Wheelodex » Projects » dreem » dreem-0.1.16-py3-none-any.whl

dreem

View on PyPI — Reverse Dependencies (0)

0.1.16 dreem-0.1.16-py3-none-any.whl

Wheel Details

Project: dreem
Version: 0.1.16
Filename: dreem-0.1.16-py3-none-any.whl
Download: [link]
Size: 1052556
MD5: 832d1b7267da5406f4f166848415abef
SHA256: af1443b2e9b2538d6fd88068857c5158ceb990f873e10fcae26c6822cbc9a167
Uploaded: 2023-07-13 20:31:24 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: dreem
Version: 0.1.16
Summary: DREEM solves RNA structure ensembles using chemical probing data
Author: Silvi Rouskin Lab
Author-Email: silvi[at]hms.harvard.edu
Home-Page: https://github.com/rouskinlab/dreem
Requires-Python: >=3.10
Requires-Dist: alabaster (==0.7.13)
Requires-Dist: appnope (==0.1.3)
Requires-Dist: argcomplete (==2.0.0)
Requires-Dist: arrow (==1.2.3)
Requires-Dist: asttokens (==2.1.0)
Requires-Dist: async-generator (==1.10)
Requires-Dist: attrs (==22.1.0)
Requires-Dist: autoreload (==0.1.2)
Requires-Dist: babel (==2.11.0)
Requires-Dist: backcall (==0.2.0)
Requires-Dist: binaryornot (==0.4.4)
Requires-Dist: bleach (==5.0.1)
Requires-Dist: blockdiag (==3.0.0)
Requires-Dist: build (==0.9.0)
Requires-Dist: chardet (==5.1.0)
Requires-Dist: charset-normalizer (==3.0.1)
Requires-Dist: click (==8.1.3)
Requires-Dist: click-option-group (==0.5.5)
Requires-Dist: colorlog (==6.7.0)
Requires-Dist: commonmark (==0.9.1)
Requires-Dist: contourpy (==1.0.6)
Requires-Dist: cookiecutter (==2.1.1)
Requires-Dist: cssselect2 (==0.7.0)
Requires-Dist: custom-inherit (==2.4.1)
Requires-Dist: cutadapt (>=4.1)
Requires-Dist: cycler (==0.11.0)
Requires-Dist: debugpy (>=1.6.3)
Requires-Dist: decorator (==5.1.1)
Requires-Dist: distlib (==0.3.6)
Requires-Dist: dms-ci (>=0.1.0)
Requires-Dist: dnaio (==0.10.0)
Requires-Dist: docutils (==0.17.1)
Requires-Dist: editorconfig (==0.12.3)
Requires-Dist: entrypoints (==0.4)
Requires-Dist: enum34 (==1.1.10)
Requires-Dist: exceptiongroup (==1.0.4)
Requires-Dist: executing (==1.2.0)
Requires-Dist: fastqsplitter (==1.2.0)
Requires-Dist: filelock (==3.9.0)
Requires-Dist: fonttools (==4.38.0)
Requires-Dist: funcparserlib (==1.0.1)
Requires-Dist: h11 (==0.14.0)
Requires-Dist: idna (==3.4)
Requires-Dist: imagesize (==1.4.1)
Requires-Dist: importlib-metadata (==6.0.0)
Requires-Dist: iniconfig (==1.1.1)
Requires-Dist: jaraco.classes (==3.2.3)
Requires-Dist: jedi (==0.18.2)
Requires-Dist: jinja2 (==3.1.2)
Requires-Dist: jinja2-time (==0.2.0)
Requires-Dist: joblib (==1.2.0)
Requires-Dist: jsbeautifier (==1.14.7)
Requires-Dist: keyring (==23.13.1)
Requires-Dist: kiwisolver (==1.4.4)
Requires-Dist: llvmlite (==0.39.1)
Requires-Dist: lxml (==4.9.1)
Requires-Dist: markupsafe (==2.1.2)
