbnIvs46IcyRoL7bi_XMCvtKsQnbNutYRayqjI 614
cellarium/ml/transforms/normalize_total.py sha256=VqPkczKcgq-zrZGuAcXQrhux2gN5s9vEzW0XIOUbOow 1686
cellarium/ml/transforms/z_score.py sha256=ki2un550sk8KoAlg4tSwZPlJNH_y9B3MjhC-fHTweHs 2094
cellarium/ml/utilities/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cellarium/ml/utilities/data.py sha256=LC6c_4rxnkx8vb70UJPMc0WXZ-pI4bSBB2kYIri5NDY 6235
cellarium/ml/utilities/testing.py sha256=330iPvyNZw7Cjlu-5AClQYCyDczABXKJmxLB013QUeE 2168
cellarium/ml/utilities/types.py sha256=AP2UBUvdizzsb2S8HF78vaK0RHZOvjOtfYP35CKRZw8 186
cellarium_ml-0.0.3.dist-info/LICENSE.md sha256=7F8P8TdpnKRF5Modzzuh6TsMkXG6kZL6oCLKtDrR1u4 1480
cellarium_ml-0.0.3.dist-info/METADATA sha256=tzuAmAuKMY1c0Tc9kP-LWUw0eLdOjc6zh0WfY9Pe2Qc 3651
cellarium_ml-0.0.3.dist-info/WHEEL sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM 92
cellarium_ml-0.0.3.dist-info/entry_points.txt sha256=SOeeHUx1H6QZgv-v4jFUc_iWYf7VAf0M-2KavVABuO8 55
cellarium_ml-0.0.3.dist-info/top_level.txt sha256=ZpIQJ2bqVsleOPhAZMatXuAftUlMeBEoTGsHtgKvnl0 10
cellarium_ml-0.0.3.dist-info/RECORD — —

top_level.txt

cellarium

entry_points.txt

[console_scripts]
cellarium-ml = cellarium.ml.cli:main