Requires-Dist: matplotlib (==3.6.2)
Requires-Dist: matplotlib-inline (==0.1.6)
Requires-Dist: more-itertools (==9.0.0)
Requires-Dist: nest-asyncio (==1.5.6)
Requires-Dist: nox (==2022.11.21)
Requires-Dist: numba (==0.56.4)
Requires-Dist: numpy (==1.23.4)
Requires-Dist: outcome (==1.2.0)
Requires-Dist: packaging (==21.3)
Requires-Dist: pandas (==1.5.2)
Requires-Dist: parso (==0.8.3)
Requires-Dist: pep517 (==0.13.0)
Requires-Dist: pexpect (==4.8.0)
Requires-Dist: pickleshare (==0.7.5)
Requires-Dist: pillow (==9.3.0)
Requires-Dist: pip-tools (==6.10.0)
Requires-Dist: pkginfo (==1.9.6)
Requires-Dist: platformdirs (==2.5.4)
Requires-Dist: plotly (==5.11.0)
Requires-Dist: pluggy (==1.0.0)
Requires-Dist: prompt-toolkit (==3.0.33)
Requires-Dist: psutil (==5.9.4)
Requires-Dist: ptyprocess (==0.7.0)
Requires-Dist: pure-eval (==0.2.2)
Requires-Dist: py4j (==0.10.9.5)
Requires-Dist: pyaml (==21.10.1)
Requires-Dist: pyarrow (==10.0.1)
Requires-Dist: pydantic (==1.10.4)
Requires-Dist: pygments (==2.13.0)
Requires-Dist: pyparsing (==3.0.9)
Requires-Dist: pysocks (==1.7.1)
Requires-Dist: pyspark (==3.3.1)
Requires-Dist: pytest (==7.2.0)
Requires-Dist: python-dateutil (==2.8.2)
Requires-Dist: python-slugify (==8.0.1)
Requires-Dist: pytz (==2022.6)
Requires-Dist: pyyaml (==6.0)
Requires-Dist: pyzmq (==24.0.1)
Requires-Dist: readme-renderer (==37.3)
Requires-Dist: recommonmark (==0.7.1)
Requires-Dist: reportlab (==3.6.12)
Requires-Dist: requests (==2.28.2)
Requires-Dist: requests-toolbelt (==0.10.1)
Requires-Dist: rfc3986 (==2.0.0)
Requires-Dist: rich (==13.0.1)
Requires-Dist: scikit-learn (==1.1.3)
Requires-Dist: scipy (==1.9.3)
Requires-Dist: seaborn (==0.12.1)
Requires-Dist: selenium (==4.7.2)
Requires-Dist: six (==1.16.0)
Requires-Dist: sniffio (==1.3.0)
Requires-Dist: snowballstemmer (==2.2.0)
Requires-Dist: sortedcontainers (==2.4.0)
Requires-Dist: sphinx (==4.5.0)
Requires-Dist: sphinx-panels (==0.6.0)
Requires-Dist: sphinx-rtd-theme (==1.1.1)
Requires-Dist: sphinxcontrib-blockdiag (==3.0.0)
Requires-Dist: sphinxcontrib-devhelp (==1.0.2)
Requires-Dist: sphinxcontrib-htmlhelp (==2.0.1)
Requires-Dist: sphinxcontrib-jsmath (==1.0.1)
Requires-Dist: sphinxcontrib-qthelp (==1.0.3)
Requires-Dist: sphinxcontrib-serializinghtml (==1.1.5)
Requires-Dist: sphinx-click (==4.4.0)
Requires-Dist: stack-data (==0.6.1)
Requires-Dist: svglib (==1.4.1)
Requires-Dist: tenacity (==8.1.0)
Requires-Dist: text-unidecode (==1.3)
Requires-Dist: threadpoolctl (==3.1.0)
Requires-Dist: tinycss2 (==1.2.1)
Requires-Dist: tomli (==2.0.1)
Requires-Dist: tornado (==6.2)
Requires-Dist: tqdm (==4.64.1)
Requires-Dist: traitlets (>=5.1)
Requires-Dist: trio (==0.22.0)
Requires-Dist: trio-websocket (==0.9.2)
Requires-Dist: typing-extensions (==4.5.0)
Requires-Dist: urllib3 (==1.26.13)
Requires-Dist: virtualenv (==20.20.0)
Requires-Dist: watchdog (==2.2.0)
Requires-Dist: wcwidth (==0.2.5)
Requires-Dist: webcolors (==1.12)
Requires-Dist: webencodings (==0.5.1)
Requires-Dist: wsproto (==1.2.0)
Requires-Dist: xopen (==1.7.0)
Requires-Dist: zipp (==3.11.0)
License-File: LICENSE
[Description omitted; length: 915 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.40.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
dreem/__init__.py sha256=sqXpc6BH89P6LjiuExxM04xjBk6h5AvbC76lKRaJf1k 177
dreem/env.yml sha256=LDoBjR-JmOuu7SR_63XgGLy9tXS-4NftbDnyqtMLqrI 766
dreem/main.py sha256=PN-if7VGPbYxKy_iQZElqTlnYjOWCG4upg5vB3Fe5HA 10067
dreem/requirements.txt sha256=3-r5XNtvLEthdtB2PII0i8zMpqODGucHK1_EN7CqWKY 2501
dreem/aggregate/__init__.py sha256=anR2i0qHNNCiX6D4bIB_EgSNH3iFfTA2t7f7OCiDQ9Y 35
dreem/aggregate/library.py sha256=Jzk5AOQQsBRAIfpmoWOxt3U2n3SDS60MTyR4y5N3BnA 2651
dreem/aggregate/library_samples.py sha256=3ueu5SLABLJ0rEKBJc157YvgqESJXQYU5rKsDR00lbM 1976
dreem/aggregate/main.py sha256=4rnTfL3JWXAVkERarMUbEsk3ZQnO6s71wt3CJFCb4Lk 6714
dreem/aggregate/mutation_count.py sha256=CtFaOyG83nulpTBO0xYoWnVkUjACXU2QRfq0dh18L1g 3388
dreem/align/__init__.py sha256=gTr4Mq6iumtyDFdEtfad61iRTX-olPavAYxNN2yN1_I 35
dreem/align/fq2bam.py sha256=w_wB9QSARlTOl1n5PgRLY_pCet6p3yuaUhaKKuPLJDs 21882
dreem/align/fqs.py sha256=M7bm68-eRNm8eE9ptN3NCXZRPB6ABG2HRtDaW41nxrg 25001
dreem/align/main.py sha256=6hP6CcMdfHNoZf535W8-7qHKFFi-pAyxMVUggfnl5Fo 7100
dreem/align/xams.py sha256=dH1yz4UbEtqRHygCM3Edzj9A7rqSJzQ58ChJolBBU0I 9982
dreem/cluster/EMclustering.py sha256=bb3FHu-KLhYkAze6CqJUnhSEc2pM1sOwnGVGOTNHqrI 13117
dreem/cluster/__init__.py sha256=I3Zg9r9ZD35Vxk9C9KN_4wJjzNwgoCUQ8uKuq0slQKk 35
dreem/cluster/bitvector.py sha256=0VSnzkYGmQP5QReKblmlfcpUgK9pxhn6h1xPktAzb1E 8800
dreem/cluster/clusteringAnalysis.py sha256=0X0jSr2atC24eqdGPc9S37oqm72gv6edquYyrmFkw0I 6503
dreem/cluster/main.py sha256=46BzEHS8fxRg9H6lFxWKN-ZZFu7aQ-Wzun4kgXbc2KE 3628
dreem/demultiplex/__init__.py sha256=gTr4Mq6iumtyDFdEtfad61iRTX-olPavAYxNN2yN1_I 35
dreem/demultiplex/demultiplex.py sha256=dfJGJKesOK5sKduz3LnXxzE7fvXgjkFHa0Z46dJrP7M 39590
dreem/demultiplex/main.py sha256=ezMc2dAShb66zcaafjLBH5cgA231fUeIHaz7lVM0vNw 1819
dreem/demultiplex/slurm_dispatch.py sha256=IvknqfY82WabKOYAXtmxr0A0igsg99Pmkpxx2fGo7F8 5514
dreem/draw/__init__.py sha256=97lX_Kgt4MAlkcALg0jghr03dgbAExlyUsoV-YQQAm0 315
dreem/draw/load_dataset.py sha256=Vz-ROc9jXT1QUxAKi9PAnLmXrlE9dhio8bQJOSovhFg 225
dreem/draw/main.py sha256=YG-SvWGMWVDp3gr7Cl6vAWafxtwacJGfd96wO5HVNo8 5995
dreem/draw/manipulator.py sha256=mqix3BviX5a7VOVH0NYN2V9LaK94BhlbDXpqaZBAcL4 6694
dreem/draw/plotter.py sha256=_jJOEK4aO76Fr8kiYkUcXyxiaavN1TsBvIfU5a25CQE 22402
dreem/draw/study.py sha256=GIpesXnpNekjk7Hkr-udxBaKksz942ZnLSpcC08_lXI 18178
dreem/draw/util.py sha256=pGjuzWCsLx0rGB1xoVBx4lND3elPEDO1AuB9fbSYFQ0 11285
dreem/draw/resources/my_dataset.feather sha256=5GUP-_-ELj8rt-WjvzhfJI5do4wNOOqLfcY9lfgVqic 1615050
dreem/resources/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
dreem/resources/get_attributes.py sha256=E-d6SJGV2BT8ZupYwTQCOgsnTsCu3KwutDXqgTJ_pQo 475
dreem/util/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
dreem/util/artxt.py sha256=N7jzA4uwss7FOf891FpXNj50QTfjLMCEaMF1ycaNkVk 163
dreem/util/cli.py sha256=NlxTSEEnUCcOJ5i4nrwAUfFTEOg5Ys0e6fSuB5nsWcY 25083
dreem/util/dependencies.py sha256=tiV8lAFmRNhTHbw6-x8s-ldBJDSqM2S1fhaW1EV4bcU 7279
dreem/util/dms.py sha256=vE4bYDi7edZ_9u83hoNcARnugDJY1NDE8RRmlgovXVs 4365
dreem/util/docdef.py sha256=Nw6-nkCzdM3IHewwIKnFO_hHmS5bkbSwBJ14yCRJlPY 6867
dreem/util/docstring.py sha256=y_SxbvI6dLfkrnl3U8tAKF2QvwnZ5VLbQM-s80nANpQ 2264
dreem/util/dump.py sha256=TflfJQcsdxF1cgzkXuAMqdeDMRpzq-YbnsuErqi0imE 1911
dreem/util/files_sanity.py sha256=2Upgn9l9i5Eyb4-jhUDLd7GDxAaDsG6DkxffyHkS0hg 13411
dreem/util/logs.py sha256=5BVC1fnTTcK8LnIR1d5f3XLjXwaLr7jPaTKKpD8Um8o 3682
dreem/util/parallel.py sha256=nyLNIkZLlEz0z5GrLN1mwc769zYjJFp5ONqlar-0S7M 5530
dreem/util/path.py sha256=I78iQVFQGkm96IuLgKdHVRbgObGNys6exMDr78J3-K8 58372
dreem/util/rnastructure.py sha256=dZjmzczJdqFMKko2dEaP4NhNaGxHNQP877o9o-rzZJE 7376
dreem/util/seq.py sha256=w3aQw6wxkldU5hYe98VK-ZAitAC_8djMZNsY7BaeZqA 8030
dreem/util/shell.py sha256=vmLvx2kwSk3jmWc8he0vayuY-674mFMT0HCYAd3hGVg 859
dreem/util/util.py sha256=wnWwabF00ZMKaCWMZsGy7Z81tlvsqjrpbI5tguMkoFQ 6024
dreem/vector/__init__.py sha256=gTr4Mq6iumtyDFdEtfad61iRTX-olPavAYxNN2yN1_I 35
dreem/vector/main.py sha256=igZ-ZC9aU_G4dZnJIhaDKDsjeimYS8ixb0QQQmlXEbI 6621
dreem/vector/profile.py sha256=5tpO9j5jTAuuhfjTssFq8OZwxdZSE91exOMDBOGiYgM 71580
dreem/vector/samread.py sha256=F7GWXryT0eaRKjNJFHAB-PfkMvxkz-sNva81KHViofM 15683
dreem/vector/vector.py sha256=WTBXIBIBwNqBOSThJrxcZEEC3pOj1ahVDLFeTxtPVbI 38492
dreem-0.1.16.dist-info/LICENSE sha256=iHHpJ_zrRhviR7661K9cj49M7iKEzyrJvB-fL33xX8U 1227
dreem-0.1.16.dist-info/METADATA sha256=YHccL42zU8djnLPN1whnWUdGOqgijYD_AnLMULpUypI 6253
dreem-0.1.16.dist-info/WHEEL sha256=pkctZYzUS4AYVn6dJ-7367OJZivF2e8RA9b_ZBjif18 92
dreem-0.1.16.dist-info/entry_points.txt sha256=JdVKK0mcUxVg4lHhJJcgrjdQPdpS1ybLiB5u7okRhdw 43
dreem-0.1.16.dist-info/top_level.txt sha256=YMbvuA0Znnj-ga-JLptVQNvO_tbEEF1AgHMExEoGWVA 6
dreem-0.1.16.dist-info/RECORD — —

top_level.txt

dreem

entry_points.txt

[console_scripts]
dreem = dreem.main:cli